data_6EYF # _model_server_result.job_id Pacvku0USLfoxKwHHkCfjQ _model_server_result.datetime_utc '2024-11-13 12:24:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eyf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 6EYF # _exptl.entry_id 6EYF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec 3.1.1.8 # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EYF _cell.length_a 154.183 _cell.length_b 154.183 _cell.length_c 127.752 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EYF _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 63 A CYS 65 1_555 A SG CYS 90 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 250 A CYS 252 1_555 A SG CYS 261 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 A SG CYS 398 A CYS 400 1_555 A SG CYS 517 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? covale ? covale1 A ND2 ASN 55 A ASN 57 1_555 B C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 A ND2 ASN 104 A ASN 106 1_555 C C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 A C GLU 195 A GLU 197 1_555 A N BXT 196 A BXT 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C BXT 196 A BXT 198 1_555 A N ALA 197 A ALA 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 317 n n C1 O1 NAG sing 318 n n C1 O5 NAG sing 319 n n C1 H1 NAG sing 320 n n C2 C3 NAG sing 321 n n C2 N2 NAG sing 322 n n C2 H2 NAG sing 323 n n C3 C4 NAG sing 324 n n C3 O3 NAG sing 325 n n C3 H3 NAG sing 326 n n C4 C5 NAG sing 327 n n C4 O4 NAG sing 328 n n C4 H4 NAG sing 329 n n C5 C6 NAG sing 330 n n C5 O5 NAG sing 331 n n C5 H5 NAG sing 332 n n C6 O6 NAG sing 333 n n C6 H61 NAG sing 334 n n C6 H62 NAG sing 335 n n C7 C8 NAG sing 336 n n C7 N2 NAG sing 337 n n C7 O7 NAG doub 338 n n C8 H81 NAG sing 339 n n C8 H82 NAG sing 340 n n C8 H83 NAG sing 341 n n N2 HN2 NAG sing 342 n n O1 HO1 NAG sing 343 n n O3 HO3 NAG sing 344 n n O4 HO4 NAG sing 345 n n O6 HO6 NAG sing 346 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6EYF _atom_sites.fract_transf_matrix[1][1] 0.006486 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006486 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007828 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 601 601 NAG NAG . C 2 NAG A 1 602 602 NAG NAG . D 2 NAG A 1 603 603 NAG NAG . E 2 NAG A 1 604 604 NAG NAG . F 3 BY2 A 1 605 1 BY2 R11 . G 4 GOL A 1 606 2 GOL GOL . H 4 GOL A 1 607 3 GOL GOL . I 4 GOL A 1 608 4 GOL GOL . J 4 GOL A 1 609 5 GOL GOL . K 5 SO4 A 1 610 6 SO4 SO4 . L 6 HOH A 1 701 61 HOH HOH . L 6 HOH A 2 702 64 HOH HOH . L 6 HOH A 3 703 54 HOH HOH . L 6 HOH A 4 704 83 HOH HOH . L 6 HOH A 5 705 26 HOH HOH . L 6 HOH A 6 706 21 HOH HOH . L 6 HOH A 7 707 52 HOH HOH . L 6 HOH A 8 708 38 HOH HOH . L 6 HOH A 9 709 13 HOH HOH . L 6 HOH A 10 710 17 HOH HOH . L 6 HOH A 11 711 40 HOH HOH . L 6 HOH A 12 712 9 HOH HOH . L 6 HOH A 13 713 57 HOH HOH . L 6 HOH A 14 714 66 HOH HOH . L 6 HOH A 15 715 50 HOH HOH . L 6 HOH A 16 716 1 HOH HOH . L 6 HOH A 17 717 19 HOH HOH . L 6 HOH A 18 718 25 HOH HOH . L 6 HOH A 19 719 29 HOH HOH . L 6 HOH A 20 720 79 HOH HOH . L 6 HOH A 21 721 41 HOH HOH . L 6 HOH A 22 722 51 HOH HOH . L 6 HOH A 23 723 76 HOH HOH . L 6 HOH A 24 724 58 HOH HOH . L 6 HOH A 25 725 23 HOH HOH . L 6 HOH A 26 726 3 HOH HOH . L 6 HOH A 27 727 53 HOH HOH . L 6 HOH A 28 728 34 HOH HOH . L 6 HOH A 29 729 2 HOH HOH . L 6 HOH A 30 730 37 HOH HOH . L 6 HOH A 31 731 10 HOH HOH . L 6 HOH A 32 732 47 HOH HOH . L 6 HOH A 33 733 82 HOH HOH . L 6 HOH A 34 734 6 HOH HOH . L 6 HOH A 35 735 43 HOH HOH . L 6 HOH A 36 736 22 HOH HOH . L 6 HOH A 37 737 62 HOH HOH . L 6 HOH A 38 738 87 HOH HOH . L 6 HOH A 39 739 70 HOH HOH . L 6 HOH A 40 740 63 HOH HOH . L 6 HOH A 41 741 36 HOH HOH . L 6 HOH A 42 742 28 HOH HOH . L 6 HOH A 43 743 33 HOH HOH . L 6 HOH A 44 744 5 HOH HOH . L 6 HOH A 45 745 60 HOH HOH . L 6 HOH A 46 746 81 HOH HOH . L 6 HOH A 47 747 8 HOH HOH . L 6 HOH A 48 748 32 HOH HOH . L 6 HOH A 49 749 46 HOH HOH . L 6 HOH A 50 750 68 HOH HOH . L 6 HOH A 51 751 65 HOH HOH . L 6 HOH A 52 752 67 HOH HOH . L 6 HOH A 53 753 30 HOH HOH . L 6 HOH A 54 754 24 HOH HOH . L 6 HOH A 55 755 11 HOH HOH . L 6 HOH A 56 756 35 HOH HOH . L 6 HOH A 57 757 20 HOH HOH . L 6 HOH A 58 758 71 HOH HOH . L 6 HOH A 59 759 77 HOH HOH . L 6 HOH A 60 760 7 HOH HOH . L 6 HOH A 61 761 48 HOH HOH . L 6 HOH A 62 762 88 HOH HOH . L 6 HOH A 63 763 42 HOH HOH . L 6 HOH A 64 764 16 HOH HOH . L 6 HOH A 65 765 18 HOH HOH . L 6 HOH A 66 766 56 HOH HOH . L 6 HOH A 67 767 73 HOH HOH . L 6 HOH A 68 768 49 HOH HOH . L 6 HOH A 69 769 14 HOH HOH . L 6 HOH A 70 770 45 HOH HOH . L 6 HOH A 71 771 55 HOH HOH . L 6 HOH A 72 772 80 HOH HOH . L 6 HOH A 73 773 69 HOH HOH . L 6 HOH A 74 774 72 HOH HOH . L 6 HOH A 75 775 85 HOH HOH . L 6 HOH A 76 776 39 HOH HOH . L 6 HOH A 77 777 94 HOH HOH . L 6 HOH A 78 778 92 HOH HOH . L 6 HOH A 79 779 84 HOH HOH . L 6 HOH A 80 780 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 2 54.658 27.274 9.369 1 58.39 ? C1 NAG 603 A 1 HETATM 2 C C2 NAG . . . D 2 55.607 26.871 8.291 1 66.86 ? C2 NAG 603 A 1 HETATM 3 C C3 NAG . . . D 2 56.374 25.63 8.746 1 63.76 ? C3 NAG 603 A 1 HETATM 4 C C4 NAG . . . D 2 57.019 25.837 10.113 1 72.57 ? C4 NAG 603 A 1 HETATM 5 C C5 NAG . . . D 2 55.989 26.404 11.1 1 59.75 ? C5 NAG 603 A 1 HETATM 6 C C6 NAG . . . D 2 56.529 26.809 12.452 1 56.15 ? C6 NAG 603 A 1 HETATM 7 C C7 NAG . . . D 2 54.57 27.652 6.158 1 70.47 ? C7 NAG 603 A 1 HETATM 8 C C8 NAG . . . D 2 53.914 27.227 4.867 1 68.64 ? C8 NAG 603 A 1 HETATM 9 N N2 NAG . . . D 2 54.958 26.658 7 1 75.7 ? N2 NAG 603 A 1 HETATM 10 O O3 NAG . . . D 2 57.327 25.171 7.793 1 70 ? O3 NAG 603 A 1 HETATM 11 O O4 NAG . . . D 2 57.527 24.576 10.541 1 68.24 ? O4 NAG 603 A 1 HETATM 12 O O5 NAG . . . D 2 55.385 27.583 10.552 1 65.11 ? O5 NAG 603 A 1 HETATM 13 O O6 NAG . . . D 2 57.508 25.91 12.948 1 79.61 ? O6 NAG 603 A 1 HETATM 14 O O7 NAG . . . D 2 54.734 28.849 6.429 1 63.39 ? O7 NAG 603 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #