data_6EXS # _model_server_result.job_id '_Bj1vyO4nML1VYu2jzAmVw' _model_server_result.datetime_utc '2024-12-24 00:15:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6exs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":514}' # _entry.id 6EXS # _exptl.entry_id 6EXS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.395 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[[(2~{R})-2-azanyl-3-[(3~{S})-3-methyl-1-oxidanyl-hexan-3-yl]sulfanyl-propanoyl]amino]ethanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.75 _cell.angle_gamma 90 _cell.entry_id 6EXS _cell.length_a 60.04 _cell.length_b 55.576 _cell.length_c 100.866 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EXS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H24 N2 O4 S' _chem_comp.formula_weight 292.395 _chem_comp.id C3H _chem_comp.mon_nstd_flag . _chem_comp.name '2-[[(2~{R})-2-azanyl-3-[(3~{S})-3-methyl-1-oxidanyl-hexan-3-yl]sulfanyl-propanoyl]amino]ethanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C9 C3H doub 70 n n S C7 C3H sing 71 n n S C3 C3H sing 72 n n O2 C11 C3H doub 73 n n C7 C8 C3H sing 74 n n C9 N1 C3H sing 75 n n C9 C8 C3H sing 76 n n C11 O3 C3H sing 77 n n C11 C10 C3H sing 78 n n C2 C3 C3H sing 79 n n C2 C1 C3H sing 80 n n C C1 C3H sing 81 n n N1 C10 C3H sing 82 n n C3 C4 C3H sing 83 n n C3 C5 C3H sing 84 n n C8 N C3H sing 85 n n C5 C6 C3H sing 86 n n C6 O C3H sing 87 n n O3 H1 C3H sing 88 n n C10 H2 C3H sing 89 n n C10 H3 C3H sing 90 n n N1 H4 C3H sing 91 n n C8 H5 C3H sing 92 n n N H6 C3H sing 93 n n N H7 C3H sing 94 n n C7 H9 C3H sing 95 n n C7 H10 C3H sing 96 n n C4 H11 C3H sing 97 n n C4 H12 C3H sing 98 n n C4 H13 C3H sing 99 n n C5 H14 C3H sing 100 n n C5 H15 C3H sing 101 n n C6 H16 C3H sing 102 n n C6 H17 C3H sing 103 n n O H18 C3H sing 104 n n C2 H19 C3H sing 105 n n C2 H20 C3H sing 106 n n C1 H21 C3H sing 107 n n C1 H22 C3H sing 108 n n C H23 C3H sing 109 n n C H24 C3H sing 110 n n C H25 C3H sing 111 n n # _atom_sites.entry_id 6EXS _atom_sites.fract_transf_matrix[1][1] 0.016656 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004385 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017993 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010252 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLC A 1 501 1 OLC OLC . C 2 OLC A 1 502 2 OLC OLC . D 2 OLC A 1 503 3 OLC OLC . E 2 OLC A 1 504 5 OLC OLC . F 2 OLC A 1 505 6 OLC OLC . G 2 OLC A 1 506 7 OLC OLC . H 2 OLC A 1 507 8 OLC OLC . I 2 OLC A 1 508 9 OLC OLC . J 2 OLC A 1 509 10 OLC OLC . K 2 OLC A 1 510 11 OLC OLC . L 2 OLC A 1 511 12 OLC OLC . M 2 OLC A 1 512 13 OLC OLC . N 2 OLC A 1 513 14 OLC OLC . O 3 C3H A 1 514 1 C3H C3H . P 4 HOH A 1 601 129 HOH HOH . P 4 HOH A 2 602 107 HOH HOH . P 4 HOH A 3 603 18 HOH HOH . P 4 HOH A 4 604 6 HOH HOH . P 4 HOH A 5 605 100 HOH HOH . P 4 HOH A 6 606 99 HOH HOH . P 4 HOH A 7 607 39 HOH HOH . P 4 HOH A 8 608 3 HOH HOH . P 4 HOH A 9 609 120 HOH HOH . P 4 HOH A 10 610 106 HOH HOH . P 4 HOH A 11 611 119 HOH HOH . P 4 HOH A 12 612 115 HOH HOH . P 4 HOH A 13 613 105 HOH HOH . P 4 HOH A 14 614 50 HOH HOH . P 4 HOH A 15 615 128 HOH HOH . P 4 HOH A 16 616 103 HOH HOH . P 4 HOH A 17 617 32 HOH HOH . P 4 HOH A 18 618 2 HOH HOH . P 4 HOH A 19 619 10 HOH HOH . P 4 HOH A 20 620 97 HOH HOH . P 4 HOH A 21 621 72 HOH HOH . P 4 HOH A 22 622 16 HOH HOH . P 4 HOH A 23 623 1 HOH HOH . P 4 HOH A 24 624 94 HOH HOH . P 4 HOH A 25 625 95 HOH HOH . P 4 HOH A 26 626 9 HOH HOH . P 4 HOH A 27 627 12 HOH HOH . P 4 HOH A 28 628 45 HOH HOH . P 4 HOH A 29 629 33 HOH HOH . P 4 HOH A 30 630 52 HOH HOH . P 4 HOH A 31 631 13 HOH HOH . P 4 HOH A 32 632 34 HOH HOH . P 4 HOH A 33 633 108 HOH HOH . P 4 HOH A 34 634 71 HOH HOH . P 4 HOH A 35 635 122 HOH HOH . P 4 HOH A 36 636 130 HOH HOH . P 4 HOH A 37 637 15 HOH HOH . P 4 HOH A 38 638 125 HOH HOH . P 4 HOH A 39 639 5 HOH HOH . P 4 HOH A 40 640 7 HOH HOH . P 4 HOH A 41 641 42 HOH HOH . P 4 HOH A 42 642 78 HOH HOH . P 4 HOH A 43 643 17 HOH HOH . P 4 HOH A 44 644 98 HOH HOH . P 4 HOH A 45 645 35 HOH HOH . P 4 HOH A 46 646 114 HOH HOH . P 4 HOH A 47 647 127 HOH HOH . P 4 HOH A 48 648 79 HOH HOH . P 4 HOH A 49 649 109 HOH HOH . P 4 HOH A 50 650 123 HOH HOH . P 4 HOH A 51 651 92 HOH HOH . P 4 HOH A 52 652 27 HOH HOH . P 4 HOH A 53 653 102 HOH HOH . P 4 HOH A 54 654 118 HOH HOH . P 4 HOH A 55 655 124 HOH HOH . P 4 HOH A 56 656 101 HOH HOH . P 4 HOH A 57 657 58 HOH HOH . P 4 HOH A 58 658 44 HOH HOH . P 4 HOH A 59 659 14 HOH HOH . P 4 HOH A 60 660 116 HOH HOH . P 4 HOH A 61 661 74 HOH HOH . P 4 HOH A 62 662 36 HOH HOH . P 4 HOH A 63 663 46 HOH HOH . P 4 HOH A 64 664 126 HOH HOH . P 4 HOH A 65 665 112 HOH HOH . P 4 HOH A 66 666 111 HOH HOH . P 4 HOH A 67 667 89 HOH HOH . P 4 HOH A 68 668 121 HOH HOH . P 4 HOH A 69 669 54 HOH HOH . P 4 HOH A 70 670 48 HOH HOH . P 4 HOH A 71 671 47 HOH HOH . P 4 HOH A 72 672 55 HOH HOH . P 4 HOH A 73 673 113 HOH HOH . P 4 HOH A 74 674 23 HOH HOH . P 4 HOH A 75 675 117 HOH HOH . P 4 HOH A 76 676 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 C3H . . . O 3 18.2 2.22 32.326 0.75 69.54 ? O2 C3H 514 A 1 HETATM 2 C C11 C3H . . . O 3 17.989 3.005 33.18 0.75 68.31 ? C11 C3H 514 A 1 HETATM 3 O O3 C3H . . . O 3 16.945 3.757 33.215 0.75 68.52 ? O3 C3H 514 A 1 HETATM 4 C C10 C3H . . . O 3 18.915 3.302 34.323 0.75 66.9 ? C10 C3H 514 A 1 HETATM 5 N N1 C3H . . . O 3 20.304 3.073 34.006 0.75 65.3 ? N1 C3H 514 A 1 HETATM 6 C C9 C3H . . . O 3 21.045 4.004 33.429 0.75 65.79 ? C9 C3H 514 A 1 HETATM 7 O O1 C3H . . . O 3 20.692 4.616 32.432 0.75 68.68 ? O1 C3H 514 A 1 HETATM 8 C C8 C3H . . . O 3 22.368 4.334 34.038 0.75 63.57 ? C8 C3H 514 A 1 HETATM 9 N N C3H . . . O 3 22.747 3.274 34.962 0.75 63.93 ? N C3H 514 A 1 HETATM 10 C C7 C3H . . . O 3 23.452 4.437 32.964 0.75 63.34 ? C7 C3H 514 A 1 HETATM 11 S S C3H . . . O 3 23.965 6.098 32.45 0.75 63.64 ? S C3H 514 A 1 HETATM 12 C C3 C3H . . . O 3 24.84 7.004 33.835 0.75 55.14 ? C3 C3H 514 A 1 HETATM 13 C C4 C3H . . . O 3 26.131 6.264 34.072 0.75 52.12 ? C4 C3H 514 A 1 HETATM 14 C C5 C3H . . . O 3 23.875 7.057 35.027 0.75 51.07 ? C5 C3H 514 A 1 HETATM 15 C C6 C3H . . . O 3 24.429 7.552 36.344 0.75 46.34 ? C6 C3H 514 A 1 HETATM 16 O O C3H . . . O 3 24.364 6.586 37.341 0.75 41.31 ? O C3H 514 A 1 HETATM 17 C C2 C3H . . . O 3 25.147 8.445 33.436 0.75 54.02 ? C2 C3H 514 A 1 HETATM 18 C C1 C3H . . . O 3 24.473 9.515 34.278 0.75 51.79 ? C1 C3H 514 A 1 HETATM 19 C C C3H . . . O 3 24.848 10.897 33.817 0.75 50.23 ? C C3H 514 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 44 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 1234 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 19 #