data_6EYU # _model_server_result.job_id 6rddu4Ti3U3rtRDG578_Wg _model_server_result.datetime_utc '2024-10-11 07:20:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eyu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":311}' # _entry.id 6EYU # _exptl.entry_id 6EYU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 258.354 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{S})-2,3-bis(oxidanyl)propyl] (~{E})-undec-2-enoate' _entity.pdbx_number_of_molecules 26 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EYU _cell.length_a 64.01 _cell.length_b 93.87 _cell.length_c 196.21 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EYU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 U N N ? 4 V N N ? 4 W N N ? 4 Z N N ? 4 AA N N ? 4 BA N N ? 4 CA N N ? 4 DA N N ? 4 EA N N ? 4 FA N N ? 4 GA N N ? 4 NA N N ? 4 OA N N ? 4 PA N N ? 4 QA N N ? 4 RA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 213 A LYS 213 1_555 D C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale2 B NZ LYS 213 B LYS 213 1_555 X C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale3 C NZ LYS 213 C LYS 213 1_555 HA C15 RET . C RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? # _chem_comp.formula 'C14 H26 O4' _chem_comp.formula_weight 258.354 _chem_comp.id MUN _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{S})-2,3-bis(oxidanyl)propyl] (~{E})-undec-2-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MONOUNDECENOIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAL CAI MUN sing 298 n n CAI CAG MUN sing 299 n n OAJ CAG MUN sing 300 n n CAG CAE MUN sing 301 n n CAE OAB MUN sing 302 n n OAB CAA MUN sing 303 n n OAD CAA MUN doub 304 n n CAA CAC MUN sing 305 n n CAC CAF MUN doub 306 e n CAF CAH MUN sing 307 n n CAH CAK MUN sing 308 n n CAK CAM MUN sing 309 n n CAM CAN MUN sing 310 n n CAN CAO MUN sing 311 n n CAO CAP MUN sing 312 n n CAP CAQ MUN sing 313 n n CAR CAQ MUN sing 314 n n CAR H1 MUN sing 315 n n CAR H2 MUN sing 316 n n CAR H3 MUN sing 317 n n CAQ H4 MUN sing 318 n n CAQ H5 MUN sing 319 n n CAP H6 MUN sing 320 n n CAP H7 MUN sing 321 n n CAO H8 MUN sing 322 n n CAO H9 MUN sing 323 n n CAN H10 MUN sing 324 n n CAN H11 MUN sing 325 n n CAM H12 MUN sing 326 n n CAM H13 MUN sing 327 n n CAK H14 MUN sing 328 n n CAK H15 MUN sing 329 n n CAH H16 MUN sing 330 n n CAH H17 MUN sing 331 n n CAF H18 MUN sing 332 n n CAC H20 MUN sing 333 n n CAE H22 MUN sing 334 n n CAE H23 MUN sing 335 n n CAG H24 MUN sing 336 n n OAJ H25 MUN sing 337 n n CAI H26 MUN sing 338 n n CAI H27 MUN sing 339 n n OAL H28 MUN sing 340 n n # _atom_sites.entry_id 6EYU _atom_sites.fract_transf_matrix[1][1] 0.015623 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010653 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005097 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 RET A 1 301 1213 RET LRN . E 3 LFA A 1 302 19 LFA LFA . F 3 LFA A 1 303 21 LFA LFA . G 3 LFA A 1 304 22 LFA LFA . H 3 LFA A 1 305 24 LFA LFA . I 3 LFA A 1 306 29 LFA LFA . J 3 LFA A 1 307 30 LFA LFA . K 4 MUN A 1 308 2 MUN MUN . L 4 MUN A 1 309 3 MUN MUN . M 4 MUN A 1 310 5 MUN MUN . N 4 MUN A 1 311 9 MUN MUN . O 4 MUN A 1 312 14 MUN MUN . P 4 MUN A 1 313 19 MUN MUN . Q 4 MUN A 1 314 20 MUN MUN . R 4 MUN A 1 315 21 MUN MUN . S 4 MUN A 1 316 22 MUN MUN . T 4 MUN A 1 317 23 MUN MUN . U 4 MUN A 1 318 24 MUN MUN . V 4 MUN A 1 319 25 MUN MUN . W 4 MUN A 1 320 26 MUN MUN . X 2 RET B 1 301 1213 RET LRN . Y 3 LFA B 1 302 15 LFA LFA . Z 4 MUN B 1 303 1 MUN MUN . AA 4 MUN B 1 304 4 MUN MUN . BA 4 MUN B 1 305 6 MUN MUN . CA 4 MUN B 1 306 7 MUN MUN . DA 4 MUN B 1 307 10 MUN MUN . EA 4 MUN B 1 308 11 MUN MUN . FA 4 MUN B 1 309 16 MUN MUN . GA 4 MUN B 1 310 18 MUN MUN . HA 2 RET C 1 301 1213 RET LRN . IA 3 LFA C 1 302 18 LFA LFA . JA 3 LFA C 1 303 20 LFA LFA . KA 3 LFA C 1 304 23 LFA LFA . LA 3 LFA C 1 305 26 LFA LFA . MA 3 LFA C 1 306 31 LFA LFA . NA 4 MUN C 1 307 8 MUN MUN . OA 4 MUN C 1 308 12 MUN MUN . PA 4 MUN C 1 309 13 MUN MUN . QA 4 MUN C 1 310 15 MUN MUN . RA 4 MUN C 1 311 17 MUN MUN . SA 5 HOH A 1 401 1015 HOH HOH . SA 5 HOH A 2 402 1005 HOH HOH . SA 5 HOH A 3 403 1017 HOH HOH . SA 5 HOH A 4 404 1007 HOH HOH . SA 5 HOH A 5 405 1018 HOH HOH . SA 5 HOH A 6 406 1008 HOH HOH . SA 5 HOH A 7 407 1002 HOH HOH . SA 5 HOH A 8 408 1020 HOH HOH . SA 5 HOH A 9 409 1014 HOH HOH . SA 5 HOH A 10 410 1011 HOH HOH . SA 5 HOH A 11 411 1022 HOH HOH . SA 5 HOH A 12 412 1006 HOH HOH . SA 5 HOH A 13 413 1001 HOH HOH . SA 5 HOH A 14 414 1016 HOH HOH . SA 5 HOH A 15 415 1021 HOH HOH . SA 5 HOH A 16 416 1009 HOH HOH . SA 5 HOH A 17 417 1003 HOH HOH . SA 5 HOH A 18 418 1019 HOH HOH . SA 5 HOH A 19 419 1023 HOH HOH . SA 5 HOH A 20 420 1010 HOH HOH . SA 5 HOH A 21 421 1004 HOH HOH . SA 5 HOH A 22 422 1012 HOH HOH . SA 5 HOH A 23 423 1013 HOH HOH . TA 5 HOH B 1 401 1005 HOH HOH . TA 5 HOH B 2 402 1012 HOH HOH . TA 5 HOH B 3 403 1011 HOH HOH . TA 5 HOH B 4 404 1002 HOH HOH . TA 5 HOH B 5 405 1007 HOH HOH . TA 5 HOH B 6 406 1013 HOH HOH . TA 5 HOH B 7 407 1014 HOH HOH . TA 5 HOH B 8 408 1008 HOH HOH . TA 5 HOH B 9 409 1024 HOH HOH . TA 5 HOH B 10 410 1003 HOH HOH . TA 5 HOH B 11 411 1010 HOH HOH . TA 5 HOH B 12 412 1006 HOH HOH . TA 5 HOH B 13 413 1004 HOH HOH . TA 5 HOH B 14 414 1009 HOH HOH . TA 5 HOH B 15 415 1001 HOH HOH . TA 5 HOH B 16 416 1025 HOH HOH . UA 5 HOH C 1 401 1015 HOH HOH . UA 5 HOH C 2 402 1005 HOH HOH . UA 5 HOH C 3 403 1017 HOH HOH . UA 5 HOH C 4 404 1007 HOH HOH . UA 5 HOH C 5 405 1026 HOH HOH . UA 5 HOH C 6 406 1002 HOH HOH . UA 5 HOH C 7 407 1001 HOH HOH . UA 5 HOH C 8 408 1008 HOH HOH . UA 5 HOH C 9 409 1003 HOH HOH . UA 5 HOH C 10 410 1016 HOH HOH . UA 5 HOH C 11 411 1004 HOH HOH . UA 5 HOH C 12 412 1006 HOH HOH . UA 5 HOH C 13 413 1014 HOH HOH . UA 5 HOH C 14 414 1018 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAR MUN . . . N 4 -16.855 -18.549 26.777 1 71.42 ? CAR MUN 311 A 1 HETATM 2 C CAQ MUN . . . N 4 -16.729 -17.778 25.464 1 58.32 ? CAQ MUN 311 A 1 HETATM 3 C CAP MUN . . . N 4 -16.842 -18.762 24.301 1 52.25 ? CAP MUN 311 A 1 HETATM 4 C CAO MUN . . . N 4 -16.928 -17.995 22.985 1 54.75 ? CAO MUN 311 A 1 HETATM 5 C CAN MUN . . . N 4 -16.678 -18.972 21.839 1 60.07 ? CAN MUN 311 A 1 HETATM 6 C CAM MUN . . . N 4 -17.692 -18.718 20.728 1 59.81 ? CAM MUN 311 A 1 HETATM 7 C CAK MUN . . . N 4 -16.947 -18.625 19.399 1 60.57 ? CAK MUN 311 A 1 HETATM 8 C CAH MUN . . . N 4 -17.679 -19.459 18.35 1 63.66 ? CAH MUN 311 A 1 HETATM 9 C CAF MUN . . . N 4 -18.063 -18.555 17.18 1 65.16 ? CAF MUN 311 A 1 HETATM 10 C CAC MUN . . . N 4 -17.684 -19.086 15.793 1 56.56 ? CAC MUN 311 A 1 HETATM 11 C CAA MUN . . . N 4 -17.334 -18.021 14.747 1 66.25 ? CAA MUN 311 A 1 HETATM 12 O OAD MUN . . . N 4 -17.582 -16.834 14.954 1 98.73 ? OAD MUN 311 A 1 HETATM 13 O OAB MUN . . . N 4 -17.007 -18.514 13.52 1 66.83 ? OAB MUN 311 A 1 HETATM 14 C CAE MUN . . . N 4 -17.023 -17.437 12.58 1 73.67 ? CAE MUN 311 A 1 HETATM 15 C CAG MUN . . . N 4 -16.638 -17.954 11.193 1 80.65 ? CAG MUN 311 A 1 HETATM 16 O OAJ MUN . . . N 4 -16.865 -19.365 11.129 1 82.24 ? OAJ MUN 311 A 1 HETATM 17 C CAI MUN . . . N 4 -17.492 -17.25 10.137 1 87.22 ? CAI MUN 311 A 1 HETATM 18 O OAL MUN . . . N 4 -17.36 -17.931 8.886 1 85.63 ? OAL MUN 311 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 18 #