data_6F0J # _model_server_result.job_id iBSdLAVVhN2pF47vwtrWlg _model_server_result.datetime_utc '2024-11-14 05:47:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6f0j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":401}' # _entry.id 6F0J # _exptl.entry_id 6F0J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 622.834 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIUNDECYL PHOSPHATIDYL CHOLINE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.14 _cell.angle_gamma 90 _cell.entry_id 6F0J _cell.length_a 181.01 _cell.length_b 133.11 _cell.length_c 159.85 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6F0J _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 P N N ? 6 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ILE 71 A ILE 71 1_555 J NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc2 B O PRO 68 B PRO 68 1_555 R NA NA . B NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.116 ? metalc ? metalc3 B O ILE 71 B ILE 71 1_555 R NA NA . B NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? metalc ? metalc4 C O PRO 68 C PRO 68 1_555 X NA NA . C NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? metalc ? metalc5 C O ILE 71 C ILE 71 1_555 X NA NA . C NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc6 D O ILE 71 D ILE 71 1_555 CA NA NA . D NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc7 E O PRO 68 E PRO 68 1_555 HA NA NA . E NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc8 E O ILE 71 E ILE 71 1_555 HA NA NA . E NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? # _chem_comp.formula 'C32 H65 N O8 P 1' _chem_comp.formula_weight 622.834 _chem_comp.id PLC _chem_comp.mon_nstd_flag . _chem_comp.name 'DIUNDECYL PHOSPHATIDYL CHOLINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PLC sing 348 n n C1 O3P PLC sing 349 n n C1 H11 PLC sing 350 n n C1 H12 PLC sing 351 n n C2 C3 PLC sing 352 n n C2 O2 PLC sing 353 n n C2 H2 PLC sing 354 n n C3 O3 PLC sing 355 n n C3 H31 PLC sing 356 n n C3 H32 PLC sing 357 n n C4 C5 PLC sing 358 n n C4 O4P PLC sing 359 n n C4 H41 PLC sing 360 n n C4 H42 PLC sing 361 n n C5 N PLC sing 362 n n C5 H51 PLC sing 363 n n C5 H52 PLC sing 364 n n C6 N PLC sing 365 n n C6 H61 PLC sing 366 n n C6 H62 PLC sing 367 n n C6 H63 PLC sing 368 n n C7 N PLC sing 369 n n C7 H71 PLC sing 370 n n C7 H72 PLC sing 371 n n C7 H73 PLC sing 372 n n C8 N PLC sing 373 n n C8 H81 PLC sing 374 n n C8 H82 PLC sing 375 n n C8 H83 PLC sing 376 n n C' C1' PLC sing 377 n n C' O' PLC doub 378 n n C' O2 PLC sing 379 n n C1' C2' PLC sing 380 n n C1' "H1'1" PLC sing 381 n n C1' "H1'2" PLC sing 382 n n C2' C3' PLC sing 383 n n C2' "H2'1" PLC sing 384 n n C2' "H2'2" PLC sing 385 n n C3' C4' PLC sing 386 n n C3' "H3'1" PLC sing 387 n n C3' "H3'2" PLC sing 388 n n C4' C5' PLC sing 389 n n C4' "H4'1" PLC sing 390 n n C4' "H4'2" PLC sing 391 n n C5' C6' PLC sing 392 n n C5' "H5'1" PLC sing 393 n n C5' "H5'2" PLC sing 394 n n C6' C7' PLC sing 395 n n C6' "H6'1" PLC sing 396 n n C6' "H6'2" PLC sing 397 n n C7' C8' PLC sing 398 n n C7' "H7'1" PLC sing 399 n n C7' "H7'2" PLC sing 400 n n C8' C9' PLC sing 401 n n C8' "H8'1" PLC sing 402 n n C8' "H8'2" PLC sing 403 n n C9' CA' PLC sing 404 n n C9' "H9'1" PLC sing 405 n n C9' "H9'2" PLC sing 406 n n CA' CB' PLC sing 407 n n CA' "HT'1" PLC sing 408 n n CA' "HT'2" PLC sing 409 n n CB' "HE'1" PLC sing 410 n n CB' "HE'2" PLC sing 411 n n CB' "HE'3" PLC sing 412 n n CB C1B PLC sing 413 n n CB OB PLC doub 414 n n CB O3 PLC sing 415 n n C1B C2B PLC sing 416 n n C1B H1A1 PLC sing 417 n n C1B H1A2 PLC sing 418 n n C2B C3B PLC sing 419 n n C2B H2A1 PLC sing 420 n n C2B H2A2 PLC sing 421 n n C3B C4B PLC sing 422 n n C3B H3A1 PLC sing 423 n n C3B H3A2 PLC sing 424 n n C4B C5B PLC sing 425 n n C4B H4A1 PLC sing 426 n n C4B H4A2 PLC sing 427 n n C5B C6B PLC sing 428 n n C5B H5A1 PLC sing 429 n n C5B H5A2 PLC sing 430 n n C6B C7B PLC sing 431 n n C6B H6A1 PLC sing 432 n n C6B H6A2 PLC sing 433 n n C7B C8B PLC sing 434 n n C7B H7A1 PLC sing 435 n n C7B H7A2 PLC sing 436 n n C8B C9B PLC sing 437 n n C8B H8A1 PLC sing 438 n n C8B H8A2 PLC sing 439 n n C9B CAA PLC sing 440 n n C9B H9A1 PLC sing 441 n n C9B H9A2 PLC sing 442 n n CAA CBA PLC sing 443 n n CAA HTA1 PLC sing 444 n n CAA HTA2 PLC sing 445 n n CBA HEA1 PLC sing 446 n n CBA HEA2 PLC sing 447 n n CBA HEA3 PLC sing 448 n n O1P P PLC doub 449 n n O2P P PLC sing 450 n n O2P HOP2 PLC sing 451 n n O3P P PLC sing 452 n n O4P P PLC sing 453 n n # _atom_sites.entry_id 6F0J _atom_sites.fract_transf_matrix[1][1] 0.005525 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001188 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007513 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006399 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 ACT A 1 401 401 ACT ACT . G 3 CL A 1 402 405 CL CL . H 3 CL A 1 403 406 CL CL . I 3 CL A 1 404 407 CL CL . J 4 NA A 1 405 408 NA NA . K 4 NA A 1 406 409 NA NA . L 2 ACT A 1 407 410 ACT ACT . M 5 LMT A 1 408 411 LMT LMT . N 5 LMT A 1 409 412 LMT LMT . O 2 ACT B 1 401 401 ACT ACT . P 6 PLC B 1 402 403 PLC PLC . Q 3 CL B 1 403 405 CL CL . R 4 NA B 1 404 406 NA NA . S 2 ACT B 1 405 407 ACT ACT . T 5 LMT B 1 406 408 LMT LMT . U 2 ACT B 1 407 401 ACT ACT . V 6 PLC C 1 401 402 PLC PLC . W 3 CL C 1 402 405 CL CL . X 4 NA C 1 403 406 NA NA . Y 2 ACT C 1 404 407 ACT ACT . Z 5 LMT C 1 405 408 LMT LMT . AA 2 ACT C 1 406 401 ACT ACT . BA 3 CL D 1 401 405 CL CL . CA 4 NA D 1 402 406 NA NA . DA 2 ACT D 1 403 407 ACT ACT . EA 5 LMT D 1 404 408 LMT LMT . FA 2 ACT E 1 401 401 ACT ACT . GA 3 CL E 1 402 405 CL CL . HA 4 NA E 1 403 406 NA NA . IA 2 ACT E 1 404 407 ACT ACT . JA 5 LMT E 1 405 408 LMT LMT . KA 7 HOH A 1 501 414 HOH HOH . KA 7 HOH A 2 502 572 HOH HOH . KA 7 HOH A 3 503 565 HOH HOH . KA 7 HOH A 4 504 579 HOH HOH . KA 7 HOH A 5 505 501 HOH HOH . KA 7 HOH A 6 506 503 HOH HOH . KA 7 HOH A 7 507 501 HOH HOH . LA 7 HOH B 1 501 566 HOH HOH . LA 7 HOH B 2 502 559 HOH HOH . LA 7 HOH B 3 503 528 HOH HOH . LA 7 HOH B 4 504 622 HOH HOH . LA 7 HOH B 5 505 560 HOH HOH . LA 7 HOH B 6 506 562 HOH HOH . LA 7 HOH B 7 507 504 HOH HOH . LA 7 HOH B 8 508 412 HOH HOH . LA 7 HOH B 9 509 512 HOH HOH . MA 7 HOH C 1 501 510 HOH HOH . MA 7 HOH C 2 502 409 HOH HOH . MA 7 HOH C 3 503 551 HOH HOH . MA 7 HOH C 4 504 550 HOH HOH . MA 7 HOH C 5 505 549 HOH HOH . MA 7 HOH C 6 506 521 HOH HOH . MA 7 HOH C 7 507 501 HOH HOH . NA 7 HOH D 1 501 526 HOH HOH . NA 7 HOH D 2 502 410 HOH HOH . NA 7 HOH D 3 503 540 HOH HOH . NA 7 HOH D 4 504 539 HOH HOH . NA 7 HOH D 5 505 559 HOH HOH . NA 7 HOH D 6 506 566 HOH HOH . NA 7 HOH D 7 507 501 HOH HOH . OA 7 HOH E 1 501 413 HOH HOH . OA 7 HOH E 2 502 560 HOH HOH . OA 7 HOH E 3 503 510 HOH HOH . OA 7 HOH E 4 504 411 HOH HOH . OA 7 HOH E 5 505 577 HOH HOH . OA 7 HOH E 6 506 501 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLC . . . V 6 49.441 -57.223 38.29 1 140.51 ? C1 PLC 401 C 1 HETATM 2 C C2 PLC . . . V 6 50.555 -56.911 39.258 1 132.21 ? C2 PLC 401 C 1 HETATM 3 C C3 PLC . . . V 6 50.113 -57.018 40.693 1 125.44 ? C3 PLC 401 C 1 HETATM 4 C C4 PLC . . . V 6 46.549 -60.308 37.611 1 157.8 ? C4 PLC 401 C 1 HETATM 5 C C5 PLC . . . V 6 46.455 -61.573 38.448 1 156.85 ? C5 PLC 401 C 1 HETATM 6 C C6 PLC . . . V 6 45.195 -63.391 39.509 1 157.61 ? C6 PLC 401 C 1 HETATM 7 C C7 PLC . . . V 6 44.313 -61.141 39.688 1 154.06 ? C7 PLC 401 C 1 HETATM 8 C C8 PLC . . . V 6 44.213 -62.321 37.556 1 155.9 ? C8 PLC 401 C 1 HETATM 9 C C' PLC . . . V 6 52.906 -57.089 38.668 1 125.78 ? C' PLC 401 C 1 HETATM 10 C C1' PLC . . . V 6 54.129 -57.589 39.401 1 118.59 ? C1' PLC 401 C 1 HETATM 11 C C2' PLC . . . V 6 55.421 -56.793 39.196 1 108.96 ? C2' PLC 401 C 1 HETATM 12 C C3' PLC . . . V 6 55.421 -55.424 39.855 1 99.92 ? C3' PLC 401 C 1 HETATM 13 C C4' PLC . . . V 6 56.187 -55.361 41.155 1 96.25 ? C4' PLC 401 C 1 HETATM 14 C C5' PLC . . . V 6 56.511 -53.953 41.632 1 95.25 ? C5' PLC 401 C 1 HETATM 15 C C6' PLC . . . V 6 57.121 -53.919 43.035 1 95.43 ? C6' PLC 401 C 1 HETATM 16 C C7' PLC . . . V 6 57.839 -52.629 43.432 1 91.38 ? C7' PLC 401 C 1 HETATM 17 C CB PLC . . . V 6 51.394 -55.883 42.377 1 110.59 ? CB PLC 401 C 1 HETATM 18 C C1B PLC . . . V 6 52.454 -54.828 42.315 1 102.14 ? C1B PLC 401 C 1 HETATM 19 C C2B PLC . . . V 6 53.382 -54.757 43.51 1 95.55 ? C2B PLC 401 C 1 HETATM 20 C C3B PLC . . . V 6 52.935 -53.735 44.527 1 90.59 ? C3B PLC 401 C 1 HETATM 21 C C4B PLC . . . V 6 54.009 -52.742 44.927 1 86.14 ? C4B PLC 401 C 1 HETATM 22 C C5B PLC . . . V 6 54.043 -52.473 46.422 1 82.96 ? C5B PLC 401 C 1 HETATM 23 C C6B PLC . . . V 6 54.695 -51.157 46.807 1 78.63 ? C6B PLC 401 C 1 HETATM 24 C C7B PLC . . . V 6 54.775 -50.948 48.305 1 76.75 ? C7B PLC 401 C 1 HETATM 25 O O' PLC . . . V 6 52.911 -56.247 37.802 1 125.72 ? O' PLC 401 C 1 HETATM 26 O OB PLC . . . V 6 51.282 -56.71 43.241 1 111.8 ? OB PLC 401 C 1 HETATM 27 O O2 PLC . . . V 6 51.786 -57.698 39.122 1 130.77 ? O2 PLC 401 C 1 HETATM 28 O O3 PLC . . . V 6 50.598 -55.8 41.304 1 118.28 ? O3 PLC 401 C 1 HETATM 29 O O1P PLC . . . V 6 47.569 -57.854 36.012 1 157.83 ? O1P PLC 401 C 1 HETATM 30 O O2P PLC . . . V 6 48.856 -59.926 35.676 1 160.32 ? O2P PLC 401 C 1 HETATM 31 O O3P PLC . . . V 6 49.824 -58.175 37.273 1 150.15 ? O3P PLC 401 C 1 HETATM 32 O O4P PLC . . . V 6 47.758 -59.597 37.986 1 158.87 ? O4P PLC 401 C 1 HETATM 33 N N PLC . . . V 6 45.041 -62.089 38.786 1 155.93 ? N PLC 401 C 1 HETATM 34 P P PLC . . . V 6 48.442 -58.843 36.696 1 158.47 ? P PLC 401 C 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 34 #