data_6EYU
#
_model_server_result.job_id            mRC51cJIQsPMc1rczBMjcw 
_model_server_result.datetime_utc      '2024-10-11 07:23:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6eyu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"HA","auth_seq_id":301}' 
#
_entry.id    6EYU 
#
_exptl.entry_id    6EYU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6EYU 
_cell.length_a            64.01 
_cell.length_b            93.87 
_cell.length_c            196.21 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6EYU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 X N N 
? 2 HA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 213 A LYS 213 1_555 D C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale2 B NZ LYS 213 B LYS 213 1_555 X C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale3 C NZ LYS 213 C LYS 213 1_555 HA C15 RET . C RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 381 n n 
C1 C6 RET sing 382 n n 
C1 C16 RET sing 383 n n 
C1 C17 RET sing 384 n n 
C2 C3 RET sing 385 n n 
C2 H21 RET sing 386 n n 
C2 H22 RET sing 387 n n 
C3 C4 RET sing 388 n n 
C3 H31 RET sing 389 n n 
C3 H32 RET sing 390 n n 
C4 C5 RET sing 391 n n 
C4 H41 RET sing 392 n n 
C4 H42 RET sing 393 n n 
C5 C6 RET doub 394 n n 
C5 C18 RET sing 395 n n 
C6 C7 RET sing 396 n n 
C7 C8 RET doub 397 e n 
C7 H7 RET sing 398 n n 
C8 C9 RET sing 399 n n 
C8 H8 RET sing 400 n n 
C9 C10 RET doub 401 e n 
C9 C19 RET sing 402 n n 
C10 C11 RET sing 403 n n 
C10 H10 RET sing 404 n n 
C11 C12 RET doub 405 e n 
C11 H11 RET sing 406 n n 
C12 C13 RET sing 407 n n 
C12 H12 RET sing 408 n n 
C13 C14 RET doub 409 e n 
C13 C20 RET sing 410 n n 
C14 C15 RET sing 411 n n 
C14 H14 RET sing 412 n n 
C15 O1 RET doub 413 n n 
C15 H15 RET sing 414 n n 
C16 H161 RET sing 415 n n 
C16 H162 RET sing 416 n n 
C16 H163 RET sing 417 n n 
C17 H171 RET sing 418 n n 
C17 H172 RET sing 419 n n 
C17 H173 RET sing 420 n n 
C18 H181 RET sing 421 n n 
C18 H182 RET sing 422 n n 
C18 H183 RET sing 423 n n 
C19 H191 RET sing 424 n n 
C19 H192 RET sing 425 n n 
C19 H193 RET sing 426 n n 
C20 H201 RET sing 427 n n 
C20 H202 RET sing 428 n n 
C20 H203 RET sing 429 n n 
#
_atom_sites.entry_id                     6EYU 
_atom_sites.fract_transf_matrix[1][1]    0.015623 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010653 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005097 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 RET A 1 301 1213 RET LRN . 
E 3 LFA A 1 302 19 LFA LFA . 
F 3 LFA A 1 303 21 LFA LFA . 
G 3 LFA A 1 304 22 LFA LFA . 
H 3 LFA A 1 305 24 LFA LFA . 
I 3 LFA A 1 306 29 LFA LFA . 
J 3 LFA A 1 307 30 LFA LFA . 
K 4 MUN A 1 308 2 MUN MUN . 
L 4 MUN A 1 309 3 MUN MUN . 
M 4 MUN A 1 310 5 MUN MUN . 
N 4 MUN A 1 311 9 MUN MUN . 
O 4 MUN A 1 312 14 MUN MUN . 
P 4 MUN A 1 313 19 MUN MUN . 
Q 4 MUN A 1 314 20 MUN MUN . 
R 4 MUN A 1 315 21 MUN MUN . 
S 4 MUN A 1 316 22 MUN MUN . 
T 4 MUN A 1 317 23 MUN MUN . 
U 4 MUN A 1 318 24 MUN MUN . 
V 4 MUN A 1 319 25 MUN MUN . 
W 4 MUN A 1 320 26 MUN MUN . 
X 2 RET B 1 301 1213 RET LRN . 
Y 3 LFA B 1 302 15 LFA LFA . 
Z 4 MUN B 1 303 1 MUN MUN . 
AA 4 MUN B 1 304 4 MUN MUN . 
BA 4 MUN B 1 305 6 MUN MUN . 
CA 4 MUN B 1 306 7 MUN MUN . 
DA 4 MUN B 1 307 10 MUN MUN . 
EA 4 MUN B 1 308 11 MUN MUN . 
FA 4 MUN B 1 309 16 MUN MUN . 
GA 4 MUN B 1 310 18 MUN MUN . 
HA 2 RET C 1 301 1213 RET LRN . 
IA 3 LFA C 1 302 18 LFA LFA . 
JA 3 LFA C 1 303 20 LFA LFA . 
KA 3 LFA C 1 304 23 LFA LFA . 
LA 3 LFA C 1 305 26 LFA LFA . 
MA 3 LFA C 1 306 31 LFA LFA . 
NA 4 MUN C 1 307 8 MUN MUN . 
OA 4 MUN C 1 308 12 MUN MUN . 
PA 4 MUN C 1 309 13 MUN MUN . 
QA 4 MUN C 1 310 15 MUN MUN . 
RA 4 MUN C 1 311 17 MUN MUN . 
SA 5 HOH A 1 401 1015 HOH HOH . 
SA 5 HOH A 2 402 1005 HOH HOH . 
SA 5 HOH A 3 403 1017 HOH HOH . 
SA 5 HOH A 4 404 1007 HOH HOH . 
SA 5 HOH A 5 405 1018 HOH HOH . 
SA 5 HOH A 6 406 1008 HOH HOH . 
SA 5 HOH A 7 407 1002 HOH HOH . 
SA 5 HOH A 8 408 1020 HOH HOH . 
SA 5 HOH A 9 409 1014 HOH HOH . 
SA 5 HOH A 10 410 1011 HOH HOH . 
SA 5 HOH A 11 411 1022 HOH HOH . 
SA 5 HOH A 12 412 1006 HOH HOH . 
SA 5 HOH A 13 413 1001 HOH HOH . 
SA 5 HOH A 14 414 1016 HOH HOH . 
SA 5 HOH A 15 415 1021 HOH HOH . 
SA 5 HOH A 16 416 1009 HOH HOH . 
SA 5 HOH A 17 417 1003 HOH HOH . 
SA 5 HOH A 18 418 1019 HOH HOH . 
SA 5 HOH A 19 419 1023 HOH HOH . 
SA 5 HOH A 20 420 1010 HOH HOH . 
SA 5 HOH A 21 421 1004 HOH HOH . 
SA 5 HOH A 22 422 1012 HOH HOH . 
SA 5 HOH A 23 423 1013 HOH HOH . 
TA 5 HOH B 1 401 1005 HOH HOH . 
TA 5 HOH B 2 402 1012 HOH HOH . 
TA 5 HOH B 3 403 1011 HOH HOH . 
TA 5 HOH B 4 404 1002 HOH HOH . 
TA 5 HOH B 5 405 1007 HOH HOH . 
TA 5 HOH B 6 406 1013 HOH HOH . 
TA 5 HOH B 7 407 1014 HOH HOH . 
TA 5 HOH B 8 408 1008 HOH HOH . 
TA 5 HOH B 9 409 1024 HOH HOH . 
TA 5 HOH B 10 410 1003 HOH HOH . 
TA 5 HOH B 11 411 1010 HOH HOH . 
TA 5 HOH B 12 412 1006 HOH HOH . 
TA 5 HOH B 13 413 1004 HOH HOH . 
TA 5 HOH B 14 414 1009 HOH HOH . 
TA 5 HOH B 15 415 1001 HOH HOH . 
TA 5 HOH B 16 416 1025 HOH HOH . 
UA 5 HOH C 1 401 1015 HOH HOH . 
UA 5 HOH C 2 402 1005 HOH HOH . 
UA 5 HOH C 3 403 1017 HOH HOH . 
UA 5 HOH C 4 404 1007 HOH HOH . 
UA 5 HOH C 5 405 1026 HOH HOH . 
UA 5 HOH C 6 406 1002 HOH HOH . 
UA 5 HOH C 7 407 1001 HOH HOH . 
UA 5 HOH C 8 408 1008 HOH HOH . 
UA 5 HOH C 9 409 1003 HOH HOH . 
UA 5 HOH C 10 410 1016 HOH HOH . 
UA 5 HOH C 11 411 1004 HOH HOH . 
UA 5 HOH C 12 412 1006 HOH HOH . 
UA 5 HOH C 13 413 1014 HOH HOH . 
UA 5 HOH C 14 414 1018 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . HA 2 1.773 1.579 32.4 1 61.39 ? C1 RET 301 C 1 
HETATM 2 C C2 RET . . . HA 2 2.575 1.03 33.587 1 58.98 ? C2 RET 301 C 1 
HETATM 3 C C3 RET . . . HA 2 3.283 -0.28 33.248 1 59.41 ? C3 RET 301 C 1 
HETATM 4 C C4 RET . . . HA 2 4.34 -0.036 32.178 1 62.64 ? C4 RET 301 C 1 
HETATM 5 C C5 RET . . . HA 2 3.729 0.754 31.023 1 60.95 ? C5 RET 301 C 1 
HETATM 6 C C6 RET . . . HA 2 2.516 1.37 31.072 1 60.63 ? C6 RET 301 C 1 
HETATM 7 C C7 RET . . . HA 2 2.013 2.02 29.877 1 57.99 ? C7 RET 301 C 1 
HETATM 8 C C8 RET . . . HA 2 0.837 2.704 29.909 1 52.97 ? C8 RET 301 C 1 
HETATM 9 C C9 RET . . . HA 2 0.314 3.285 28.699 1 53.19 ? C9 RET 301 C 1 
HETATM 10 C C10 RET . . . HA 2 -0.892 3.977 28.714 1 58.38 ? C10 RET 301 C 1 
HETATM 11 C C11 RET . . . HA 2 -1.479 4.636 27.614 1 63.25 ? C11 RET 301 C 1 
HETATM 12 C C12 RET . . . HA 2 -2.709 5.166 27.986 1 63.44 ? C12 RET 301 C 1 
HETATM 13 C C13 RET . . . HA 2 -3.584 5.904 27.161 1 59.09 ? C13 RET 301 C 1 
HETATM 14 C C14 RET . . . HA 2 -4.813 6.344 27.669 1 65.5 ? C14 RET 301 C 1 
HETATM 15 C C15 RET . . . HA 2 -5.816 6.997 26.959 1 70.6 ? C15 RET 301 C 1 
HETATM 16 C C16 RET . . . HA 2 0.419 0.871 32.311 1 62.91 ? C16 RET 301 C 1 
HETATM 17 C C17 RET . . . HA 2 1.563 3.083 32.576 1 62.13 ? C17 RET 301 C 1 
HETATM 18 C C18 RET . . . HA 2 4.468 0.738 29.684 1 59.88 ? C18 RET 301 C 1 
HETATM 19 C C19 RET . . . HA 2 1.114 3.181 27.399 1 53.06 ? C19 RET 301 C 1 
HETATM 20 C C20 RET . . . HA 2 -3.16 6.28 25.739 1 56.52 ? C20 RET 301 C 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           20 
#