data_6EZB # _model_server_result.job_id H2IgzX8Is-cvVxy4gEx57w _model_server_result.datetime_utc '2025-03-06 00:59:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ezb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6EZB # _exptl.entry_id 6EZB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EZB _cell.length_a 72.08 _cell.length_b 84.11 _cell.length_c 144.35 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EZB _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 6EZB _atom_sites.fract_transf_matrix[1][1] 0.013873 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011889 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006928 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 329 FMN FMN . C 3 SO4 A 1 402 330 SO4 SO4 . D 3 SO4 A 1 403 331 SO4 SO4 . E 3 SO4 A 1 404 332 SO4 SO4 . F 4 GOL A 1 405 333 GOL GOL . G 3 SO4 A 1 406 334 SO4 SO4 . H 5 HOH A 1 501 336 HOH HOH . H 5 HOH A 2 502 341 HOH HOH . H 5 HOH A 3 503 361 HOH HOH . H 5 HOH A 4 504 346 HOH HOH . H 5 HOH A 5 505 356 HOH HOH . H 5 HOH A 6 506 339 HOH HOH . H 5 HOH A 7 507 350 HOH HOH . H 5 HOH A 8 508 360 HOH HOH . H 5 HOH A 9 509 369 HOH HOH . H 5 HOH A 10 510 363 HOH HOH . H 5 HOH A 11 511 343 HOH HOH . H 5 HOH A 12 512 335 HOH HOH . H 5 HOH A 13 513 338 HOH HOH . H 5 HOH A 14 514 345 HOH HOH . H 5 HOH A 15 515 368 HOH HOH . H 5 HOH A 16 516 344 HOH HOH . H 5 HOH A 17 517 366 HOH HOH . H 5 HOH A 18 518 351 HOH HOH . H 5 HOH A 19 519 349 HOH HOH . H 5 HOH A 20 520 358 HOH HOH . H 5 HOH A 21 521 364 HOH HOH . H 5 HOH A 22 522 355 HOH HOH . H 5 HOH A 23 523 359 HOH HOH . H 5 HOH A 24 524 372 HOH HOH . H 5 HOH A 25 525 365 HOH HOH . H 5 HOH A 26 526 353 HOH HOH . H 5 HOH A 27 527 354 HOH HOH . H 5 HOH A 28 528 362 HOH HOH . H 5 HOH A 29 529 374 HOH HOH . H 5 HOH A 30 530 367 HOH HOH . H 5 HOH A 31 531 348 HOH HOH . H 5 HOH A 32 532 337 HOH HOH . H 5 HOH A 33 533 347 HOH HOH . H 5 HOH A 34 534 371 HOH HOH . H 5 HOH A 35 535 357 HOH HOH . H 5 HOH A 36 536 340 HOH HOH . H 5 HOH A 37 537 375 HOH HOH . H 5 HOH A 38 538 370 HOH HOH . H 5 HOH A 39 539 373 HOH HOH . H 5 HOH A 40 540 342 HOH HOH . H 5 HOH A 41 541 352 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 -25.725 -26.522 -21.684 1 35.61 ? N1 FMN 401 A 1 HETATM 2 C C2 FMN . . . B 2 -24.855 -27.562 -21.616 1 36.83 ? C2 FMN 401 A 1 HETATM 3 O O2 FMN . . . B 2 -24.665 -28.161 -20.551 1 39.38 ? O2 FMN 401 A 1 HETATM 4 N N3 FMN . . . B 2 -24.141 -27.941 -22.743 1 36.75 ? N3 FMN 401 A 1 HETATM 5 C C4 FMN . . . B 2 -24.239 -27.363 -24 1 36.21 ? C4 FMN 401 A 1 HETATM 6 O O4 FMN . . . B 2 -23.436 -27.672 -24.882 1 35.8 ? O4 FMN 401 A 1 HETATM 7 C C4A FMN . . . B 2 -25.23 -26.277 -24.073 1 35.89 ? C4A FMN 401 A 1 HETATM 8 N N5 FMN . . . B 2 -25.361 -25.632 -25.209 1 34.76 ? N5 FMN 401 A 1 HETATM 9 C C5A FMN . . . B 2 -26.049 -24.425 -25.194 1 33.72 ? C5A FMN 401 A 1 HETATM 10 C C6 FMN . . . B 2 -26.028 -23.632 -26.341 1 32.46 ? C6 FMN 401 A 1 HETATM 11 C C7 FMN . . . B 2 -26.553 -22.344 -26.346 1 35.63 ? C7 FMN 401 A 1 HETATM 12 C C7M FMN . . . B 2 -26.492 -21.532 -27.614 1 34.21 ? C7M FMN 401 A 1 HETATM 13 C C8 FMN . . . B 2 -27.145 -21.834 -25.165 1 39 ? C8 FMN 401 A 1 HETATM 14 C C8M FMN . . . B 2 -27.759 -20.457 -25.118 1 40.27 ? C8M FMN 401 A 1 HETATM 15 C C9 FMN . . . B 2 -27.192 -22.634 -24.027 1 38.56 ? C9 FMN 401 A 1 HETATM 16 C C9A FMN . . . B 2 -26.648 -23.92 -24.023 1 38.13 ? C9A FMN 401 A 1 HETATM 17 N N10 FMN . . . B 2 -26.566 -24.701 -22.844 1 37.97 ? N10 FMN 401 A 1 HETATM 18 C C10 FMN . . . B 2 -25.882 -25.888 -22.835 1 35.75 ? C10 FMN 401 A 1 HETATM 19 C C1' FMN . . . B 2 -27.141 -24.163 -21.598 1 38.16 ? C1' FMN 401 A 1 HETATM 20 C C2' FMN . . . B 2 -26.207 -23.203 -20.866 1 38.94 ? C2' FMN 401 A 1 HETATM 21 O O2' FMN . . . B 2 -24.973 -23.84 -20.533 1 35.94 ? O2' FMN 401 A 1 HETATM 22 C C3' FMN . . . B 2 -26.867 -22.659 -19.597 1 41.24 ? C3' FMN 401 A 1 HETATM 23 O O3' FMN . . . B 2 -27.12 -23.754 -18.726 1 44.29 ? O3' FMN 401 A 1 HETATM 24 C C4' FMN . . . B 2 -28.147 -21.834 -19.752 1 42.01 ? C4' FMN 401 A 1 HETATM 25 O O4' FMN . . . B 2 -28.137 -21.009 -20.922 1 43.02 ? O4' FMN 401 A 1 HETATM 26 C C5' FMN . . . B 2 -28.462 -21.022 -18.515 1 42 ? C5' FMN 401 A 1 HETATM 27 O O5' FMN . . . B 2 -27.349 -20.165 -18.192 1 42.82 ? O5' FMN 401 A 1 HETATM 28 P P FMN . . . B 2 -27.402 -18.594 -18.619 1 45.01 ? P FMN 401 A 1 HETATM 29 O O1P FMN . . . B 2 -27.536 -18.493 -20.085 1 43.58 ? O1P FMN 401 A 1 HETATM 30 O O2P FMN . . . B 2 -28.637 -17.934 -17.93 1 48.23 ? O2P FMN 401 A 1 HETATM 31 O O3P FMN . . . B 2 -26.153 -17.928 -18.01 1 40.65 ? O3P FMN 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #