data_6EZN # _model_server_result.job_id rUeHv109fuGbKLN3go-GVA _model_server_result.datetime_utc '2025-02-26 08:30:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ezn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":503}' # _entry.id 6EZN # _exptl.entry_id 6EZN _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 14 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EZN _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EZN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 14 _struct_asym.id Q _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 9 oligosaccharide 10 oligosaccharide 11 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 9 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 9 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 10 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 11 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 11 3 2 BMA NAG C1 O1 . O4 HO4 . sing 6 ? 11 4 3 MAN BMA C1 O1 . O3 HO3 . sing 7 ? 11 5 4 MAN MAN C1 O1 . O2 HO2 . sing 8 ? 11 6 5 MAN MAN C1 O1 . O2 HO2 . sing 9 ? 11 7 3 MAN BMA C1 O1 . O6 HO6 . sing 10 ? 11 8 7 MAN MAN C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 9 n I NAG 1 I 1 NAG A 1000 NAG 9 n I NAG 2 I 2 NAG A 1001 NAG 9 n I BMA 3 I 3 BMA A 1002 BMA 10 n J NAG 1 J 1 NAG A 2000 NAG 10 n J NAG 2 J 2 NAG A 2001 NAG 11 n K NAG 1 K 1 NAG F 1000 NAG 11 n K NAG 2 K 2 NAG F 1001 NAG 11 n K BMA 3 K 3 BMA F 1002 BMA 11 n K MAN 4 K 4 MAN F 1003 MAN 11 n K MAN 5 K 5 MAN F 1004 MAN 11 n K MAN 6 K 6 MAN F 1005 MAN 11 n K MAN 7 K 7 MAN F 1006 MAN 11 n K MAN 8 K 8 MAN F 1007 MAN 10 n L NAG 1 L 1 NAG G 1000 NAG 10 n L NAG 2 L 2 NAG G 1001 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 336 A ASN 336 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale2 A ND2 ASN 400 A ASN 400 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 F ND2 ASN 539 F ASN 539 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 G ND2 ASN 60 G ASN 60 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 G ND2 ASN 332 G ASN 332 1_555 Q C1 NAG . G NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale6 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale7 I O4 NAG . I NAG 2 1_555 I C1 BMA . I BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale8 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale9 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale10 K O4 NAG . K NAG 2 1_555 K C1 BMA . K BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale11 K O3 BMA . K BMA 3 1_555 K C1 MAN . K MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale12 K O6 BMA . K BMA 3 1_555 K C1 MAN . K MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale13 K O2 MAN . K MAN 4 1_555 K C1 MAN . K MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale14 K O2 MAN . K MAN 5 1_555 K C1 MAN . K MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale15 K O3 MAN . K MAN 7 1_555 K C1 MAN . K MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale16 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 414 n n C1 O1 NAG sing 415 n n C1 O5 NAG sing 416 n n C1 H1 NAG sing 417 n n C2 C3 NAG sing 418 n n C2 N2 NAG sing 419 n n C2 H2 NAG sing 420 n n C3 C4 NAG sing 421 n n C3 O3 NAG sing 422 n n C3 H3 NAG sing 423 n n C4 C5 NAG sing 424 n n C4 O4 NAG sing 425 n n C4 H4 NAG sing 426 n n C5 C6 NAG sing 427 n n C5 O5 NAG sing 428 n n C5 H5 NAG sing 429 n n C6 O6 NAG sing 430 n n C6 H61 NAG sing 431 n n C6 H62 NAG sing 432 n n C7 C8 NAG sing 433 n n C7 N2 NAG sing 434 n n C7 O7 NAG doub 435 n n C8 H81 NAG sing 436 n n C8 H82 NAG sing 437 n n C8 H83 NAG sing 438 n n N2 HN2 NAG sing 439 n n O1 HO1 NAG sing 440 n n O3 HO3 NAG sing 441 n n O4 HO4 NAG sing 442 n n O6 HO6 NAG sing 443 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6EZN _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 12 CPL A 1 506 4 CPL CPL . N 12 CPL E 1 101 1 CPL CPL . O 12 CPL F 1 809 3 CPL CPL . P 13 PTY F 1 810 5 PTY PTY . Q 14 NAG G 1 503 2000 NAG NAG . R 12 CPL H 1 301 2 CPL CPL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . Q 14 120.849 180.907 108.052 1 133.16 ? C1 NAG 503 G 1 HETATM 2 C C2 NAG . . . Q 14 121.536 182.035 107.265 1 133.16 ? C2 NAG 503 G 1 HETATM 3 C C3 NAG . . . Q 14 121.159 181.967 105.786 1 133.16 ? C3 NAG 503 G 1 HETATM 4 C C4 NAG . . . Q 14 121.448 180.584 105.218 1 133.16 ? C4 NAG 503 G 1 HETATM 5 C C5 NAG . . . Q 14 120.707 179.531 106.034 1 133.16 ? C5 NAG 503 G 1 HETATM 6 C C6 NAG . . . Q 14 121.005 178.118 105.589 1 133.16 ? C6 NAG 503 G 1 HETATM 7 C C7 NAG . . . Q 14 121.999 184.029 108.623 1 133.16 ? C7 NAG 503 G 1 HETATM 8 C C8 NAG . . . Q 14 121.476 185.349 109.1 1 133.16 ? C8 NAG 503 G 1 HETATM 9 N N2 NAG . . . Q 14 121.188 183.333 107.82 1 133.16 ? N2 NAG 503 G 1 HETATM 10 O O3 NAG . . . Q 14 121.904 182.943 105.068 1 133.16 ? O3 NAG 503 G 1 HETATM 11 O O4 NAG . . . Q 14 121.025 180.515 103.862 1 133.16 ? O4 NAG 503 G 1 HETATM 12 O O5 NAG . . . Q 14 121.11 179.623 107.408 1 133.16 ? O5 NAG 503 G 1 HETATM 13 O O6 NAG . . . Q 14 120.646 177.912 104.23 1 133.16 ? O6 NAG 503 G 1 HETATM 14 O O7 NAG . . . Q 14 123.105 183.612 108.948 1 133.16 ? O7 NAG 503 G 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #