data_6EYA # _model_server_result.job_id BpJipSH6CjR7iAiJaAvMCA _model_server_result.datetime_utc '2024-11-23 16:44:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eya # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6EYA # _exptl.entry_id 6EYA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 415.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-(1,3-benzodioxol-5-yl)-~{N}-methyl-3-[(3-methylphenyl)methyl]-6-oxidanyl-1~{H}-indazole-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EYA _cell.length_a 66.989 _cell.length_b 90.769 _cell.length_c 99.494 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EYA _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H21 N3 O4' _chem_comp.formula_weight 415.441 _chem_comp.id C4K _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-(1,3-benzodioxol-5-yl)-~{N}-methyl-3-[(3-methylphenyl)methyl]-6-oxidanyl-1~{H}-indazole-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 N25 C4K sing 70 n n O7 C6 C4K doub 71 n n N25 C6 C4K sing 72 n n N25 C23 C4K sing 73 n n C6 C1 C4K sing 74 n n C16 C18 C4K doub 75 n y C16 C17 C4K sing 76 n y C18 C15 C4K sing 77 n y C22 C23 C4K doub 78 n y C22 C21 C4K sing 79 n y C23 C24 C4K sing 80 n y C1 C4 C4K doub 81 n y C1 C2 C4K sing 82 n y C20 C17 C4K sing 83 n n O5 C2 C4K sing 84 n n C17 C19 C4K doub 85 n y C21 C27 C4K doub 86 n y C15 C14 C4K doub 87 n y C4 C8 C4K sing 88 n y C2 C3 C4K doub 89 n y C24 C28 C4K doub 90 n y C19 C14 C4K sing 91 n y C14 C13 C4K sing 92 n n C27 C28 C4K sing 93 n y C27 O31 C4K sing 94 n n C28 O29 C4K sing 95 n n C8 C9 C4K doub 96 n y C8 C12 C4K sing 97 n y C3 C9 C4K sing 98 n y O31 C30 C4K sing 99 n n C9 N10 C4K sing 100 n y C13 C12 C4K sing 101 n n C12 N11 C4K doub 102 n y O29 C30 C4K sing 103 n n N10 N11 C4K sing 104 n y C3 H1 C4K sing 105 n n O5 H2 C4K sing 106 n n C13 H3 C4K sing 107 n n C13 H4 C4K sing 108 n n C15 H5 C4K sing 109 n n C16 H6 C4K sing 110 n n C19 H7 C4K sing 111 n n C20 H8 C4K sing 112 n n C20 H9 C4K sing 113 n n C20 H10 C4K sing 114 n n C21 H11 C4K sing 115 n n C22 H12 C4K sing 116 n n C24 H13 C4K sing 117 n n C30 H14 C4K sing 118 n n C30 H15 C4K sing 119 n n C4 H16 C4K sing 120 n n N10 H17 C4K sing 121 n n C18 H18 C4K sing 122 n n C26 H19 C4K sing 123 n n C26 H20 C4K sing 124 n n C26 H21 C4K sing 125 n n # _atom_sites.entry_id 6EYA _atom_sites.fract_transf_matrix[1][1] 0.014928 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011017 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010051 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 C4K A 1 301 1 C4K INH . C 3 HOH A 1 401 66 HOH HOH . C 3 HOH A 2 402 10 HOH HOH . C 3 HOH A 3 403 65 HOH HOH . C 3 HOH A 4 404 61 HOH HOH . C 3 HOH A 5 405 20 HOH HOH . C 3 HOH A 6 406 15 HOH HOH . C 3 HOH A 7 407 32 HOH HOH . C 3 HOH A 8 408 12 HOH HOH . C 3 HOH A 9 409 53 HOH HOH . C 3 HOH A 10 410 17 HOH HOH . C 3 HOH A 11 411 68 HOH HOH . C 3 HOH A 12 412 118 HOH HOH . C 3 HOH A 13 413 45 HOH HOH . C 3 HOH A 14 414 36 HOH HOH . C 3 HOH A 15 415 112 HOH HOH . C 3 HOH A 16 416 75 HOH HOH . C 3 HOH A 17 417 35 HOH HOH . C 3 HOH A 18 418 67 HOH HOH . C 3 HOH A 19 419 28 HOH HOH . C 3 HOH A 20 420 82 HOH HOH . C 3 HOH A 21 421 62 HOH HOH . C 3 HOH A 22 422 16 HOH HOH . C 3 HOH A 23 423 52 HOH HOH . C 3 HOH A 24 424 48 HOH HOH . C 3 HOH A 25 425 41 HOH HOH . C 3 HOH A 26 426 80 HOH HOH . C 3 HOH A 27 427 105 HOH HOH . C 3 HOH A 28 428 59 HOH HOH . C 3 HOH A 29 429 6 HOH HOH . C 3 HOH A 30 430 1 HOH HOH . C 3 HOH A 31 431 43 HOH HOH . C 3 HOH A 32 432 3 HOH HOH . C 3 HOH A 33 433 19 HOH HOH . C 3 HOH A 34 434 63 HOH HOH . C 3 HOH A 35 435 31 HOH HOH . C 3 HOH A 36 436 30 HOH HOH . C 3 HOH A 37 437 101 HOH HOH . C 3 HOH A 38 438 77 HOH HOH . C 3 HOH A 39 439 47 HOH HOH . C 3 HOH A 40 440 7 HOH HOH . C 3 HOH A 41 441 23 HOH HOH . C 3 HOH A 42 442 93 HOH HOH . C 3 HOH A 43 443 2 HOH HOH . C 3 HOH A 44 444 25 HOH HOH . C 3 HOH A 45 445 5 HOH HOH . C 3 HOH A 46 446 73 HOH HOH . C 3 HOH A 47 447 102 HOH HOH . C 3 HOH A 48 448 33 HOH HOH . C 3 HOH A 49 449 9 HOH HOH . C 3 HOH A 50 450 60 HOH HOH . C 3 HOH A 51 451 78 HOH HOH . C 3 HOH A 52 452 83 HOH HOH . C 3 HOH A 53 453 18 HOH HOH . C 3 HOH A 54 454 55 HOH HOH . C 3 HOH A 55 455 14 HOH HOH . C 3 HOH A 56 456 22 HOH HOH . C 3 HOH A 57 457 4 HOH HOH . C 3 HOH A 58 458 21 HOH HOH . C 3 HOH A 59 459 8 HOH HOH . C 3 HOH A 60 460 34 HOH HOH . C 3 HOH A 61 461 81 HOH HOH . C 3 HOH A 62 462 71 HOH HOH . C 3 HOH A 63 463 94 HOH HOH . C 3 HOH A 64 464 99 HOH HOH . C 3 HOH A 65 465 98 HOH HOH . C 3 HOH A 66 466 37 HOH HOH . C 3 HOH A 67 467 108 HOH HOH . C 3 HOH A 68 468 39 HOH HOH . C 3 HOH A 69 469 38 HOH HOH . C 3 HOH A 70 470 103 HOH HOH . C 3 HOH A 71 471 87 HOH HOH . C 3 HOH A 72 472 115 HOH HOH . C 3 HOH A 73 473 40 HOH HOH . C 3 HOH A 74 474 100 HOH HOH . C 3 HOH A 75 475 86 HOH HOH . C 3 HOH A 76 476 85 HOH HOH . C 3 HOH A 77 477 29 HOH HOH . C 3 HOH A 78 478 70 HOH HOH . C 3 HOH A 79 479 89 HOH HOH . C 3 HOH A 80 480 57 HOH HOH . C 3 HOH A 81 481 104 HOH HOH . C 3 HOH A 82 482 69 HOH HOH . C 3 HOH A 83 483 72 HOH HOH . C 3 HOH A 84 484 113 HOH HOH . C 3 HOH A 85 485 49 HOH HOH . C 3 HOH A 86 486 13 HOH HOH . C 3 HOH A 87 487 90 HOH HOH . C 3 HOH A 88 488 50 HOH HOH . C 3 HOH A 89 489 76 HOH HOH . C 3 HOH A 90 490 74 HOH HOH . C 3 HOH A 91 491 111 HOH HOH . C 3 HOH A 92 492 110 HOH HOH . C 3 HOH A 93 493 64 HOH HOH . C 3 HOH A 94 494 46 HOH HOH . C 3 HOH A 95 495 51 HOH HOH . C 3 HOH A 96 496 96 HOH HOH . C 3 HOH A 97 497 109 HOH HOH . C 3 HOH A 98 498 42 HOH HOH . C 3 HOH A 99 499 44 HOH HOH . C 3 HOH A 100 500 114 HOH HOH . C 3 HOH A 101 501 24 HOH HOH . C 3 HOH A 102 502 56 HOH HOH . C 3 HOH A 103 503 95 HOH HOH . C 3 HOH A 104 504 91 HOH HOH . C 3 HOH A 105 505 26 HOH HOH . C 3 HOH A 106 506 107 HOH HOH . C 3 HOH A 107 507 92 HOH HOH . C 3 HOH A 108 508 106 HOH HOH . C 3 HOH A 109 509 11 HOH HOH . C 3 HOH A 110 510 84 HOH HOH . C 3 HOH A 111 511 27 HOH HOH . C 3 HOH A 112 512 97 HOH HOH . C 3 HOH A 113 513 117 HOH HOH . C 3 HOH A 114 514 54 HOH HOH . C 3 HOH A 115 515 116 HOH HOH . C 3 HOH A 116 516 88 HOH HOH . C 3 HOH A 117 517 79 HOH HOH . C 3 HOH A 118 518 119 HOH HOH . C 3 HOH A 119 519 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 C4K . A . B 2 65.947 34.377 23.946 0.5 38.53 ? C1 C4K 301 A 1 HETATM 2 C C1 C4K . B . B 2 65.909 34.296 23.902 0.5 33.76 ? C1 C4K 301 A 1 HETATM 3 C C2 C4K . A . B 2 64.754 34.034 24.645 0.5 37.17 ? C2 C4K 301 A 1 HETATM 4 C C2 C4K . B . B 2 64.778 34.1 24.742 0.5 33.2 ? C2 C4K 301 A 1 HETATM 5 C C3 C4K . A . B 2 64.8 33.356 25.853 0.5 35.26 ? C3 C4K 301 A 1 HETATM 6 C C3 C4K . B . B 2 64.908 33.538 26.001 0.5 31.82 ? C3 C4K 301 A 1 HETATM 7 O O5 C4K . A . B 2 63.546 34.318 24.097 0.5 36.91 ? O5 C4K 301 A 1 HETATM 8 O O5 C4K . B . B 2 63.55 34.471 24.308 0.5 33.17 ? O5 C4K 301 A 1 HETATM 9 C C8 C4K . A . B 2 67.247 33.433 25.77 0.5 36.8 ? C8 C4K 301 A 1 HETATM 10 C C8 C4K . B . B 2 67.316 33.334 25.617 0.5 33.75 ? C8 C4K 301 A 1 HETATM 11 C C9 C4K . A . B 2 66.043 33.069 26.434 0.5 36.77 ? C9 C4K 301 A 1 HETATM 12 C C9 C4K . B . B 2 66.177 33.146 26.45 0.5 33.91 ? C9 C4K 301 A 1 HETATM 13 C C12 C4K . A . B 2 68.335 32.976 26.634 0.5 37.73 ? C12 C4K 301 A 1 HETATM 14 C C12 C4K . B . B 2 68.461 32.839 26.375 0.5 35.86 ? C12 C4K 301 A 1 HETATM 15 C C13 C4K . A . B 2 69.819 33.186 26.45 0.5 35.16 ? C13 C4K 301 A 1 HETATM 16 C C13 C4K . B . B 2 69.891 32.779 25.879 0.5 33.97 ? C13 C4K 301 A 1 HETATM 17 C C14 C4K . A . B 2 70.498 32.573 25.255 0.5 33.95 ? C14 C4K 301 A 1 HETATM 18 C C14 C4K . B . B 2 70.712 34.028 26.101 0.5 33.32 ? C14 C4K 301 A 1 HETATM 19 C C15 C4K . A . B 2 70.91 33.426 24.244 0.5 33.08 ? C15 C4K 301 A 1 HETATM 20 C C15 C4K . B . B 2 70.205 35.306 25.863 0.5 33.98 ? C15 C4K 301 A 1 HETATM 21 C C16 C4K . A . B 2 71.99 31.601 23.075 0.5 28.18 ? C16 C4K 301 A 1 HETATM 22 C C16 C4K . B . B 2 72.321 36.279 26.473 0.5 33.25 ? C16 C4K 301 A 1 HETATM 23 C C19 C4K . A . B 2 70.872 31.224 25.202 0.5 32.58 ? C19 C4K 301 A 1 HETATM 24 C C19 C4K . B . B 2 72.041 33.884 26.502 0.5 33.56 ? C19 C4K 301 A 1 HETATM 25 C C20 C4K . A . B 2 71.987 29.325 23.966 0.5 27.69 ? C20 C4K 301 A 1 HETATM 26 C C20 C4K . B . B 2 74.236 34.85 27.212 0.5 28.94 ? C20 C4K 301 A 1 HETATM 27 C C21 C4K . A . B 2 69.625 37.341 24.146 0.5 44 ? C21 C4K 301 A 1 HETATM 28 C C21 C4K . B . B 2 69.168 38.125 23.428 0.5 34.59 ? C21 C4K 301 A 1 HETATM 29 C C22 C4K . A . B 2 68.719 36.878 23.2 0.5 42.82 ? C22 C4K 301 A 1 HETATM 30 C C22 C4K . B . B 2 68.35 37.3 22.668 0.5 33.69 ? C22 C4K 301 A 1 HETATM 31 C C24 C4K . A . B 2 66.861 37.454 24.658 0.5 44.66 ? C24 C4K 301 A 1 HETATM 32 C C24 C4K . B . B 2 66.58 37.496 24.315 0.5 36.89 ? C24 C4K 301 A 1 HETATM 33 N N25 C4K . A . B 2 66.446 36.376 22.497 0.5 42.26 ? N25 C4K 301 A 1 HETATM 34 N N25 C4K . B . B 2 66.219 36.195 22.28 0.5 36.39 ? N25 C4K 301 A 1 HETATM 35 C C27 C4K . A . B 2 69.15 37.853 25.355 0.5 45.67 ? C27 C4K 301 A 1 HETATM 36 C C27 C4K . B . B 2 68.705 38.62 24.645 0.5 37.08 ? C27 C4K 301 A 1 HETATM 37 C C30 C4K . A . B 2 68.816 39.113 27.17 0.5 47.24 ? C30 C4K 301 A 1 HETATM 38 C C30 C4K . B . B 2 68.48 39.389 26.749 0.5 40.47 ? C30 C4K 301 A 1 HETATM 39 C C4 C4K . A . B 2 67.192 34.05 24.515 0.5 37.06 ? C4 C4K 301 A 1 HETATM 40 C C4 C4K . B . B 2 67.179 33.899 24.343 0.5 32.83 ? C4 C4K 301 A 1 HETATM 41 C C6 C4K . A . B 2 65.837 35.152 22.675 0.5 40.22 ? C6 C4K 301 A 1 HETATM 42 C C6 C4K . B . B 2 65.721 34.957 22.587 0.5 34.44 ? C6 C4K 301 A 1 HETATM 43 O O7 C4K . A . B 2 65.086 34.712 21.815 0.5 39.61 ? O7 C4K 301 A 1 HETATM 44 O O7 C4K . B . B 2 65.015 34.392 21.771 0.5 32.86 ? O7 C4K 301 A 1 HETATM 45 N N10 C4K . A . B 2 66.408 32.475 27.611 0.5 36.73 ? N10 C4K 301 A 1 HETATM 46 N N10 C4K . B . B 2 66.625 32.58 27.616 0.5 34.67 ? N10 C4K 301 A 1 HETATM 47 N N11 C4K . A . B 2 67.796 32.485 27.714 0.5 38.04 ? N11 C4K 301 A 1 HETATM 48 N N11 C4K . B . B 2 68.01 32.406 27.522 0.5 36.57 ? N11 C4K 301 A 1 HETATM 49 C C17 C4K . A . B 2 71.619 30.76 24.104 0.5 30.09 ? C17 C4K 301 A 1 HETATM 50 C C17 C4K . B . B 2 72.835 35.005 26.709 0.5 31.63 ? C17 C4K 301 A 1 HETATM 51 C C18 C4K . A . B 2 71.635 32.929 23.161 0.5 31.12 ? C18 C4K 301 A 1 HETATM 52 C C18 C4K . B . B 2 71.008 36.431 26.053 0.5 33.27 ? C18 C4K 301 A 1 HETATM 53 C C23 C4K . A . B 2 67.334 36.921 23.45 0.5 43.78 ? C23 C4K 301 A 1 HETATM 54 C C23 C4K . B . B 2 67.053 36.973 23.107 0.5 36.23 ? C23 C4K 301 A 1 HETATM 55 C C26 C4K . A . B 2 66.293 37.114 21.232 0.5 42.55 ? C26 C4K 301 A 1 HETATM 56 C C26 C4K . B . B 2 65.949 36.759 20.952 0.5 38.06 ? C26 C4K 301 A 1 HETATM 57 C C28 C4K . A . B 2 67.77 37.897 25.613 0.5 44.94 ? C28 C4K 301 A 1 HETATM 58 C C28 C4K . B . B 2 67.414 38.29 25.093 0.5 36.32 ? C28 C4K 301 A 1 HETATM 59 O O29 C4K . A . B 2 67.581 38.44 26.847 0.5 46.89 ? O29 C4K 301 A 1 HETATM 60 O O29 C4K . B . B 2 67.206 38.856 26.31 0.5 39.55 ? O29 C4K 301 A 1 HETATM 61 O O31 C4K . A . B 2 69.811 38.376 26.433 0.5 46.72 ? O31 C4K 301 A 1 HETATM 62 O O31 C4K . B . B 2 69.32 39.417 25.575 0.5 39 ? O31 C4K 301 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 62 #