data_6EYF # _model_server_result.job_id Th2cty8pJiwRIW7zS08Mgw _model_server_result.datetime_utc '2024-11-13 12:28:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eyf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":605}' # _entry.id 6EYF # _exptl.entry_id 6EYF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.336 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[3-[(1~{R})-1-(dimethylamino)ethyl]-4-oxidanyl-phenyl] ~{N}-ethyl-~{N}-methyl-carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EYF _cell.length_a 154.183 _cell.length_b 154.183 _cell.length_c 127.752 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EYF _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 63 A CYS 65 1_555 A SG CYS 90 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 250 A CYS 252 1_555 A SG CYS 261 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 A SG CYS 398 A CYS 400 1_555 A SG CYS 517 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? covale ? covale1 A ND2 ASN 55 A ASN 57 1_555 B C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 A ND2 ASN 104 A ASN 106 1_555 C C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 A C GLU 195 A GLU 197 1_555 A N BXT 196 A BXT 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C BXT 196 A BXT 198 1_555 A N ALA 197 A ALA 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C14 H22 N2 O3' _chem_comp.formula_weight 266.336 _chem_comp.id BY2 _chem_comp.mon_nstd_flag . _chem_comp.name '[3-[(1~{R})-1-(dimethylamino)ethyl]-4-oxidanyl-phenyl] ~{N}-ethyl-~{N}-methyl-carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C08 C07 BY2 sing 96 n n C09 N01 BY2 sing 97 n n C07 N01 BY2 sing 98 n n C07 C06 BY2 sing 99 n n N01 C10 BY2 sing 100 n n O02 C01 BY2 sing 101 n n C06 C01 BY2 doub 102 n y C06 C05 BY2 sing 103 n y C01 C02 BY2 sing 104 n y C05 C04 BY2 doub 105 n y C02 C03 BY2 doub 106 n y C04 C03 BY2 sing 107 n y C04 O01 BY2 sing 108 n n O03 C11 BY2 doub 109 n n O01 C11 BY2 sing 110 n n C11 N02 BY2 sing 111 n n N02 C12 BY2 sing 112 n n N02 C14 BY2 sing 113 n n C12 C13 BY2 sing 114 n n C10 H1 BY2 sing 115 n n C10 H2 BY2 sing 116 n n C10 H3 BY2 sing 117 n n C12 H4 BY2 sing 118 n n C12 H5 BY2 sing 119 n n C13 H6 BY2 sing 120 n n C13 H7 BY2 sing 121 n n C13 H8 BY2 sing 122 n n C14 H9 BY2 sing 123 n n C14 H10 BY2 sing 124 n n C14 H11 BY2 sing 125 n n C02 H12 BY2 sing 126 n n C03 H13 BY2 sing 127 n n C05 H14 BY2 sing 128 n n C07 H15 BY2 sing 129 n n C08 H16 BY2 sing 130 n n C08 H17 BY2 sing 131 n n C08 H18 BY2 sing 132 n n C09 H19 BY2 sing 133 n n C09 H20 BY2 sing 134 n n C09 H21 BY2 sing 135 n n O02 H23 BY2 sing 136 n n # _atom_sites.entry_id 6EYF _atom_sites.fract_transf_matrix[1][1] 0.006486 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006486 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007828 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 601 601 NAG NAG . C 2 NAG A 1 602 602 NAG NAG . D 2 NAG A 1 603 603 NAG NAG . E 2 NAG A 1 604 604 NAG NAG . F 3 BY2 A 1 605 1 BY2 R11 . G 4 GOL A 1 606 2 GOL GOL . H 4 GOL A 1 607 3 GOL GOL . I 4 GOL A 1 608 4 GOL GOL . J 4 GOL A 1 609 5 GOL GOL . K 5 SO4 A 1 610 6 SO4 SO4 . L 6 HOH A 1 701 61 HOH HOH . L 6 HOH A 2 702 64 HOH HOH . L 6 HOH A 3 703 54 HOH HOH . L 6 HOH A 4 704 83 HOH HOH . L 6 HOH A 5 705 26 HOH HOH . L 6 HOH A 6 706 21 HOH HOH . L 6 HOH A 7 707 52 HOH HOH . L 6 HOH A 8 708 38 HOH HOH . L 6 HOH A 9 709 13 HOH HOH . L 6 HOH A 10 710 17 HOH HOH . L 6 HOH A 11 711 40 HOH HOH . L 6 HOH A 12 712 9 HOH HOH . L 6 HOH A 13 713 57 HOH HOH . L 6 HOH A 14 714 66 HOH HOH . L 6 HOH A 15 715 50 HOH HOH . L 6 HOH A 16 716 1 HOH HOH . L 6 HOH A 17 717 19 HOH HOH . L 6 HOH A 18 718 25 HOH HOH . L 6 HOH A 19 719 29 HOH HOH . L 6 HOH A 20 720 79 HOH HOH . L 6 HOH A 21 721 41 HOH HOH . L 6 HOH A 22 722 51 HOH HOH . L 6 HOH A 23 723 76 HOH HOH . L 6 HOH A 24 724 58 HOH HOH . L 6 HOH A 25 725 23 HOH HOH . L 6 HOH A 26 726 3 HOH HOH . L 6 HOH A 27 727 53 HOH HOH . L 6 HOH A 28 728 34 HOH HOH . L 6 HOH A 29 729 2 HOH HOH . L 6 HOH A 30 730 37 HOH HOH . L 6 HOH A 31 731 10 HOH HOH . L 6 HOH A 32 732 47 HOH HOH . L 6 HOH A 33 733 82 HOH HOH . L 6 HOH A 34 734 6 HOH HOH . L 6 HOH A 35 735 43 HOH HOH . L 6 HOH A 36 736 22 HOH HOH . L 6 HOH A 37 737 62 HOH HOH . L 6 HOH A 38 738 87 HOH HOH . L 6 HOH A 39 739 70 HOH HOH . L 6 HOH A 40 740 63 HOH HOH . L 6 HOH A 41 741 36 HOH HOH . L 6 HOH A 42 742 28 HOH HOH . L 6 HOH A 43 743 33 HOH HOH . L 6 HOH A 44 744 5 HOH HOH . L 6 HOH A 45 745 60 HOH HOH . L 6 HOH A 46 746 81 HOH HOH . L 6 HOH A 47 747 8 HOH HOH . L 6 HOH A 48 748 32 HOH HOH . L 6 HOH A 49 749 46 HOH HOH . L 6 HOH A 50 750 68 HOH HOH . L 6 HOH A 51 751 65 HOH HOH . L 6 HOH A 52 752 67 HOH HOH . L 6 HOH A 53 753 30 HOH HOH . L 6 HOH A 54 754 24 HOH HOH . L 6 HOH A 55 755 11 HOH HOH . L 6 HOH A 56 756 35 HOH HOH . L 6 HOH A 57 757 20 HOH HOH . L 6 HOH A 58 758 71 HOH HOH . L 6 HOH A 59 759 77 HOH HOH . L 6 HOH A 60 760 7 HOH HOH . L 6 HOH A 61 761 48 HOH HOH . L 6 HOH A 62 762 88 HOH HOH . L 6 HOH A 63 763 42 HOH HOH . L 6 HOH A 64 764 16 HOH HOH . L 6 HOH A 65 765 18 HOH HOH . L 6 HOH A 66 766 56 HOH HOH . L 6 HOH A 67 767 73 HOH HOH . L 6 HOH A 68 768 49 HOH HOH . L 6 HOH A 69 769 14 HOH HOH . L 6 HOH A 70 770 45 HOH HOH . L 6 HOH A 71 771 55 HOH HOH . L 6 HOH A 72 772 80 HOH HOH . L 6 HOH A 73 773 69 HOH HOH . L 6 HOH A 74 774 72 HOH HOH . L 6 HOH A 75 775 85 HOH HOH . L 6 HOH A 76 776 39 HOH HOH . L 6 HOH A 77 777 94 HOH HOH . L 6 HOH A 78 778 92 HOH HOH . L 6 HOH A 79 779 84 HOH HOH . L 6 HOH A 80 780 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 BY2 . . . F 3 41.216 23.904 20.918 1 52.36 ? C10 BY2 605 A 1 HETATM 2 C C11 BY2 . . . F 3 44.68 18.466 26.353 1 57.21 ? C11 BY2 605 A 1 HETATM 3 C C12 BY2 . . . F 3 46.302 17.044 27.701 1 66.11 ? C12 BY2 605 A 1 HETATM 4 C C13 BY2 . . . F 3 45.248 16.048 28.229 1 51.73 ? C13 BY2 605 A 1 HETATM 5 C C14 BY2 . . . F 3 45.879 19.45 28.322 1 57.82 ? C14 BY2 605 A 1 HETATM 6 C C01 BY2 . . . F 3 40.954 19.778 23.151 1 55.57 ? C01 BY2 605 A 1 HETATM 7 C C02 BY2 . . . F 3 40.738 18.872 24.188 1 55.13 ? C02 BY2 605 A 1 HETATM 8 C C03 BY2 . . . F 3 41.744 18.831 25.2 1 52.4 ? C03 BY2 605 A 1 HETATM 9 C C04 BY2 . . . F 3 42.89 19.665 25.108 1 58.4 ? C04 BY2 605 A 1 HETATM 10 C C05 BY2 . . . F 3 43.043 20.575 23.997 1 54.27 ? C05 BY2 605 A 1 HETATM 11 C C06 BY2 . . . F 3 42.022 20.629 22.95 1 50.03 ? C06 BY2 605 A 1 HETATM 12 C C07 BY2 . . . F 3 42.22 21.654 21.777 1 48.11 ? C07 BY2 605 A 1 HETATM 13 C C08 BY2 . . . F 3 42.275 21.086 20.332 1 51.1 ? C08 BY2 605 A 1 HETATM 14 C C09 BY2 . . . F 3 40.694 23.118 23.2 1 50.42 ? C09 BY2 605 A 1 HETATM 15 N N01 BY2 . . . F 3 40.987 22.674 21.8 1 60.4 ? N01 BY2 605 A 1 HETATM 16 N N02 BY2 . . . F 3 45.757 18.359 27.334 1 58.84 ? N02 BY2 605 A 1 HETATM 17 O O01 BY2 . . . F 3 43.946 19.665 26.131 1 58.91 ? O01 BY2 605 A 1 HETATM 18 O O02 BY2 . . . F 3 39.926 19.848 22.106 1 48.28 ? O02 BY2 605 A 1 HETATM 19 O O03 BY2 . . . F 3 44.355 17.493 25.659 1 60.03 ? O03 BY2 605 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 19 #