data_6F0J
#
_model_server_result.job_id            DcaMgLJ5pOLx1XT93XqxjA 
_model_server_result.datetime_utc      '2024-11-23 19:00:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6f0j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":401}' 
#
_entry.id    6F0J 
#
_exptl.entry_id    6F0J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              622.834 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIUNDECYL PHOSPHATIDYL CHOLINE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.14 
_cell.angle_gamma         90 
_cell.entry_id            6F0J 
_cell.length_a            181.01 
_cell.length_b            133.11 
_cell.length_c            159.85 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6F0J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 P N N 
? 6 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ILE 71 A ILE 71 1_555 J NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
metalc ? metalc2 B O PRO 68 B PRO 68 1_555 R NA NA . B NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.116 ? 
metalc ? metalc3 B O ILE 71 B ILE 71 1_555 R NA NA . B NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? 
metalc ? metalc4 C O PRO 68 C PRO 68 1_555 X NA NA . C NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? 
metalc ? metalc5 C O ILE 71 C ILE 71 1_555 X NA NA . C NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? 
metalc ? metalc6 D O ILE 71 D ILE 71 1_555 CA NA NA . D NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? 
metalc ? metalc7 E O PRO 68 E PRO 68 1_555 HA NA NA . E NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? 
metalc ? metalc8 E O ILE 71 E ILE 71 1_555 HA NA NA . E NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? 
#
_chem_comp.formula           'C32 H65 N O8 P 1' 
_chem_comp.formula_weight    622.834 
_chem_comp.id                PLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIUNDECYL PHOSPHATIDYL CHOLINE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PLC sing 348 n n 
C1 O3P PLC sing 349 n n 
C1 H11 PLC sing 350 n n 
C1 H12 PLC sing 351 n n 
C2 C3 PLC sing 352 n n 
C2 O2 PLC sing 353 n n 
C2 H2 PLC sing 354 n n 
C3 O3 PLC sing 355 n n 
C3 H31 PLC sing 356 n n 
C3 H32 PLC sing 357 n n 
C4 C5 PLC sing 358 n n 
C4 O4P PLC sing 359 n n 
C4 H41 PLC sing 360 n n 
C4 H42 PLC sing 361 n n 
C5 N PLC sing 362 n n 
C5 H51 PLC sing 363 n n 
C5 H52 PLC sing 364 n n 
C6 N PLC sing 365 n n 
C6 H61 PLC sing 366 n n 
C6 H62 PLC sing 367 n n 
C6 H63 PLC sing 368 n n 
C7 N PLC sing 369 n n 
C7 H71 PLC sing 370 n n 
C7 H72 PLC sing 371 n n 
C7 H73 PLC sing 372 n n 
C8 N PLC sing 373 n n 
C8 H81 PLC sing 374 n n 
C8 H82 PLC sing 375 n n 
C8 H83 PLC sing 376 n n 
C' C1' PLC sing 377 n n 
C' O' PLC doub 378 n n 
C' O2 PLC sing 379 n n 
C1' C2' PLC sing 380 n n 
C1' "H1'1" PLC sing 381 n n 
C1' "H1'2" PLC sing 382 n n 
C2' C3' PLC sing 383 n n 
C2' "H2'1" PLC sing 384 n n 
C2' "H2'2" PLC sing 385 n n 
C3' C4' PLC sing 386 n n 
C3' "H3'1" PLC sing 387 n n 
C3' "H3'2" PLC sing 388 n n 
C4' C5' PLC sing 389 n n 
C4' "H4'1" PLC sing 390 n n 
C4' "H4'2" PLC sing 391 n n 
C5' C6' PLC sing 392 n n 
C5' "H5'1" PLC sing 393 n n 
C5' "H5'2" PLC sing 394 n n 
C6' C7' PLC sing 395 n n 
C6' "H6'1" PLC sing 396 n n 
C6' "H6'2" PLC sing 397 n n 
C7' C8' PLC sing 398 n n 
C7' "H7'1" PLC sing 399 n n 
C7' "H7'2" PLC sing 400 n n 
C8' C9' PLC sing 401 n n 
C8' "H8'1" PLC sing 402 n n 
C8' "H8'2" PLC sing 403 n n 
C9' CA' PLC sing 404 n n 
C9' "H9'1" PLC sing 405 n n 
C9' "H9'2" PLC sing 406 n n 
CA' CB' PLC sing 407 n n 
CA' "HT'1" PLC sing 408 n n 
CA' "HT'2" PLC sing 409 n n 
CB' "HE'1" PLC sing 410 n n 
CB' "HE'2" PLC sing 411 n n 
CB' "HE'3" PLC sing 412 n n 
CB C1B PLC sing 413 n n 
CB OB PLC doub 414 n n 
CB O3 PLC sing 415 n n 
C1B C2B PLC sing 416 n n 
C1B H1A1 PLC sing 417 n n 
C1B H1A2 PLC sing 418 n n 
C2B C3B PLC sing 419 n n 
C2B H2A1 PLC sing 420 n n 
C2B H2A2 PLC sing 421 n n 
C3B C4B PLC sing 422 n n 
C3B H3A1 PLC sing 423 n n 
C3B H3A2 PLC sing 424 n n 
C4B C5B PLC sing 425 n n 
C4B H4A1 PLC sing 426 n n 
C4B H4A2 PLC sing 427 n n 
C5B C6B PLC sing 428 n n 
C5B H5A1 PLC sing 429 n n 
C5B H5A2 PLC sing 430 n n 
C6B C7B PLC sing 431 n n 
C6B H6A1 PLC sing 432 n n 
C6B H6A2 PLC sing 433 n n 
C7B C8B PLC sing 434 n n 
C7B H7A1 PLC sing 435 n n 
C7B H7A2 PLC sing 436 n n 
C8B C9B PLC sing 437 n n 
C8B H8A1 PLC sing 438 n n 
C8B H8A2 PLC sing 439 n n 
C9B CAA PLC sing 440 n n 
C9B H9A1 PLC sing 441 n n 
C9B H9A2 PLC sing 442 n n 
CAA CBA PLC sing 443 n n 
CAA HTA1 PLC sing 444 n n 
CAA HTA2 PLC sing 445 n n 
CBA HEA1 PLC sing 446 n n 
CBA HEA2 PLC sing 447 n n 
CBA HEA3 PLC sing 448 n n 
O1P P PLC doub 449 n n 
O2P P PLC sing 450 n n 
O2P HOP2 PLC sing 451 n n 
O3P P PLC sing 452 n n 
O4P P PLC sing 453 n n 
#
_atom_sites.entry_id                     6F0J 
_atom_sites.fract_transf_matrix[1][1]    0.005525 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001188 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007513 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006399 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 ACT A 1 401 401 ACT ACT . 
G 3 CL A 1 402 405 CL CL . 
H 3 CL A 1 403 406 CL CL . 
I 3 CL A 1 404 407 CL CL . 
J 4 NA A 1 405 408 NA NA . 
K 4 NA A 1 406 409 NA NA . 
L 2 ACT A 1 407 410 ACT ACT . 
M 5 LMT A 1 408 411 LMT LMT . 
N 5 LMT A 1 409 412 LMT LMT . 
O 2 ACT B 1 401 401 ACT ACT . 
P 6 PLC B 1 402 403 PLC PLC . 
Q 3 CL B 1 403 405 CL CL . 
R 4 NA B 1 404 406 NA NA . 
S 2 ACT B 1 405 407 ACT ACT . 
T 5 LMT B 1 406 408 LMT LMT . 
U 2 ACT B 1 407 401 ACT ACT . 
V 6 PLC C 1 401 402 PLC PLC . 
W 3 CL C 1 402 405 CL CL . 
X 4 NA C 1 403 406 NA NA . 
Y 2 ACT C 1 404 407 ACT ACT . 
Z 5 LMT C 1 405 408 LMT LMT . 
AA 2 ACT C 1 406 401 ACT ACT . 
BA 3 CL D 1 401 405 CL CL . 
CA 4 NA D 1 402 406 NA NA . 
DA 2 ACT D 1 403 407 ACT ACT . 
EA 5 LMT D 1 404 408 LMT LMT . 
FA 2 ACT E 1 401 401 ACT ACT . 
GA 3 CL E 1 402 405 CL CL . 
HA 4 NA E 1 403 406 NA NA . 
IA 2 ACT E 1 404 407 ACT ACT . 
JA 5 LMT E 1 405 408 LMT LMT . 
KA 7 HOH A 1 501 414 HOH HOH . 
KA 7 HOH A 2 502 572 HOH HOH . 
KA 7 HOH A 3 503 565 HOH HOH . 
KA 7 HOH A 4 504 579 HOH HOH . 
KA 7 HOH A 5 505 501 HOH HOH . 
KA 7 HOH A 6 506 503 HOH HOH . 
KA 7 HOH A 7 507 501 HOH HOH . 
LA 7 HOH B 1 501 566 HOH HOH . 
LA 7 HOH B 2 502 559 HOH HOH . 
LA 7 HOH B 3 503 528 HOH HOH . 
LA 7 HOH B 4 504 622 HOH HOH . 
LA 7 HOH B 5 505 560 HOH HOH . 
LA 7 HOH B 6 506 562 HOH HOH . 
LA 7 HOH B 7 507 504 HOH HOH . 
LA 7 HOH B 8 508 412 HOH HOH . 
LA 7 HOH B 9 509 512 HOH HOH . 
MA 7 HOH C 1 501 510 HOH HOH . 
MA 7 HOH C 2 502 409 HOH HOH . 
MA 7 HOH C 3 503 551 HOH HOH . 
MA 7 HOH C 4 504 550 HOH HOH . 
MA 7 HOH C 5 505 549 HOH HOH . 
MA 7 HOH C 6 506 521 HOH HOH . 
MA 7 HOH C 7 507 501 HOH HOH . 
NA 7 HOH D 1 501 526 HOH HOH . 
NA 7 HOH D 2 502 410 HOH HOH . 
NA 7 HOH D 3 503 540 HOH HOH . 
NA 7 HOH D 4 504 539 HOH HOH . 
NA 7 HOH D 5 505 559 HOH HOH . 
NA 7 HOH D 6 506 566 HOH HOH . 
NA 7 HOH D 7 507 501 HOH HOH . 
OA 7 HOH E 1 501 413 HOH HOH . 
OA 7 HOH E 2 502 560 HOH HOH . 
OA 7 HOH E 3 503 510 HOH HOH . 
OA 7 HOH E 4 504 411 HOH HOH . 
OA 7 HOH E 5 505 577 HOH HOH . 
OA 7 HOH E 6 506 501 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PLC . . . V 6 49.441 -57.223 38.29 1 140.51 ? C1 PLC 401 C 1 
HETATM 2 C C2 PLC . . . V 6 50.555 -56.911 39.258 1 132.21 ? C2 PLC 401 C 1 
HETATM 3 C C3 PLC . . . V 6 50.113 -57.018 40.693 1 125.44 ? C3 PLC 401 C 1 
HETATM 4 C C4 PLC . . . V 6 46.549 -60.308 37.611 1 157.8 ? C4 PLC 401 C 1 
HETATM 5 C C5 PLC . . . V 6 46.455 -61.573 38.448 1 156.85 ? C5 PLC 401 C 1 
HETATM 6 C C6 PLC . . . V 6 45.195 -63.391 39.509 1 157.61 ? C6 PLC 401 C 1 
HETATM 7 C C7 PLC . . . V 6 44.313 -61.141 39.688 1 154.06 ? C7 PLC 401 C 1 
HETATM 8 C C8 PLC . . . V 6 44.213 -62.321 37.556 1 155.9 ? C8 PLC 401 C 1 
HETATM 9 C C' PLC . . . V 6 52.906 -57.089 38.668 1 125.78 ? C' PLC 401 C 1 
HETATM 10 C C1' PLC . . . V 6 54.129 -57.589 39.401 1 118.59 ? C1' PLC 401 C 1 
HETATM 11 C C2' PLC . . . V 6 55.421 -56.793 39.196 1 108.96 ? C2' PLC 401 C 1 
HETATM 12 C C3' PLC . . . V 6 55.421 -55.424 39.855 1 99.92 ? C3' PLC 401 C 1 
HETATM 13 C C4' PLC . . . V 6 56.187 -55.361 41.155 1 96.25 ? C4' PLC 401 C 1 
HETATM 14 C C5' PLC . . . V 6 56.511 -53.953 41.632 1 95.25 ? C5' PLC 401 C 1 
HETATM 15 C C6' PLC . . . V 6 57.121 -53.919 43.035 1 95.43 ? C6' PLC 401 C 1 
HETATM 16 C C7' PLC . . . V 6 57.839 -52.629 43.432 1 91.38 ? C7' PLC 401 C 1 
HETATM 17 C CB PLC . . . V 6 51.394 -55.883 42.377 1 110.59 ? CB PLC 401 C 1 
HETATM 18 C C1B PLC . . . V 6 52.454 -54.828 42.315 1 102.14 ? C1B PLC 401 C 1 
HETATM 19 C C2B PLC . . . V 6 53.382 -54.757 43.51 1 95.55 ? C2B PLC 401 C 1 
HETATM 20 C C3B PLC . . . V 6 52.935 -53.735 44.527 1 90.59 ? C3B PLC 401 C 1 
HETATM 21 C C4B PLC . . . V 6 54.009 -52.742 44.927 1 86.14 ? C4B PLC 401 C 1 
HETATM 22 C C5B PLC . . . V 6 54.043 -52.473 46.422 1 82.96 ? C5B PLC 401 C 1 
HETATM 23 C C6B PLC . . . V 6 54.695 -51.157 46.807 1 78.63 ? C6B PLC 401 C 1 
HETATM 24 C C7B PLC . . . V 6 54.775 -50.948 48.305 1 76.75 ? C7B PLC 401 C 1 
HETATM 25 O O' PLC . . . V 6 52.911 -56.247 37.802 1 125.72 ? O' PLC 401 C 1 
HETATM 26 O OB PLC . . . V 6 51.282 -56.71 43.241 1 111.8 ? OB PLC 401 C 1 
HETATM 27 O O2 PLC . . . V 6 51.786 -57.698 39.122 1 130.77 ? O2 PLC 401 C 1 
HETATM 28 O O3 PLC . . . V 6 50.598 -55.8 41.304 1 118.28 ? O3 PLC 401 C 1 
HETATM 29 O O1P PLC . . . V 6 47.569 -57.854 36.012 1 157.83 ? O1P PLC 401 C 1 
HETATM 30 O O2P PLC . . . V 6 48.856 -59.926 35.676 1 160.32 ? O2P PLC 401 C 1 
HETATM 31 O O3P PLC . . . V 6 49.824 -58.175 37.273 1 150.15 ? O3P PLC 401 C 1 
HETATM 32 O O4P PLC . . . V 6 47.758 -59.597 37.986 1 158.87 ? O4P PLC 401 C 1 
HETATM 33 N N PLC . . . V 6 45.041 -62.089 38.786 1 155.93 ? N PLC 401 C 1 
HETATM 34 P P PLC . . . V 6 48.442 -58.843 36.696 1 158.47 ? P PLC 401 C 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    42 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           34 
#