data_6EZ2 # _model_server_result.job_id coc59DGNnmaXPWkawZRYCQ _model_server_result.datetime_utc '2024-11-22 15:25:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ez2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":609}' # _entry.id 6EZ2 # _exptl.entry_id 6EZ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EZ2 _cell.length_a 76.01 _cell.length_b 79.94 _cell.length_c 231.49 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EZ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,V 1 1 B,L,M,N,O,P,Q,R,S,T,U,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 S N N ? 6 T N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 607 NAG 2 n C NAG 2 C 2 NAG A 608 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 63 A CYS 65 1_555 A SG CYS 90 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 250 A CYS 252 1_555 A SG CYS 261 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 398 A CYS 400 1_555 A SG CYS 517 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 B SG CYS 63 B CYS 65 1_555 B SG CYS 90 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf5 B SG CYS 250 B CYS 252 1_555 B SG CYS 261 B CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 B SG CYS 398 B CYS 400 1_555 B SG CYS 517 B CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 15 A ASN 17 1_555 D C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 A ND2 ASN 55 A ASN 57 1_555 E C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale3 A ND2 ASN 104 A ASN 106 1_555 F C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale4 A C GLU 195 A GLU 197 1_555 A N BXT 196 A BXT 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 A C BXT 196 A BXT 198 1_555 A N ALA 197 A ALA 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A ND2 ASN 239 A ASN 241 1_555 G C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale7 A ND2 ASN 339 A ASN 341 1_555 H C1 NAG . A NAG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale8 A ND2 ASN 453 A ASN 455 1_555 I C1 NAG . A NAG 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale9 A ND2 ASN 479 A ASN 481 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale10 B ND2 ASN 15 B ASN 17 1_555 L C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale11 B ND2 ASN 55 B ASN 57 1_555 M C1 NAG . B NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale12 B ND2 ASN 104 B ASN 106 1_555 N C1 NAG . B NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale13 B C GLU 195 B GLU 197 1_555 B N BXT 196 B BXT 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale14 B C BXT 196 B BXT 198 1_555 B N ALA 197 B ALA 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale15 B ND2 ASN 239 B ASN 241 1_555 O C1 NAG . B NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale16 B ND2 ASN 254 B ASN 256 1_555 P C1 NAG . B NAG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale17 B ND2 ASN 339 B ASN 341 1_555 Q C1 NAG . B NAG 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale18 B ND2 ASN 479 B ASN 481 1_555 R C1 NAG . B NAG 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale19 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 109 n n C1 C2 EDO sing 110 n n C1 H11 EDO sing 111 n n C1 H12 EDO sing 112 n n O1 HO1 EDO sing 113 n n C2 O2 EDO sing 114 n n C2 H21 EDO sing 115 n n C2 H22 EDO sing 116 n n O2 HO2 EDO sing 117 n n # _atom_sites.entry_id 6EZ2 _atom_sites.fract_transf_matrix[1][1] 0.013156 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012509 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00432 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAG A 1 601 601 NAG NAG . E 3 NAG A 1 602 602 NAG NAG . F 3 NAG A 1 603 603 NAG NAG . G 3 NAG A 1 604 604 NAG NAG . H 3 NAG A 1 605 605 NAG NAG . I 3 NAG A 1 606 606 NAG NAG . J 4 GOL A 1 609 609 GOL GOL . K 5 CL A 1 610 610 CL CL . L 3 NAG B 1 601 601 NAG NAG . M 3 NAG B 1 602 602 NAG NAG . N 3 NAG B 1 603 603 NAG NAG . O 3 NAG B 1 604 604 NAG NAG . P 3 NAG B 1 605 605 NAG NAG . Q 3 NAG B 1 606 606 NAG NAG . R 3 NAG B 1 607 607 NAG NAG . S 6 EDO B 1 608 608 EDO EDO . T 6 EDO B 1 609 609 EDO EDO . U 4 GOL B 1 610 610 GOL GOL . V 7 HOH A 1 701 701 HOH HOH . V 7 HOH A 2 702 702 HOH HOH . V 7 HOH A 3 703 703 HOH HOH . V 7 HOH A 4 704 704 HOH HOH . V 7 HOH A 5 705 705 HOH HOH . V 7 HOH A 6 706 706 HOH HOH . V 7 HOH A 7 707 707 HOH HOH . V 7 HOH A 8 708 709 HOH HOH . V 7 HOH A 9 709 710 HOH HOH . V 7 HOH A 10 710 711 HOH HOH . V 7 HOH A 11 711 712 HOH HOH . V 7 HOH A 12 712 713 HOH HOH . V 7 HOH A 13 713 714 HOH HOH . V 7 HOH A 14 714 715 HOH HOH . V 7 HOH A 15 715 716 HOH HOH . V 7 HOH A 16 716 717 HOH HOH . V 7 HOH A 17 717 718 HOH HOH . V 7 HOH A 18 718 708 HOH HOH . V 7 HOH A 19 719 719 HOH HOH . V 7 HOH A 20 720 720 HOH HOH . V 7 HOH A 21 721 721 HOH HOH . V 7 HOH A 22 722 722 HOH HOH . V 7 HOH A 23 723 723 HOH HOH . V 7 HOH A 24 724 724 HOH HOH . V 7 HOH A 25 725 725 HOH HOH . V 7 HOH A 26 726 726 HOH HOH . V 7 HOH A 27 727 727 HOH HOH . V 7 HOH A 28 728 728 HOH HOH . V 7 HOH A 29 729 729 HOH HOH . V 7 HOH A 30 730 730 HOH HOH . V 7 HOH A 31 731 731 HOH HOH . V 7 HOH A 32 732 732 HOH HOH . V 7 HOH A 33 733 733 HOH HOH . V 7 HOH A 34 734 734 HOH HOH . V 7 HOH A 35 735 735 HOH HOH . V 7 HOH A 36 736 736 HOH HOH . V 7 HOH A 37 737 737 HOH HOH . V 7 HOH A 38 738 738 HOH HOH . V 7 HOH A 39 739 739 HOH HOH . V 7 HOH A 40 740 740 HOH HOH . V 7 HOH A 41 741 741 HOH HOH . V 7 HOH A 42 742 742 HOH HOH . V 7 HOH A 43 743 743 HOH HOH . V 7 HOH A 44 744 744 HOH HOH . V 7 HOH A 45 745 745 HOH HOH . V 7 HOH A 46 746 746 HOH HOH . V 7 HOH A 47 747 747 HOH HOH . V 7 HOH A 48 748 748 HOH HOH . V 7 HOH A 49 749 749 HOH HOH . V 7 HOH A 50 750 750 HOH HOH . V 7 HOH A 51 751 751 HOH HOH . V 7 HOH A 52 752 752 HOH HOH . V 7 HOH A 53 753 753 HOH HOH . V 7 HOH A 54 754 754 HOH HOH . V 7 HOH A 55 755 755 HOH HOH . V 7 HOH A 56 756 756 HOH HOH . V 7 HOH A 57 757 757 HOH HOH . V 7 HOH A 58 758 758 HOH HOH . V 7 HOH A 59 759 759 HOH HOH . W 7 HOH B 1 701 701 HOH HOH . W 7 HOH B 2 702 702 HOH HOH . W 7 HOH B 3 703 703 HOH HOH . W 7 HOH B 4 704 704 HOH HOH . W 7 HOH B 5 705 705 HOH HOH . W 7 HOH B 6 706 706 HOH HOH . W 7 HOH B 7 707 707 HOH HOH . W 7 HOH B 8 708 708 HOH HOH . W 7 HOH B 9 709 709 HOH HOH . W 7 HOH B 10 710 710 HOH HOH . W 7 HOH B 11 711 711 HOH HOH . W 7 HOH B 12 712 712 HOH HOH . W 7 HOH B 13 713 713 HOH HOH . W 7 HOH B 14 714 714 HOH HOH . W 7 HOH B 15 715 715 HOH HOH . W 7 HOH B 16 716 716 HOH HOH . W 7 HOH B 17 717 717 HOH HOH . W 7 HOH B 18 718 718 HOH HOH . W 7 HOH B 19 719 719 HOH HOH . W 7 HOH B 20 720 720 HOH HOH . W 7 HOH B 21 721 721 HOH HOH . W 7 HOH B 22 722 722 HOH HOH . W 7 HOH B 23 723 723 HOH HOH . W 7 HOH B 24 724 724 HOH HOH . W 7 HOH B 25 725 725 HOH HOH . W 7 HOH B 26 726 726 HOH HOH . W 7 HOH B 27 727 727 HOH HOH . W 7 HOH B 28 728 728 HOH HOH . W 7 HOH B 29 729 729 HOH HOH . W 7 HOH B 30 730 730 HOH HOH . W 7 HOH B 31 731 731 HOH HOH . W 7 HOH B 32 732 732 HOH HOH . W 7 HOH B 33 733 733 HOH HOH . W 7 HOH B 34 734 734 HOH HOH . W 7 HOH B 35 735 735 HOH HOH . W 7 HOH B 36 736 736 HOH HOH . W 7 HOH B 37 737 737 HOH HOH . W 7 HOH B 38 738 738 HOH HOH . W 7 HOH B 39 739 739 HOH HOH . W 7 HOH B 40 740 740 HOH HOH . W 7 HOH B 41 741 741 HOH HOH . W 7 HOH B 42 742 742 HOH HOH . W 7 HOH B 43 743 743 HOH HOH . W 7 HOH B 44 744 744 HOH HOH . W 7 HOH B 45 745 746 HOH HOH . W 7 HOH B 46 746 747 HOH HOH . W 7 HOH B 47 747 748 HOH HOH . W 7 HOH B 48 748 749 HOH HOH . W 7 HOH B 49 749 750 HOH HOH . W 7 HOH B 50 750 745 HOH HOH . W 7 HOH B 51 751 751 HOH HOH . W 7 HOH B 52 752 752 HOH HOH . W 7 HOH B 53 753 753 HOH HOH . W 7 HOH B 54 754 754 HOH HOH . W 7 HOH B 55 755 755 HOH HOH . W 7 HOH B 56 756 756 HOH HOH . W 7 HOH B 57 757 757 HOH HOH . W 7 HOH B 58 758 758 HOH HOH . W 7 HOH B 59 759 759 HOH HOH . W 7 HOH B 60 760 760 HOH HOH . W 7 HOH B 61 761 761 HOH HOH . W 7 HOH B 62 762 762 HOH HOH . W 7 HOH B 63 763 763 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . T 6 -13.207 -39.381 35.999 1 89.78 ? C1 EDO 609 B 1 HETATM 2 O O1 EDO . . . T 6 -13.985 -40.582 36.029 1 85.22 ? O1 EDO 609 B 1 HETATM 3 C C2 EDO . . . T 6 -14.108 -38.157 36.106 1 88.11 ? C2 EDO 609 B 1 HETATM 4 O O2 EDO . . . T 6 -14.927 -38.064 34.937 1 95.54 ? O2 EDO 609 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #