data_6F0I # _model_server_result.job_id TXUEUwA5jjIWJ4F-engDwg _model_server_result.datetime_utc '2024-11-27 11:58:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6f0i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":401}' # _entry.id 6F0I # _exptl.entry_id 6F0I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.14 _cell.angle_gamma 90 _cell.entry_id 6F0I _cell.length_a 181.067 _cell.length_b 133.412 _cell.length_c 159.241 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6F0I _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 Q N N ? 4 U N N ? 4 X N N ? 4 CA N N ? 4 HA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ILE 71 A ILE 71 1_555 J NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc2 B O ILE 71 B ILE 71 1_555 Q NA NA . B NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc3 C O ILE 71 C ILE 71 1_555 X NA NA . C NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc4 D O ILE 71 D ILE 71 1_555 CA NA NA . D NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc5 E O PRO 68 E PRO 68 1_555 HA NA NA . E NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc6 E O ILE 71 E ILE 71 1_555 HA NA NA . E NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6F0I _atom_sites.fract_transf_matrix[1][1] 0.005523 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001188 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007496 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006423 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 ACT A 1 401 401 ACT ACT . G 3 CL A 1 402 405 CL CL . H 3 CL A 1 403 406 CL CL . I 3 CL A 1 404 407 CL CL . J 4 NA A 1 405 408 NA NA . K 2 ACT A 1 406 410 ACT ACT . L 5 LMT A 1 407 411 LMT LMT . M 5 LMT A 1 408 412 LMT LMT . N 2 ACT B 1 401 401 ACT ACT . O 6 PLC B 1 402 403 PLC PLC . P 3 CL B 1 403 405 CL CL . Q 4 NA B 1 404 406 NA NA . R 2 ACT B 1 405 407 ACT ACT . S 5 LMT B 1 406 408 LMT LMT . T 2 ACT B 1 407 401 ACT ACT . U 4 NA C 1 401 409 NA NA . V 6 PLC C 1 402 402 PLC PLC . W 3 CL C 1 403 405 CL CL . X 4 NA C 1 404 406 NA NA . Y 2 ACT C 1 405 407 ACT ACT . Z 5 LMT C 1 406 408 LMT LMT . AA 2 ACT D 1 401 401 ACT ACT . BA 3 CL D 1 402 405 CL CL . CA 4 NA D 1 403 406 NA NA . DA 2 ACT D 1 404 407 ACT ACT . EA 5 LMT D 1 405 408 LMT LMT . FA 2 ACT E 1 401 401 ACT ACT . GA 3 CL E 1 402 405 CL CL . HA 4 NA E 1 403 406 NA NA . IA 2 ACT E 1 404 407 ACT ACT . JA 5 LMT E 1 405 408 LMT LMT . KA 7 HOH A 1 501 414 HOH HOH . KA 7 HOH A 2 502 572 HOH HOH . KA 7 HOH A 3 503 579 HOH HOH . KA 7 HOH A 4 504 565 HOH HOH . KA 7 HOH A 5 505 501 HOH HOH . KA 7 HOH A 6 506 503 HOH HOH . LA 7 HOH B 1 501 566 HOH HOH . LA 7 HOH B 2 502 528 HOH HOH . LA 7 HOH B 3 503 412 HOH HOH . LA 7 HOH B 4 504 559 HOH HOH . LA 7 HOH B 5 505 562 HOH HOH . LA 7 HOH B 6 506 622 HOH HOH . LA 7 HOH B 7 507 560 HOH HOH . LA 7 HOH B 8 508 504 HOH HOH . LA 7 HOH B 9 509 512 HOH HOH . LA 7 HOH B 10 510 501 HOH HOH . MA 7 HOH C 1 501 409 HOH HOH . MA 7 HOH C 2 502 551 HOH HOH . MA 7 HOH C 3 503 550 HOH HOH . MA 7 HOH C 4 504 510 HOH HOH . MA 7 HOH C 5 505 549 HOH HOH . MA 7 HOH C 6 506 521 HOH HOH . MA 7 HOH C 7 507 501 HOH HOH . MA 7 HOH C 8 508 501 HOH HOH . NA 7 HOH D 1 501 526 HOH HOH . NA 7 HOH D 2 502 410 HOH HOH . NA 7 HOH D 3 503 540 HOH HOH . NA 7 HOH D 4 504 539 HOH HOH . NA 7 HOH D 5 505 559 HOH HOH . NA 7 HOH D 6 506 566 HOH HOH . OA 7 HOH E 1 501 413 HOH HOH . OA 7 HOH E 2 502 560 HOH HOH . OA 7 HOH E 3 503 510 HOH HOH . OA 7 HOH E 4 504 411 HOH HOH . OA 7 HOH E 5 505 577 HOH HOH . OA 7 HOH E 6 506 501 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id U _atom_site.label_entity_id 4 _atom_site.Cartn_x 64.843 _atom_site.Cartn_y -27.072 _atom_site.Cartn_z 60.417 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 71.75 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #