data_6EYH # _model_server_result.job_id KZYbeSADqTxkMc-H_mMBPQ _model_server_result.datetime_utc '2024-11-25 00:07:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eyh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6EYH # _exptl.entry_id 6EYH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 136.213 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-(dimethyl-lambda~4~-sulfanyl)propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.14 _cell.angle_gamma 90 _cell.entry_id 6EYH _cell.length_a 29.77 _cell.length_b 65.89 _cell.length_c 63.58 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EYH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H12 O2 S' _chem_comp.formula_weight 136.213 _chem_comp.id DQY _chem_comp.mon_nstd_flag . _chem_comp.name '3-(dimethyl-lambda~4~-sulfanyl)propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CM1 S DQY sing 83 n n CM2 S DQY sing 84 n n S C3 DQY sing 85 n n C2 C1 DQY sing 86 n n C1 O1 DQY doub 87 n n C1 O2 DQY sing 88 n n C3 C2 DQY sing 89 n n C2 H2 DQY sing 90 n n C2 H2A DQY sing 91 n n O2 HO2 DQY sing 92 n n C3 H3 DQY sing 93 n n C3 H3A DQY sing 94 n n CM1 HM1 DQY sing 95 n n CM1 HM1A DQY sing 96 n n CM1 HM1B DQY sing 97 n n CM2 HM2 DQY sing 98 n n CM2 HM2A DQY sing 99 n n CM2 HM2B DQY sing 100 n n S HS DQY sing 101 n n # _atom_sites.entry_id 6EYH _atom_sites.fract_transf_matrix[1][1] 0.033591 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001256 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015177 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015739 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DQY A 1 301 1 DQY DQY . C 3 HOH A 1 401 382 HOH HOH . C 3 HOH A 2 402 55 HOH HOH . C 3 HOH A 3 403 90 HOH HOH . C 3 HOH A 4 404 414 HOH HOH . C 3 HOH A 5 405 44 HOH HOH . C 3 HOH A 6 406 423 HOH HOH . C 3 HOH A 7 407 303 HOH HOH . C 3 HOH A 8 408 220 HOH HOH . C 3 HOH A 9 409 107 HOH HOH . C 3 HOH A 10 410 243 HOH HOH . C 3 HOH A 11 411 436 HOH HOH . C 3 HOH A 12 412 79 HOH HOH . C 3 HOH A 13 413 102 HOH HOH . C 3 HOH A 14 414 422 HOH HOH . C 3 HOH A 15 415 155 HOH HOH . C 3 HOH A 16 416 43 HOH HOH . C 3 HOH A 17 417 183 HOH HOH . C 3 HOH A 18 418 172 HOH HOH . C 3 HOH A 19 419 40 HOH HOH . C 3 HOH A 20 420 144 HOH HOH . C 3 HOH A 21 421 94 HOH HOH . C 3 HOH A 22 422 120 HOH HOH . C 3 HOH A 23 423 24 HOH HOH . C 3 HOH A 24 424 46 HOH HOH . C 3 HOH A 25 425 114 HOH HOH . C 3 HOH A 26 426 417 HOH HOH . C 3 HOH A 27 427 56 HOH HOH . C 3 HOH A 28 428 318 HOH HOH . C 3 HOH A 29 429 186 HOH HOH . C 3 HOH A 30 430 34 HOH HOH . C 3 HOH A 31 431 92 HOH HOH . C 3 HOH A 32 432 103 HOH HOH . C 3 HOH A 33 433 276 HOH HOH . C 3 HOH A 34 434 429 HOH HOH . C 3 HOH A 35 435 191 HOH HOH . C 3 HOH A 36 436 349 HOH HOH . C 3 HOH A 37 437 22 HOH HOH . C 3 HOH A 38 438 39 HOH HOH . C 3 HOH A 39 439 59 HOH HOH . C 3 HOH A 40 440 66 HOH HOH . C 3 HOH A 41 441 250 HOH HOH . C 3 HOH A 42 442 163 HOH HOH . C 3 HOH A 43 443 9 HOH HOH . C 3 HOH A 44 444 179 HOH HOH . C 3 HOH A 45 445 31 HOH HOH . C 3 HOH A 46 446 145 HOH HOH . C 3 HOH A 47 447 1 HOH HOH . C 3 HOH A 48 448 10 HOH HOH . C 3 HOH A 49 449 237 HOH HOH . C 3 HOH A 50 450 128 HOH HOH . C 3 HOH A 51 451 19 HOH HOH . C 3 HOH A 52 452 229 HOH HOH . C 3 HOH A 53 453 7 HOH HOH . C 3 HOH A 54 454 282 HOH HOH . C 3 HOH A 55 455 224 HOH HOH . C 3 HOH A 56 456 35 HOH HOH . C 3 HOH A 57 457 6 HOH HOH . C 3 HOH A 58 458 126 HOH HOH . C 3 HOH A 59 459 415 HOH HOH . C 3 HOH A 60 460 33 HOH HOH . C 3 HOH A 61 461 3 HOH HOH . C 3 HOH A 62 462 203 HOH HOH . C 3 HOH A 63 463 162 HOH HOH . C 3 HOH A 64 464 334 HOH HOH . C 3 HOH A 65 465 60 HOH HOH . C 3 HOH A 66 466 26 HOH HOH . C 3 HOH A 67 467 18 HOH HOH . C 3 HOH A 68 468 262 HOH HOH . C 3 HOH A 69 469 170 HOH HOH . C 3 HOH A 70 470 32 HOH HOH . C 3 HOH A 71 471 62 HOH HOH . C 3 HOH A 72 472 289 HOH HOH . C 3 HOH A 73 473 51 HOH HOH . C 3 HOH A 74 474 52 HOH HOH . C 3 HOH A 75 475 100 HOH HOH . C 3 HOH A 76 476 93 HOH HOH . C 3 HOH A 77 477 61 HOH HOH . C 3 HOH A 78 478 143 HOH HOH . C 3 HOH A 79 479 124 HOH HOH . C 3 HOH A 80 480 430 HOH HOH . C 3 HOH A 81 481 30 HOH HOH . C 3 HOH A 82 482 123 HOH HOH . C 3 HOH A 83 483 67 HOH HOH . C 3 HOH A 84 484 15 HOH HOH . C 3 HOH A 85 485 194 HOH HOH . C 3 HOH A 86 486 65 HOH HOH . C 3 HOH A 87 487 127 HOH HOH . C 3 HOH A 88 488 240 HOH HOH . C 3 HOH A 89 489 23 HOH HOH . C 3 HOH A 90 490 231 HOH HOH . C 3 HOH A 91 491 68 HOH HOH . C 3 HOH A 92 492 97 HOH HOH . C 3 HOH A 93 493 171 HOH HOH . C 3 HOH A 94 494 20 HOH HOH . C 3 HOH A 95 495 201 HOH HOH . C 3 HOH A 96 496 95 HOH HOH . C 3 HOH A 97 497 149 HOH HOH . C 3 HOH A 98 498 49 HOH HOH . C 3 HOH A 99 499 125 HOH HOH . C 3 HOH A 100 500 21 HOH HOH . C 3 HOH A 101 501 77 HOH HOH . C 3 HOH A 102 502 302 HOH HOH . C 3 HOH A 103 503 164 HOH HOH . C 3 HOH A 104 504 136 HOH HOH . C 3 HOH A 105 505 257 HOH HOH . C 3 HOH A 106 506 371 HOH HOH . C 3 HOH A 107 507 182 HOH HOH . C 3 HOH A 108 508 146 HOH HOH . C 3 HOH A 109 509 435 HOH HOH . C 3 HOH A 110 510 75 HOH HOH . C 3 HOH A 111 511 27 HOH HOH . C 3 HOH A 112 512 108 HOH HOH . C 3 HOH A 113 513 420 HOH HOH . C 3 HOH A 114 514 47 HOH HOH . C 3 HOH A 115 515 277 HOH HOH . C 3 HOH A 116 516 83 HOH HOH . C 3 HOH A 117 517 199 HOH HOH . C 3 HOH A 118 518 167 HOH HOH . C 3 HOH A 119 519 81 HOH HOH . C 3 HOH A 120 520 8 HOH HOH . C 3 HOH A 121 521 115 HOH HOH . C 3 HOH A 122 522 192 HOH HOH . C 3 HOH A 123 523 175 HOH HOH . C 3 HOH A 124 524 215 HOH HOH . C 3 HOH A 125 525 98 HOH HOH . C 3 HOH A 126 526 157 HOH HOH . C 3 HOH A 127 527 272 HOH HOH . C 3 HOH A 128 528 134 HOH HOH . C 3 HOH A 129 529 41 HOH HOH . C 3 HOH A 130 530 85 HOH HOH . C 3 HOH A 131 531 13 HOH HOH . C 3 HOH A 132 532 111 HOH HOH . C 3 HOH A 133 533 25 HOH HOH . C 3 HOH A 134 534 355 HOH HOH . C 3 HOH A 135 535 96 HOH HOH . C 3 HOH A 136 536 216 HOH HOH . C 3 HOH A 137 537 29 HOH HOH . C 3 HOH A 138 538 113 HOH HOH . C 3 HOH A 139 539 241 HOH HOH . C 3 HOH A 140 540 5 HOH HOH . C 3 HOH A 141 541 57 HOH HOH . C 3 HOH A 142 542 304 HOH HOH . C 3 HOH A 143 543 116 HOH HOH . C 3 HOH A 144 544 50 HOH HOH . C 3 HOH A 145 545 63 HOH HOH . C 3 HOH A 146 546 418 HOH HOH . C 3 HOH A 147 547 122 HOH HOH . C 3 HOH A 148 548 4 HOH HOH . C 3 HOH A 149 549 99 HOH HOH . C 3 HOH A 150 550 38 HOH HOH . C 3 HOH A 151 551 72 HOH HOH . C 3 HOH A 152 552 421 HOH HOH . C 3 HOH A 153 553 209 HOH HOH . C 3 HOH A 154 554 17 HOH HOH . C 3 HOH A 155 555 74 HOH HOH . C 3 HOH A 156 556 129 HOH HOH . C 3 HOH A 157 557 137 HOH HOH . C 3 HOH A 158 558 148 HOH HOH . C 3 HOH A 159 559 431 HOH HOH . C 3 HOH A 160 560 58 HOH HOH . C 3 HOH A 161 561 425 HOH HOH . C 3 HOH A 162 562 190 HOH HOH . C 3 HOH A 163 563 86 HOH HOH . C 3 HOH A 164 564 12 HOH HOH . C 3 HOH A 165 565 205 HOH HOH . C 3 HOH A 166 566 48 HOH HOH . C 3 HOH A 167 567 394 HOH HOH . C 3 HOH A 168 568 78 HOH HOH . C 3 HOH A 169 569 184 HOH HOH . C 3 HOH A 170 570 187 HOH HOH . C 3 HOH A 171 571 138 HOH HOH . C 3 HOH A 172 572 28 HOH HOH . C 3 HOH A 173 573 426 HOH HOH . C 3 HOH A 174 574 42 HOH HOH . C 3 HOH A 175 575 91 HOH HOH . C 3 HOH A 176 576 87 HOH HOH . C 3 HOH A 177 577 121 HOH HOH . C 3 HOH A 178 578 253 HOH HOH . C 3 HOH A 179 579 112 HOH HOH . C 3 HOH A 180 580 249 HOH HOH . C 3 HOH A 181 581 64 HOH HOH . C 3 HOH A 182 582 88 HOH HOH . C 3 HOH A 183 583 139 HOH HOH . C 3 HOH A 184 584 244 HOH HOH . C 3 HOH A 185 585 176 HOH HOH . C 3 HOH A 186 586 37 HOH HOH . C 3 HOH A 187 587 36 HOH HOH . C 3 HOH A 188 588 16 HOH HOH . C 3 HOH A 189 589 317 HOH HOH . C 3 HOH A 190 590 2 HOH HOH . C 3 HOH A 191 591 105 HOH HOH . C 3 HOH A 192 592 378 HOH HOH . C 3 HOH A 193 593 322 HOH HOH . C 3 HOH A 194 594 419 HOH HOH . C 3 HOH A 195 595 214 HOH HOH . C 3 HOH A 196 596 82 HOH HOH . C 3 HOH A 197 597 433 HOH HOH . C 3 HOH A 198 598 424 HOH HOH . C 3 HOH A 199 599 69 HOH HOH . C 3 HOH A 200 600 70 HOH HOH . C 3 HOH A 201 601 109 HOH HOH . C 3 HOH A 202 602 340 HOH HOH . C 3 HOH A 203 603 84 HOH HOH . C 3 HOH A 204 604 118 HOH HOH . C 3 HOH A 205 605 110 HOH HOH . C 3 HOH A 206 606 54 HOH HOH . C 3 HOH A 207 607 71 HOH HOH . C 3 HOH A 208 608 131 HOH HOH . C 3 HOH A 209 609 150 HOH HOH . C 3 HOH A 210 610 73 HOH HOH . C 3 HOH A 211 611 393 HOH HOH . C 3 HOH A 212 612 140 HOH HOH . C 3 HOH A 213 613 14 HOH HOH . C 3 HOH A 214 614 11 HOH HOH . C 3 HOH A 215 615 141 HOH HOH . C 3 HOH A 216 616 341 HOH HOH . C 3 HOH A 217 617 173 HOH HOH . C 3 HOH A 218 618 279 HOH HOH . C 3 HOH A 219 619 281 HOH HOH . C 3 HOH A 220 620 381 HOH HOH . C 3 HOH A 221 621 386 HOH HOH . C 3 HOH A 222 622 168 HOH HOH . C 3 HOH A 223 623 283 HOH HOH . C 3 HOH A 224 624 130 HOH HOH . C 3 HOH A 225 625 180 HOH HOH . C 3 HOH A 226 626 428 HOH HOH . C 3 HOH A 227 627 208 HOH HOH . C 3 HOH A 228 628 416 HOH HOH . C 3 HOH A 229 629 197 HOH HOH . C 3 HOH A 230 630 406 HOH HOH . C 3 HOH A 231 631 147 HOH HOH . C 3 HOH A 232 632 45 HOH HOH . C 3 HOH A 233 633 270 HOH HOH . C 3 HOH A 234 634 104 HOH HOH . C 3 HOH A 235 635 309 HOH HOH . C 3 HOH A 236 636 106 HOH HOH . C 3 HOH A 237 637 53 HOH HOH . C 3 HOH A 238 638 389 HOH HOH . C 3 HOH A 239 639 233 HOH HOH . C 3 HOH A 240 640 117 HOH HOH . C 3 HOH A 241 641 166 HOH HOH . C 3 HOH A 242 642 236 HOH HOH . C 3 HOH A 243 643 212 HOH HOH . C 3 HOH A 244 644 387 HOH HOH . C 3 HOH A 245 645 230 HOH HOH . C 3 HOH A 246 646 211 HOH HOH . C 3 HOH A 247 647 404 HOH HOH . C 3 HOH A 248 648 245 HOH HOH . C 3 HOH A 249 649 434 HOH HOH . C 3 HOH A 250 650 391 HOH HOH . C 3 HOH A 251 651 160 HOH HOH . C 3 HOH A 252 652 76 HOH HOH . C 3 HOH A 253 653 153 HOH HOH . C 3 HOH A 254 654 101 HOH HOH . C 3 HOH A 255 655 152 HOH HOH . C 3 HOH A 256 656 432 HOH HOH . C 3 HOH A 257 657 388 HOH HOH . C 3 HOH A 258 658 226 HOH HOH . C 3 HOH A 259 659 161 HOH HOH . C 3 HOH A 260 660 274 HOH HOH . C 3 HOH A 261 661 427 HOH HOH . C 3 HOH A 262 662 395 HOH HOH . C 3 HOH A 263 663 385 HOH HOH . C 3 HOH A 264 664 221 HOH HOH . C 3 HOH A 265 665 398 HOH HOH . C 3 HOH A 266 666 299 HOH HOH . C 3 HOH A 267 667 396 HOH HOH . C 3 HOH A 268 668 142 HOH HOH . C 3 HOH A 269 669 392 HOH HOH . C 3 HOH A 270 670 156 HOH HOH . C 3 HOH A 271 671 265 HOH HOH . C 3 HOH A 272 672 135 HOH HOH . C 3 HOH A 273 673 293 HOH HOH . C 3 HOH A 274 674 206 HOH HOH . C 3 HOH A 275 675 307 HOH HOH . C 3 HOH A 276 676 390 HOH HOH . C 3 HOH A 277 677 232 HOH HOH . C 3 HOH A 278 678 210 HOH HOH . C 3 HOH A 279 679 405 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DQY . . . B 2 7.48 3.198 10.447 1 20.7 ? S DQY 301 A 1 HETATM 2 C C1 DQY . . . B 2 9.918 3.449 12.76 1 25.83 ? C1 DQY 301 A 1 HETATM 3 O O1 DQY . . . B 2 9.023 2.606 12.907 1 21.32 ? O1 DQY 301 A 1 HETATM 4 C C2 DQY . . . B 2 9.824 4.368 11.535 1 25.47 ? C2 DQY 301 A 1 HETATM 5 O O2 DQY . . . B 2 10.853 3.632 13.53 1 22.09 ? O2 DQY 301 A 1 HETATM 6 C C3 DQY . . . B 2 9.239 3.597 10.3 1 22.46 ? C3 DQY 301 A 1 HETATM 7 C CM1 DQY . . . B 2 6.936 4.344 11.642 1 23.88 ? CM1 DQY 301 A 1 HETATM 8 C CM2 DQY . . . B 2 7.157 3.899 8.83 1 18.81 ? CM2 DQY 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #