data_6F00 # _model_server_result.job_id KJgHAHRt0oSHWXOajCTh6g _model_server_result.datetime_utc '2024-12-12 13:41:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6f00 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":504}' # _entry.id 6F00 # _exptl.entry_id 6F00 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 107.69 _cell.angle_beta 107.92 _cell.angle_gamma 107.65 _cell.entry_id 6F00 _cell.length_a 52.25 _cell.length_b 52.21 _cell.length_c 52.31 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6F00 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,S 1 1 B,H,I,J,K,L,M,T 2 1 C,N,O,P,Q,R,U 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 K N N ? 3 L N N ? 3 M N N ? 3 Q N N ? 3 R N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 113 n n C1 C2 GOL sing 114 n n C1 H11 GOL sing 115 n n C1 H12 GOL sing 116 n n O1 HO1 GOL sing 117 n n C2 O2 GOL sing 118 n n C2 C3 GOL sing 119 n n C2 H2 GOL sing 120 n n O2 HO2 GOL sing 121 n n C3 O3 GOL sing 122 n n C3 H31 GOL sing 123 n n C3 H32 GOL sing 124 n n O3 HO3 GOL sing 125 n n # _atom_sites.entry_id 6F00 _atom_sites.fract_transf_matrix[1][1] 0.019139 _atom_sites.fract_transf_matrix[1][2] 0.00609 _atom_sites.fract_transf_matrix[1][3] 0.009852 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0201 _atom_sites.fract_transf_matrix[2][3] 0.009794 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 B 1 501 444 SO4 SO4 . E 2 SO4 B 1 502 445 SO4 SO4 . F 2 SO4 B 1 503 446 SO4 SO4 . G 2 SO4 B 1 504 447 SO4 SO4 . H 2 SO4 A 1 501 442 SO4 SO4 . I 2 SO4 A 1 502 443 SO4 SO4 . J 2 SO4 A 1 503 444 SO4 SO4 . K 3 GOL A 1 504 445 GOL GOL . L 3 GOL A 1 505 446 GOL GOL . M 3 GOL A 1 506 447 GOL GOL . N 2 SO4 C 1 501 442 SO4 SO4 . O 2 SO4 C 1 502 443 SO4 SO4 . P 2 SO4 C 1 503 444 SO4 SO4 . Q 3 GOL C 1 504 445 GOL GOL . R 3 GOL C 1 505 446 GOL GOL . S 4 HOH B 1 601 474 HOH HOH . S 4 HOH B 2 602 486 HOH HOH . S 4 HOH B 3 603 454 HOH HOH . S 4 HOH B 4 604 453 HOH HOH . S 4 HOH B 5 605 500 HOH HOH . S 4 HOH B 6 606 506 HOH HOH . S 4 HOH B 7 607 510 HOH HOH . S 4 HOH B 8 608 470 HOH HOH . S 4 HOH B 9 609 450 HOH HOH . S 4 HOH B 10 610 475 HOH HOH . S 4 HOH B 11 611 504 HOH HOH . S 4 HOH B 12 612 491 HOH HOH . S 4 HOH B 13 613 457 HOH HOH . S 4 HOH B 14 614 481 HOH HOH . S 4 HOH B 15 615 449 HOH HOH . S 4 HOH B 16 616 451 HOH HOH . S 4 HOH B 17 617 456 HOH HOH . S 4 HOH B 18 618 452 HOH HOH . S 4 HOH B 19 619 497 HOH HOH . S 4 HOH B 20 620 494 HOH HOH . S 4 HOH B 21 621 467 HOH HOH . S 4 HOH B 22 622 484 HOH HOH . S 4 HOH B 23 623 476 HOH HOH . S 4 HOH B 24 624 511 HOH HOH . S 4 HOH B 25 625 465 HOH HOH . S 4 HOH B 26 626 482 HOH HOH . S 4 HOH B 27 627 508 HOH HOH . S 4 HOH B 28 628 462 HOH HOH . S 4 HOH B 29 629 458 HOH HOH . S 4 HOH B 30 630 455 HOH HOH . S 4 HOH B 31 631 448 HOH HOH . S 4 HOH B 32 632 473 HOH HOH . S 4 HOH B 33 633 468 HOH HOH . S 4 HOH B 34 634 466 HOH HOH . S 4 HOH B 35 635 478 HOH HOH . S 4 HOH B 36 636 480 HOH HOH . S 4 HOH B 37 637 471 HOH HOH . S 4 HOH B 38 638 469 HOH HOH . S 4 HOH B 39 639 489 HOH HOH . S 4 HOH B 40 640 505 HOH HOH . S 4 HOH B 41 641 460 HOH HOH . S 4 HOH B 42 642 485 HOH HOH . S 4 HOH B 43 643 495 HOH HOH . S 4 HOH B 44 644 493 HOH HOH . S 4 HOH B 45 645 464 HOH HOH . S 4 HOH B 46 646 459 HOH HOH . S 4 HOH B 47 647 509 HOH HOH . S 4 HOH B 48 648 506 HOH HOH . S 4 HOH B 49 649 492 HOH HOH . S 4 HOH B 50 650 488 HOH HOH . S 4 HOH B 51 651 477 HOH HOH . S 4 HOH B 52 652 487 HOH HOH . S 4 HOH B 53 653 483 HOH HOH . S 4 HOH B 54 654 513 HOH HOH . S 4 HOH B 55 655 496 HOH HOH . S 4 HOH B 56 656 499 HOH HOH . S 4 HOH B 57 657 490 HOH HOH . S 4 HOH B 58 658 498 HOH HOH . S 4 HOH B 59 659 463 HOH HOH . S 4 HOH B 60 660 501 HOH HOH . S 4 HOH B 61 661 502 HOH HOH . S 4 HOH B 62 662 479 HOH HOH . S 4 HOH B 63 663 472 HOH HOH . S 4 HOH B 64 664 461 HOH HOH . S 4 HOH B 65 665 503 HOH HOH . T 4 HOH A 1 601 451 HOH HOH . T 4 HOH A 2 602 450 HOH HOH . T 4 HOH A 3 603 448 HOH HOH . T 4 HOH A 4 604 455 HOH HOH . T 4 HOH A 5 605 452 HOH HOH . T 4 HOH A 6 606 507 HOH HOH . T 4 HOH A 7 607 461 HOH HOH . T 4 HOH A 8 608 467 HOH HOH . T 4 HOH A 9 609 508 HOH HOH . T 4 HOH A 10 610 473 HOH HOH . T 4 HOH A 11 611 459 HOH HOH . T 4 HOH A 12 612 515 HOH HOH . T 4 HOH A 13 613 456 HOH HOH . T 4 HOH A 14 614 449 HOH HOH . T 4 HOH A 15 615 490 HOH HOH . T 4 HOH A 16 616 498 HOH HOH . T 4 HOH A 17 617 480 HOH HOH . T 4 HOH A 18 618 481 HOH HOH . T 4 HOH A 19 619 501 HOH HOH . T 4 HOH A 20 620 463 HOH HOH . T 4 HOH A 21 621 512 HOH HOH . T 4 HOH A 22 622 462 HOH HOH . T 4 HOH A 23 623 476 HOH HOH . T 4 HOH A 24 624 472 HOH HOH . T 4 HOH A 25 625 453 HOH HOH . T 4 HOH A 26 626 454 HOH HOH . T 4 HOH A 27 627 503 HOH HOH . T 4 HOH A 28 628 485 HOH HOH . T 4 HOH A 29 629 464 HOH HOH . T 4 HOH A 30 630 479 HOH HOH . T 4 HOH A 31 631 513 HOH HOH . T 4 HOH A 32 632 496 HOH HOH . T 4 HOH A 33 633 492 HOH HOH . T 4 HOH A 34 634 460 HOH HOH . T 4 HOH A 35 635 487 HOH HOH . T 4 HOH A 36 636 494 HOH HOH . T 4 HOH A 37 637 458 HOH HOH . T 4 HOH A 38 638 470 HOH HOH . T 4 HOH A 39 639 471 HOH HOH . T 4 HOH A 40 640 497 HOH HOH . T 4 HOH A 41 641 504 HOH HOH . T 4 HOH A 42 642 482 HOH HOH . T 4 HOH A 43 643 457 HOH HOH . T 4 HOH A 44 644 477 HOH HOH . T 4 HOH A 45 645 511 HOH HOH . T 4 HOH A 46 646 466 HOH HOH . T 4 HOH A 47 647 489 HOH HOH . T 4 HOH A 48 648 495 HOH HOH . T 4 HOH A 49 649 488 HOH HOH . T 4 HOH A 50 650 469 HOH HOH . T 4 HOH A 51 651 509 HOH HOH . T 4 HOH A 52 652 493 HOH HOH . T 4 HOH A 53 653 468 HOH HOH . T 4 HOH A 54 654 465 HOH HOH . T 4 HOH A 55 655 512 HOH HOH . T 4 HOH A 56 656 483 HOH HOH . T 4 HOH A 57 657 500 HOH HOH . T 4 HOH A 58 658 484 HOH HOH . T 4 HOH A 59 659 510 HOH HOH . T 4 HOH A 60 660 475 HOH HOH . T 4 HOH A 61 661 499 HOH HOH . T 4 HOH A 62 662 514 HOH HOH . T 4 HOH A 63 663 502 HOH HOH . T 4 HOH A 64 664 486 HOH HOH . T 4 HOH A 65 665 474 HOH HOH . T 4 HOH A 66 666 491 HOH HOH . T 4 HOH A 67 667 507 HOH HOH . U 4 HOH C 1 601 448 HOH HOH . U 4 HOH C 2 602 471 HOH HOH . U 4 HOH C 3 603 450 HOH HOH . U 4 HOH C 4 604 466 HOH HOH . U 4 HOH C 5 605 478 HOH HOH . U 4 HOH C 6 606 464 HOH HOH . U 4 HOH C 7 607 456 HOH HOH . U 4 HOH C 8 608 463 HOH HOH . U 4 HOH C 9 609 461 HOH HOH . U 4 HOH C 10 610 457 HOH HOH . U 4 HOH C 11 611 458 HOH HOH . U 4 HOH C 12 612 476 HOH HOH . U 4 HOH C 13 613 480 HOH HOH . U 4 HOH C 14 614 467 HOH HOH . U 4 HOH C 15 615 465 HOH HOH . U 4 HOH C 16 616 491 HOH HOH . U 4 HOH C 17 617 472 HOH HOH . U 4 HOH C 18 618 447 HOH HOH . U 4 HOH C 19 619 493 HOH HOH . U 4 HOH C 20 620 453 HOH HOH . U 4 HOH C 21 621 473 HOH HOH . U 4 HOH C 22 622 451 HOH HOH . U 4 HOH C 23 623 475 HOH HOH . U 4 HOH C 24 624 454 HOH HOH . U 4 HOH C 25 625 484 HOH HOH . U 4 HOH C 26 626 462 HOH HOH . U 4 HOH C 27 627 449 HOH HOH . U 4 HOH C 28 628 488 HOH HOH . U 4 HOH C 29 629 483 HOH HOH . U 4 HOH C 30 630 460 HOH HOH . U 4 HOH C 31 631 487 HOH HOH . U 4 HOH C 32 632 468 HOH HOH . U 4 HOH C 33 633 477 HOH HOH . U 4 HOH C 34 634 455 HOH HOH . U 4 HOH C 35 635 485 HOH HOH . U 4 HOH C 36 636 452 HOH HOH . U 4 HOH C 37 637 492 HOH HOH . U 4 HOH C 38 638 496 HOH HOH . U 4 HOH C 39 639 470 HOH HOH . U 4 HOH C 40 640 482 HOH HOH . U 4 HOH C 41 641 498 HOH HOH . U 4 HOH C 42 642 474 HOH HOH . U 4 HOH C 43 643 495 HOH HOH . U 4 HOH C 44 644 481 HOH HOH . U 4 HOH C 45 645 494 HOH HOH . U 4 HOH C 46 646 489 HOH HOH . U 4 HOH C 47 647 469 HOH HOH . U 4 HOH C 48 648 499 HOH HOH . U 4 HOH C 49 649 497 HOH HOH . U 4 HOH C 50 650 479 HOH HOH . U 4 HOH C 51 651 478 HOH HOH . U 4 HOH C 52 652 490 HOH HOH . U 4 HOH C 53 653 486 HOH HOH . U 4 HOH C 54 654 505 HOH HOH . U 4 HOH C 55 655 459 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 3 0.019 12.858 -15.868 1 45.96 ? C1 GOL 504 A 1 HETATM 2 O O1 GOL . . . K 3 -1.2 12.137 -15.551 1 52.91 ? O1 GOL 504 A 1 HETATM 3 C C2 GOL . . . K 3 1.174 12.306 -14.859 1 41.1 ? C2 GOL 504 A 1 HETATM 4 O O2 GOL . . . K 3 1.191 13.052 -13.689 1 40.62 ? O2 GOL 504 A 1 HETATM 5 C C3 GOL . . . K 3 2.576 12.335 -15.665 1 46.91 ? C3 GOL 504 A 1 HETATM 6 O O3 GOL . . . K 3 3.534 11.398 -15.053 1 42.66 ? O3 GOL 504 A 1 HETATM 7 H H11 GOL . . . K 3 -0.072 13.818 -15.762 1 55.22 ? H11 GOL 504 A 1 HETATM 8 H H12 GOL . . . K 3 0.289 12.717 -16.789 1 55.22 ? H12 GOL 504 A 1 HETATM 9 H HO1 GOL . . . K 3 -1.782 12.385 -16.118 1 63.56 ? HO1 GOL 504 A 1 HETATM 10 H H2 GOL . . . K 3 0.967 11.4 -14.582 1 49.38 ? H2 GOL 504 A 1 HETATM 11 H HO2 GOL . . . K 3 1.856 12.796 -13.226 1 48.81 ? HO2 GOL 504 A 1 HETATM 12 H H31 GOL . . . K 3 2.4 12.145 -16.6 1 56.36 ? H31 GOL 504 A 1 HETATM 13 H H32 GOL . . . K 3 2.92 13.241 -15.662 1 56.36 ? H32 GOL 504 A 1 HETATM 14 H HO3 GOL . . . K 3 4.293 11.78 -15.07 1 51.26 ? HO3 GOL 504 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #