data_6EXY # _model_server_result.job_id Y0AEM7e4-sMhmyyGleoR7Q _model_server_result.datetime_utc '2024-11-21 23:32:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6exy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6EXY # loop_ _exptl.entry_id _exptl.method 6EXY 'X-RAY DIFFRACTION' 6EXY 'NEUTRON DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EXY _cell.length_a 37.314 _cell.length_b 58.352 _cell.length_c 63.867 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EXY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6EXY _atom_sites.fract_transf_matrix[1][1] 0.0268 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017137 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015658 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 301 GOL GOL . C 3 HOH A 1 401 401 HOH HOH . C 3 HOH A 2 402 404 HOH HOH . C 3 HOH A 3 403 405 HOH HOH . C 3 HOH A 4 404 403 HOH HOH . C 3 HOH A 5 405 407 HOH HOH . C 3 HOH A 6 406 409 HOH HOH . C 3 HOH A 7 407 406 HOH HOH . C 3 HOH A 8 408 408 HOH HOH . C 3 HOH A 9 409 402 HOH HOH . C 3 HOH A 10 410 411 HOH HOH . C 3 HOH A 11 411 424 HOH HOH . C 3 HOH A 12 412 410 HOH HOH . C 3 HOH A 13 413 415 HOH HOH . C 3 HOH A 14 414 414 HOH HOH . C 3 HOH A 15 415 418 HOH HOH . C 3 HOH A 16 416 416 HOH HOH . C 3 HOH A 17 417 419 HOH HOH . C 3 HOH A 18 418 425 HOH HOH . C 3 HOH A 19 419 426 HOH HOH . C 3 HOH A 20 420 422 HOH HOH . C 3 HOH A 21 421 439 HOH HOH . C 3 HOH A 22 422 433 HOH HOH . C 3 HOH A 23 423 412 HOH HOH . C 3 HOH A 24 424 432 HOH HOH . C 3 HOH A 25 425 423 HOH HOH . C 3 HOH A 26 426 429 HOH HOH . C 3 HOH A 27 427 417 HOH HOH . C 3 HOH A 28 428 413 HOH HOH . C 3 HOH A 29 429 427 HOH HOH . C 3 HOH A 30 430 431 HOH HOH . C 3 HOH A 31 431 420 HOH HOH . C 3 HOH A 32 432 438 HOH HOH . C 3 HOH A 33 433 435 HOH HOH . C 3 HOH A 34 434 437 HOH HOH . C 3 HOH A 35 435 501 HOH HOH . C 3 HOH A 36 436 428 HOH HOH . C 3 HOH A 37 437 440 HOH HOH . C 3 HOH A 38 438 447 HOH HOH . C 3 HOH A 39 439 430 HOH HOH . C 3 HOH A 40 440 421 HOH HOH . C 3 HOH A 41 441 441 HOH HOH . C 3 HOH A 42 442 442 HOH HOH . C 3 HOH A 43 443 443 HOH HOH . C 3 HOH A 44 444 436 HOH HOH . C 3 HOH A 45 445 449 HOH HOH . C 3 HOH A 46 446 451 HOH HOH . C 3 HOH A 47 447 445 HOH HOH . C 3 HOH A 48 448 448 HOH HOH . C 3 HOH A 49 449 444 HOH HOH . C 3 HOH A 50 450 457 HOH HOH . C 3 HOH A 51 451 454 HOH HOH . C 3 HOH A 52 452 446 HOH HOH . C 3 HOH A 53 453 474 HOH HOH . C 3 HOH A 54 454 452 HOH HOH . C 3 HOH A 55 455 453 HOH HOH . C 3 HOH A 56 456 434 HOH HOH . C 3 HOH A 57 457 458 HOH HOH . C 3 HOH A 58 458 450 HOH HOH . C 3 HOH A 59 459 455 HOH HOH . C 3 HOH A 60 460 456 HOH HOH . C 3 HOH A 61 461 459 HOH HOH . C 3 HOH A 62 462 465 HOH HOH . C 3 HOH A 63 463 468 HOH HOH . C 3 HOH A 64 464 466 HOH HOH . C 3 HOH A 65 465 464 HOH HOH . C 3 HOH A 66 466 461 HOH HOH . C 3 HOH A 67 467 462 HOH HOH . C 3 HOH A 68 468 467 HOH HOH . C 3 HOH A 69 469 473 HOH HOH . C 3 HOH A 70 470 471 HOH HOH . C 3 HOH A 71 471 463 HOH HOH . C 3 HOH A 72 472 470 HOH HOH . C 3 HOH A 73 473 500 HOH HOH . C 3 HOH A 74 474 469 HOH HOH . C 3 HOH A 75 475 472 HOH HOH . C 3 HOH A 76 476 475 HOH HOH . C 3 HOH A 77 477 477 HOH HOH . C 3 HOH A 78 478 479 HOH HOH . C 3 HOH A 79 479 478 HOH HOH . C 3 HOH A 80 480 480 HOH HOH . C 3 HOH A 81 481 460 HOH HOH . C 3 HOH A 82 482 481 HOH HOH . C 3 HOH A 83 483 482 HOH HOH . C 3 HOH A 84 484 484 HOH HOH . C 3 HOH A 85 485 483 HOH HOH . C 3 HOH A 86 486 476 HOH HOH . C 3 HOH A 87 487 485 HOH HOH . C 3 HOH A 88 488 486 HOH HOH . C 3 HOH A 89 489 488 HOH HOH . C 3 HOH A 90 490 489 HOH HOH . C 3 HOH A 91 491 487 HOH HOH . C 3 HOH A 92 492 492 HOH HOH . C 3 HOH A 93 493 490 HOH HOH . C 3 HOH A 94 494 491 HOH HOH . C 3 HOH A 95 495 494 HOH HOH . C 3 HOH A 96 496 493 HOH HOH . C 3 HOH A 97 497 495 HOH HOH . C 3 HOH A 98 498 496 HOH HOH . C 3 HOH A 99 499 497 HOH HOH . C 3 HOH A 100 500 498 HOH HOH . C 3 HOH A 101 501 499 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 18.434 -6.79 -0.553 1 16.61 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . B 2 18.145 -7.128 0.777 1 15.07 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . B 2 19.955 -6.618 -0.694 1 16.6 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . B 2 20.594 -7.796 -0.315 1 17.47 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . B 2 20.395 -5.431 0.166 1 16.63 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . B 2 21.784 -5.254 -0.015 1 17 ? O3 GOL 301 A 1 HETATM 7 D D11 GOL . . . B 2 18.104 -7.598 -1.276 1 17.08 ? D11 GOL 301 A 1 HETATM 8 D D12 GOL . . . B 2 17.906 -5.861 -0.874 1 17 ? D12 GOL 301 A 1 HETATM 9 D DO1 GOL . . . B 2 17.482 -6.574 1.06 1 14.61 ? DO1 GOL 301 A 1 HETATM 10 D D2 GOL . . . B 2 20.219 -6.455 -1.737 1 17.78 ? D2 GOL 301 A 1 HETATM 11 D DO2 GOL . . . B 2 21.421 -7.859 -0.775 1 18.73 ? DO2 GOL 301 A 1 HETATM 12 D D31 GOL . . . B 2 20.086 -5.628 1.195 1 16.97 ? D31 GOL 301 A 1 HETATM 13 D D32 GOL . . . B 2 19.833 -4.512 -0.152 1 17.55 ? D32 GOL 301 A 1 HETATM 14 D DO3 GOL . . . B 2 22.22 -5.896 0.528 1 16.81 ? DO3 GOL 301 A 1 # _model_server_stats.io_time_ms 93 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #