data_6F0B # _model_server_result.job_id NUQTt7YU7i2dX_fKBU0Uqw _model_server_result.datetime_utc '2025-02-05 13:00:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6f0b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6F0B # _exptl.entry_id 6F0B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 135.16 _cell.angle_gamma 90 _cell.entry_id 6F0B _cell.length_a 116.78 _cell.length_b 84.24 _cell.length_c 86.27 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6F0B _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 27 A CYS 27 1_555 A SG CYS 27 A CYS 27 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc1 A SG CYS 344 A CYS 344 1_555 B FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 184 n n CHA C4D HEM doub 185 n n CHA HHA HEM sing 186 n n CHB C4A HEM sing 187 n n CHB C1B HEM doub 188 n n CHB HHB HEM sing 189 n n CHC C4B HEM sing 190 n n CHC C1C HEM doub 191 n n CHC HHC HEM sing 192 n n CHD C4C HEM doub 193 n n CHD C1D HEM sing 194 n n CHD HHD HEM sing 195 n n C1A C2A HEM doub 196 n y C1A NA HEM sing 197 n y C2A C3A HEM sing 198 n y C2A CAA HEM sing 199 n n C3A C4A HEM doub 200 n y C3A CMA HEM sing 201 n n C4A NA HEM sing 202 n y CMA HMA HEM sing 203 n n CMA HMAA HEM sing 204 n n CMA HMAB HEM sing 205 n n CAA CBA HEM sing 206 n n CAA HAA HEM sing 207 n n CAA HAAA HEM sing 208 n n CBA CGA HEM sing 209 n n CBA HBA HEM sing 210 n n CBA HBAA HEM sing 211 n n CGA O1A HEM doub 212 n n CGA O2A HEM sing 213 n n C1B C2B HEM sing 214 n n C1B NB HEM sing 215 n n C2B C3B HEM doub 216 n n C2B CMB HEM sing 217 n n C3B C4B HEM sing 218 n n C3B CAB HEM sing 219 n n C4B NB HEM doub 220 n n CMB HMB HEM sing 221 n n CMB HMBA HEM sing 222 n n CMB HMBB HEM sing 223 n n CAB CBB HEM doub 224 n n CAB HAB HEM sing 225 n n CBB HBB HEM sing 226 n n CBB HBBA HEM sing 227 n n C1C C2C HEM sing 228 n y C1C NC HEM sing 229 n y C2C C3C HEM doub 230 n y C2C CMC HEM sing 231 n n C3C C4C HEM sing 232 n y C3C CAC HEM sing 233 n n C4C NC HEM sing 234 n y CMC HMC HEM sing 235 n n CMC HMCA HEM sing 236 n n CMC HMCB HEM sing 237 n n CAC CBC HEM doub 238 n n CAC HAC HEM sing 239 n n CBC HBC HEM sing 240 n n CBC HBCA HEM sing 241 n n C1D C2D HEM sing 242 n n C1D ND HEM doub 243 n n C2D C3D HEM doub 244 n n C2D CMD HEM sing 245 n n C3D C4D HEM sing 246 n n C3D CAD HEM sing 247 n n C4D ND HEM sing 248 n n CMD HMD HEM sing 249 n n CMD HMDA HEM sing 250 n n CMD HMDB HEM sing 251 n n CAD CBD HEM sing 252 n n CAD HAD HEM sing 253 n n CAD HADA HEM sing 254 n n CBD CGD HEM sing 255 n n CBD HBD HEM sing 256 n n CBD HBDA HEM sing 257 n n CGD O1D HEM doub 258 n n CGD O2D HEM sing 259 n n O2A H2A HEM sing 260 n n O2D H2D HEM sing 261 n n FE NA HEM sing 262 n n FE NB HEM sing 263 n n FE NC HEM sing 264 n n FE ND HEM sing 265 n n # _atom_sites.entry_id 6F0B _atom_sites.fract_transf_matrix[1][1] 0.008563 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008611 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011871 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016439 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 401 401 HEM HEM . C 3 C8H A 1 402 402 C8H TD1 . D 4 HOH A 1 501 9 HOH HOH . D 4 HOH A 2 502 13 HOH HOH . D 4 HOH A 3 503 3 HOH HOH . D 4 HOH A 4 504 2 HOH HOH . D 4 HOH A 5 505 6 HOH HOH . D 4 HOH A 6 506 14 HOH HOH . D 4 HOH A 7 507 4 HOH HOH . D 4 HOH A 8 508 1 HOH HOH . D 4 HOH A 9 509 5 HOH HOH . D 4 HOH A 10 510 10 HOH HOH . D 4 HOH A 11 511 8 HOH HOH . D 4 HOH A 12 512 12 HOH HOH . D 4 HOH A 13 513 11 HOH HOH . D 4 HOH A 14 514 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -37.691 -5.55 3.341 1 26.3 ? CHA HEM 401 A 1 HETATM 2 C CHB HEM . . . B 2 -33.555 -3.302 4.149 1 24.85 ? CHB HEM 401 A 1 HETATM 3 C CHC HEM . . . B 2 -33.313 -2.497 -0.518 1 22.14 ? CHC HEM 401 A 1 HETATM 4 C CHD HEM . . . B 2 -37.692 -3.925 -1.094 1 20.47 ? CHD HEM 401 A 1 HETATM 5 C C1A HEM . . . B 2 -36.568 -5.095 3.941 1 29.49 ? C1A HEM 401 A 1 HETATM 6 C C2A HEM . . . B 2 -36.339 -5.278 5.374 1 26.18 ? C2A HEM 401 A 1 HETATM 7 C C3A HEM . . . B 2 -35.145 -4.663 5.545 1 28.58 ? C3A HEM 401 A 1 HETATM 8 C C4A HEM . . . B 2 -34.688 -4.072 4.289 1 26.28 ? C4A HEM 401 A 1 HETATM 9 C CMA HEM . . . B 2 -34.442 -4.615 6.84 1 28.06 ? CMA HEM 401 A 1 HETATM 10 C CAA HEM . . . B 2 -37.056 -6.083 6.435 1 22.39 ? CAA HEM 401 A 1 HETATM 11 C CBA HEM . . . B 2 -38.488 -5.744 6.841 1 25.39 ? CBA HEM 401 A 1 HETATM 12 C CGA HEM . . . B 2 -39.007 -6.598 7.999 1 30.99 ? CGA HEM 401 A 1 HETATM 13 O O1A HEM . . . B 2 -38.471 -7.767 8.191 1 30.26 ? O1A HEM 401 A 1 HETATM 14 O O2A HEM . . . B 2 -39.98 -6.25 8.742 1 34.91 ? O2A HEM 401 A 1 HETATM 15 C C1B HEM . . . B 2 -33.173 -2.832 2.907 1 23 ? C1B HEM 401 A 1 HETATM 16 C C2B HEM . . . B 2 -31.902 -2.199 2.705 1 19.18 ? C2B HEM 401 A 1 HETATM 17 C C3B HEM . . . B 2 -31.769 -1.982 1.395 1 18.82 ? C3B HEM 401 A 1 HETATM 18 C C4B HEM . . . B 2 -33.058 -2.503 0.803 1 19.94 ? C4B HEM 401 A 1 HETATM 19 C CMB HEM . . . B 2 -30.934 -1.932 3.736 1 21.22 ? CMB HEM 401 A 1 HETATM 20 C CAB HEM . . . B 2 -30.685 -1.363 0.693 1 21.17 ? CAB HEM 401 A 1 HETATM 21 C CBB HEM . . . B 2 -29.588 -0.895 1.347 1 29.9 ? CBB HEM 401 A 1 HETATM 22 C C1C HEM . . . B 2 -34.469 -2.833 -1.118 1 22.45 ? C1C HEM 401 A 1 HETATM 23 C C2C HEM . . . B 2 -34.727 -2.669 -2.536 1 23.5 ? C2C HEM 401 A 1 HETATM 24 C C3C HEM . . . B 2 -36.018 -3.047 -2.699 1 25.07 ? C3C HEM 401 A 1 HETATM 25 C C4C HEM . . . B 2 -36.484 -3.45 -1.343 1 21.85 ? C4C HEM 401 A 1 HETATM 26 C CMC HEM . . . B 2 -33.768 -2.193 -3.541 1 26.75 ? CMC HEM 401 A 1 HETATM 27 C CAC HEM . . . B 2 -36.811 -3.124 -3.914 1 28.98 ? CAC HEM 401 A 1 HETATM 28 C CBC HEM . . . B 2 -36.37 -2.786 -5.129 1 38.2 ? CBC HEM 401 A 1 HETATM 29 C C1D HEM . . . B 2 -37.996 -4.484 0.091 1 24.68 ? C1D HEM 401 A 1 HETATM 30 C C2D HEM . . . B 2 -39.37 -5.075 0.287 1 23.88 ? C2D HEM 401 A 1 HETATM 31 C C3D HEM . . . B 2 -39.372 -5.542 1.522 1 27.11 ? C3D HEM 401 A 1 HETATM 32 C C4D HEM . . . B 2 -38.012 -5.192 2.059 1 24.37 ? C4D HEM 401 A 1 HETATM 33 C CMD HEM . . . B 2 -40.433 -5.176 -0.738 1 24.95 ? CMD HEM 401 A 1 HETATM 34 C CAD HEM . . . B 2 -40.446 -6.335 2.24 1 33.06 ? CAD HEM 401 A 1 HETATM 35 C CBD HEM . . . B 2 -40.011 -7.826 2.598 1 39.95 ? CBD HEM 401 A 1 HETATM 36 C CGD HEM . . . B 2 -41.193 -8.678 3.115 1 48.73 ? CGD HEM 401 A 1 HETATM 37 O O1D HEM . . . B 2 -41.487 -9.743 2.477 1 44.23 ? O1D HEM 401 A 1 HETATM 38 O O2D HEM . . . B 2 -41.958 -8.322 4.092 1 37.31 ? O2D HEM 401 A 1 HETATM 39 N NA HEM . . . B 2 -35.575 -4.342 3.331 1 18.92 ? NA HEM 401 A 1 HETATM 40 N NB HEM . . . B 2 -33.728 -3.053 1.734 1 18.01 ? NB HEM 401 A 1 HETATM 41 N NC HEM . . . B 2 -35.501 -3.325 -0.486 1 15.5 ? NC HEM 401 A 1 HETATM 42 N ND HEM . . . B 2 -37.251 -4.593 1.166 1 19.81 ? ND HEM 401 A 1 HETATM 43 FE FE HEM . . . B 2 -35.544 -3.861 1.439 1 32.4 ? FE HEM 401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #