data_6EYI # _model_server_result.job_id Ww5Pi_zFJXQLSCekZauRMw _model_server_result.datetime_utc '2024-12-27 16:09:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eyi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 6EYI # _exptl.entry_id 6EYI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.16 _cell.angle_gamma 90 _cell.entry_id 6EYI _cell.length_a 93.59 _cell.length_b 72.94 _cell.length_c 52.52 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EYI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 19 A CYS 19 1_555 A SG CYS 117 A CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 90 A CYS 90 1_555 A SG CYS 109 A CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 A SG CYS 122 A CYS 122 1_555 A SG CYS 133 A CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 A SG CYS 127 A CYS 127 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 A SG CYS 144 A CYS 144 1_555 A SG CYS 153 A CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf6 A SG CYS 159 A CYS 159 1_555 A SG CYS 203 A CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 A SG CYS 172 A CYS 172 1_555 A SG CYS 185 A CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf8 A SG CYS 189 A CYS 189 1_555 A SG CYS 216 A CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf9 A SG CYS 221 A CYS 221 1_555 A SG CYS 265 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 A SG CYS 234 A CYS 234 1_555 A SG CYS 247 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf11 A SG CYS 251 A CYS 251 1_555 A SG CYS 278 A CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 4 A ASN 4 1_555 F C1 NAG . A NAG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 A ND2 ASN 124 A ASN 124 1_555 G C1 NAG . A NAG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale3 A ND2 ASN 139 A ASN 139 1_555 C C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 A ND2 ASN 158 A ASN 158 1_555 D C1 NAG . A NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale5 A ND2 ASN 178 A ASN 178 1_555 E C1 NAG . A NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale6 A ND2 ASN 182 A ASN 182 1_555 B C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale7 A ND2 ASN 244 A ASN 244 1_555 H C1 NAG . A NAG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? metalc ? metalc1 A OE2 GLU 80 A GLU 80 1_555 J CA CA . A CA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.873 ? metalc ? metalc2 A OD1 ASN 82 A ASN 82 1_555 J CA CA . A CA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc3 A OE1 GLU 88 A GLU 88 1_555 J CA CA . A CA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc4 A OD2 ASP 89 A ASP 89 1_555 K CA CA . A CA 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.991 ? metalc ? metalc5 A OD1 ASN 105 A ASN 105 1_555 J CA CA . A CA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc6 A O ASP 106 A ASP 106 1_555 J CA CA . A CA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc7 A OD1 ASP 106 A ASP 106 1_555 J CA CA . A CA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc8 A O GLY 168 A GLY 168 1_555 L CA CA . A CA 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc9 I OBG C4Z . A C4Z 308 1_555 J CA CA . A CA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc10 I OBF C4Z . A C4Z 308 1_555 J CA CA . A CA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc11 L CA CA . A CA 311 1_555 M O HOH . A HOH 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.02 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 326 n n C1 O1 NAG sing 327 n n C1 O5 NAG sing 328 n n C1 H1 NAG sing 329 n n C2 C3 NAG sing 330 n n C2 N2 NAG sing 331 n n C2 H2 NAG sing 332 n n C3 C4 NAG sing 333 n n C3 O3 NAG sing 334 n n C3 H3 NAG sing 335 n n C4 C5 NAG sing 336 n n C4 O4 NAG sing 337 n n C4 H4 NAG sing 338 n n C5 C6 NAG sing 339 n n C5 O5 NAG sing 340 n n C5 H5 NAG sing 341 n n C6 O6 NAG sing 342 n n C6 H61 NAG sing 343 n n C6 H62 NAG sing 344 n n C7 C8 NAG sing 345 n n C7 N2 NAG sing 346 n n C7 O7 NAG doub 347 n n C8 H81 NAG sing 348 n n C8 H82 NAG sing 349 n n C8 H83 NAG sing 350 n n N2 HN2 NAG sing 351 n n O1 HO1 NAG sing 352 n n O3 HO3 NAG sing 353 n n O4 HO4 NAG sing 354 n n O6 HO6 NAG sing 355 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6EYI _atom_sites.fract_transf_matrix[1][1] 0.010685 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000777 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01371 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019091 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 301 281 NAG NAG . C 2 NAG A 1 302 282 NAG NAG . D 2 NAG A 1 303 283 NAG NAG . E 2 NAG A 1 304 284 NAG NAG . F 2 NAG A 1 305 285 NAG NAG . G 2 NAG A 1 306 286 NAG NAG . H 2 NAG A 1 307 287 NAG NAG . I 3 C4Z A 1 308 301 C4Z DRG . J 4 CA A 1 309 302 CA CA . K 4 CA A 1 310 303 CA CA . L 4 CA A 1 311 304 CA CA . M 5 HOH A 1 401 104 HOH HOH . M 5 HOH A 2 402 109 HOH HOH . M 5 HOH A 3 403 3 HOH HOH . M 5 HOH A 4 404 10 HOH HOH . M 5 HOH A 5 405 95 HOH HOH . M 5 HOH A 6 406 5 HOH HOH . M 5 HOH A 7 407 93 HOH HOH . M 5 HOH A 8 408 123 HOH HOH . M 5 HOH A 9 409 117 HOH HOH . M 5 HOH A 10 410 83 HOH HOH . M 5 HOH A 11 411 127 HOH HOH . M 5 HOH A 12 412 114 HOH HOH . M 5 HOH A 13 413 13 HOH HOH . M 5 HOH A 14 414 53 HOH HOH . M 5 HOH A 15 415 122 HOH HOH . M 5 HOH A 16 416 20 HOH HOH . M 5 HOH A 17 417 94 HOH HOH . M 5 HOH A 18 418 98 HOH HOH . M 5 HOH A 19 419 129 HOH HOH . M 5 HOH A 20 420 121 HOH HOH . M 5 HOH A 21 421 23 HOH HOH . M 5 HOH A 22 422 48 HOH HOH . M 5 HOH A 23 423 65 HOH HOH . M 5 HOH A 24 424 6 HOH HOH . M 5 HOH A 25 425 9 HOH HOH . M 5 HOH A 26 426 80 HOH HOH . M 5 HOH A 27 427 31 HOH HOH . M 5 HOH A 28 428 27 HOH HOH . M 5 HOH A 29 429 92 HOH HOH . M 5 HOH A 30 430 50 HOH HOH . M 5 HOH A 31 431 110 HOH HOH . M 5 HOH A 32 432 88 HOH HOH . M 5 HOH A 33 433 130 HOH HOH . M 5 HOH A 34 434 26 HOH HOH . M 5 HOH A 35 435 96 HOH HOH . M 5 HOH A 36 436 17 HOH HOH . M 5 HOH A 37 437 125 HOH HOH . M 5 HOH A 38 438 11 HOH HOH . M 5 HOH A 39 439 30 HOH HOH . M 5 HOH A 40 440 84 HOH HOH . M 5 HOH A 41 441 106 HOH HOH . M 5 HOH A 42 442 119 HOH HOH . M 5 HOH A 43 443 14 HOH HOH . M 5 HOH A 44 444 44 HOH HOH . M 5 HOH A 45 445 43 HOH HOH . M 5 HOH A 46 446 57 HOH HOH . M 5 HOH A 47 447 113 HOH HOH . M 5 HOH A 48 448 2 HOH HOH . M 5 HOH A 49 449 126 HOH HOH . M 5 HOH A 50 450 47 HOH HOH . M 5 HOH A 51 451 51 HOH HOH . M 5 HOH A 52 452 115 HOH HOH . M 5 HOH A 53 453 108 HOH HOH . M 5 HOH A 54 454 16 HOH HOH . M 5 HOH A 55 455 124 HOH HOH . M 5 HOH A 56 456 111 HOH HOH . M 5 HOH A 57 457 8 HOH HOH . M 5 HOH A 58 458 112 HOH HOH . M 5 HOH A 59 459 58 HOH HOH . M 5 HOH A 60 460 7 HOH HOH . M 5 HOH A 61 461 22 HOH HOH . M 5 HOH A 62 462 18 HOH HOH . M 5 HOH A 63 463 63 HOH HOH . M 5 HOH A 64 464 66 HOH HOH . M 5 HOH A 65 465 99 HOH HOH . M 5 HOH A 66 466 82 HOH HOH . M 5 HOH A 67 467 107 HOH HOH . M 5 HOH A 68 468 46 HOH HOH . M 5 HOH A 69 469 128 HOH HOH . M 5 HOH A 70 470 76 HOH HOH . M 5 HOH A 71 471 4 HOH HOH . M 5 HOH A 72 472 70 HOH HOH . M 5 HOH A 73 473 87 HOH HOH . M 5 HOH A 74 474 79 HOH HOH . M 5 HOH A 75 475 60 HOH HOH . M 5 HOH A 76 476 39 HOH HOH . M 5 HOH A 77 477 12 HOH HOH . M 5 HOH A 78 478 116 HOH HOH . M 5 HOH A 79 479 35 HOH HOH . M 5 HOH A 80 480 118 HOH HOH . M 5 HOH A 81 481 102 HOH HOH . M 5 HOH A 82 482 42 HOH HOH . M 5 HOH A 83 483 21 HOH HOH . M 5 HOH A 84 484 72 HOH HOH . M 5 HOH A 85 485 86 HOH HOH . M 5 HOH A 86 486 34 HOH HOH . M 5 HOH A 87 487 75 HOH HOH . M 5 HOH A 88 488 24 HOH HOH . M 5 HOH A 89 489 78 HOH HOH . M 5 HOH A 90 490 67 HOH HOH . M 5 HOH A 91 491 69 HOH HOH . M 5 HOH A 92 492 25 HOH HOH . M 5 HOH A 93 493 73 HOH HOH . M 5 HOH A 94 494 59 HOH HOH . M 5 HOH A 95 495 52 HOH HOH . M 5 HOH A 96 496 49 HOH HOH . M 5 HOH A 97 497 85 HOH HOH . M 5 HOH A 98 498 1 HOH HOH . M 5 HOH A 99 499 37 HOH HOH . M 5 HOH A 100 500 15 HOH HOH . M 5 HOH A 101 501 68 HOH HOH . M 5 HOH A 102 502 71 HOH HOH . M 5 HOH A 103 503 91 HOH HOH . M 5 HOH A 104 504 38 HOH HOH . M 5 HOH A 105 505 103 HOH HOH . M 5 HOH A 106 506 54 HOH HOH . M 5 HOH A 107 507 81 HOH HOH . M 5 HOH A 108 508 45 HOH HOH . M 5 HOH A 109 509 40 HOH HOH . M 5 HOH A 110 510 105 HOH HOH . M 5 HOH A 111 511 32 HOH HOH . M 5 HOH A 112 512 33 HOH HOH . M 5 HOH A 113 513 61 HOH HOH . M 5 HOH A 114 514 77 HOH HOH . M 5 HOH A 115 515 100 HOH HOH . M 5 HOH A 116 516 28 HOH HOH . M 5 HOH A 117 517 19 HOH HOH . M 5 HOH A 118 518 120 HOH HOH . M 5 HOH A 119 519 89 HOH HOH . M 5 HOH A 120 520 97 HOH HOH . M 5 HOH A 121 521 41 HOH HOH . M 5 HOH A 122 522 29 HOH HOH . M 5 HOH A 123 523 101 HOH HOH . M 5 HOH A 124 524 55 HOH HOH . M 5 HOH A 125 525 64 HOH HOH . M 5 HOH A 126 526 56 HOH HOH . M 5 HOH A 127 527 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 2 -4.907 10.988 -1.108 1 69.45 ? C1 NAG 304 A 1 HETATM 2 C C2 NAG . . . E 2 -5 10.633 0.375 1 67.41 ? C2 NAG 304 A 1 HETATM 3 C C3 NAG . . . E 2 -4.751 11.844 1.279 1 71.04 ? C3 NAG 304 A 1 HETATM 4 C C4 NAG . . . E 2 -3.436 12.517 0.908 1 76.74 ? C4 NAG 304 A 1 HETATM 5 C C5 NAG . . . E 2 -3.475 12.916 -0.566 1 76.55 ? C5 NAG 304 A 1 HETATM 6 C C6 NAG . . . E 2 -2.184 13.529 -1.07 1 78.26 ? C6 NAG 304 A 1 HETATM 7 C C7 NAG . . . E 2 -6.508 8.818 1.039 1 59.1 ? C7 NAG 304 A 1 HETATM 8 C C8 NAG . . . E 2 -7.932 8.42 1.286 1 56.36 ? C8 NAG 304 A 1 HETATM 9 N N2 NAG . . . E 2 -6.316 10.07 0.621 1 61.18 ? N2 NAG 304 A 1 HETATM 10 O O3 NAG . . . E 2 -4.693 11.416 2.636 1 70.04 ? O3 NAG 304 A 1 HETATM 11 O O4 NAG . . . E 2 -3.189 13.629 1.762 1 80.5 ? O4 NAG 304 A 1 HETATM 12 O O5 NAG . . . E 2 -3.717 11.747 -1.374 1 73.02 ? O5 NAG 304 A 1 HETATM 13 O O6 NAG . . . E 2 -1.057 12.69 -0.851 1 79.11 ? O6 NAG 304 A 1 HETATM 14 O O7 NAG . . . E 2 -5.576 8.045 1.233 1 60.74 ? O7 NAG 304 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 14 #