data_6F0J # _model_server_result.job_id iWuWgmYfalIvHeaiLyLjCg _model_server_result.datetime_utc '2024-11-14 05:43:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6f0j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HA","auth_seq_id":403}' # _entry.id 6F0J # _exptl.entry_id 6F0J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.14 _cell.angle_gamma 90 _cell.entry_id 6F0J _cell.length_a 181.01 _cell.length_b 133.11 _cell.length_c 159.85 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6F0J _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 R N N ? 4 X N N ? 4 CA N N ? 4 HA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ILE 71 A ILE 71 1_555 J NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc2 B O PRO 68 B PRO 68 1_555 R NA NA . B NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.116 ? metalc ? metalc3 B O ILE 71 B ILE 71 1_555 R NA NA . B NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? metalc ? metalc4 C O PRO 68 C PRO 68 1_555 X NA NA . C NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? metalc ? metalc5 C O ILE 71 C ILE 71 1_555 X NA NA . C NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc6 D O ILE 71 D ILE 71 1_555 CA NA NA . D NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc7 E O PRO 68 E PRO 68 1_555 HA NA NA . E NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc8 E O ILE 71 E ILE 71 1_555 HA NA NA . E NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6F0J _atom_sites.fract_transf_matrix[1][1] 0.005525 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001188 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007513 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006399 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 ACT A 1 401 401 ACT ACT . G 3 CL A 1 402 405 CL CL . H 3 CL A 1 403 406 CL CL . I 3 CL A 1 404 407 CL CL . J 4 NA A 1 405 408 NA NA . K 4 NA A 1 406 409 NA NA . L 2 ACT A 1 407 410 ACT ACT . M 5 LMT A 1 408 411 LMT LMT . N 5 LMT A 1 409 412 LMT LMT . O 2 ACT B 1 401 401 ACT ACT . P 6 PLC B 1 402 403 PLC PLC . Q 3 CL B 1 403 405 CL CL . R 4 NA B 1 404 406 NA NA . S 2 ACT B 1 405 407 ACT ACT . T 5 LMT B 1 406 408 LMT LMT . U 2 ACT B 1 407 401 ACT ACT . V 6 PLC C 1 401 402 PLC PLC . W 3 CL C 1 402 405 CL CL . X 4 NA C 1 403 406 NA NA . Y 2 ACT C 1 404 407 ACT ACT . Z 5 LMT C 1 405 408 LMT LMT . AA 2 ACT C 1 406 401 ACT ACT . BA 3 CL D 1 401 405 CL CL . CA 4 NA D 1 402 406 NA NA . DA 2 ACT D 1 403 407 ACT ACT . EA 5 LMT D 1 404 408 LMT LMT . FA 2 ACT E 1 401 401 ACT ACT . GA 3 CL E 1 402 405 CL CL . HA 4 NA E 1 403 406 NA NA . IA 2 ACT E 1 404 407 ACT ACT . JA 5 LMT E 1 405 408 LMT LMT . KA 7 HOH A 1 501 414 HOH HOH . KA 7 HOH A 2 502 572 HOH HOH . KA 7 HOH A 3 503 565 HOH HOH . KA 7 HOH A 4 504 579 HOH HOH . KA 7 HOH A 5 505 501 HOH HOH . KA 7 HOH A 6 506 503 HOH HOH . KA 7 HOH A 7 507 501 HOH HOH . LA 7 HOH B 1 501 566 HOH HOH . LA 7 HOH B 2 502 559 HOH HOH . LA 7 HOH B 3 503 528 HOH HOH . LA 7 HOH B 4 504 622 HOH HOH . LA 7 HOH B 5 505 560 HOH HOH . LA 7 HOH B 6 506 562 HOH HOH . LA 7 HOH B 7 507 504 HOH HOH . LA 7 HOH B 8 508 412 HOH HOH . LA 7 HOH B 9 509 512 HOH HOH . MA 7 HOH C 1 501 510 HOH HOH . MA 7 HOH C 2 502 409 HOH HOH . MA 7 HOH C 3 503 551 HOH HOH . MA 7 HOH C 4 504 550 HOH HOH . MA 7 HOH C 5 505 549 HOH HOH . MA 7 HOH C 6 506 521 HOH HOH . MA 7 HOH C 7 507 501 HOH HOH . NA 7 HOH D 1 501 526 HOH HOH . NA 7 HOH D 2 502 410 HOH HOH . NA 7 HOH D 3 503 540 HOH HOH . NA 7 HOH D 4 504 539 HOH HOH . NA 7 HOH D 5 505 559 HOH HOH . NA 7 HOH D 6 506 566 HOH HOH . NA 7 HOH D 7 507 501 HOH HOH . OA 7 HOH E 1 501 413 HOH HOH . OA 7 HOH E 2 502 560 HOH HOH . OA 7 HOH E 3 503 510 HOH HOH . OA 7 HOH E 4 504 411 HOH HOH . OA 7 HOH E 5 505 577 HOH HOH . OA 7 HOH E 6 506 501 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id HA _atom_site.label_entity_id 4 _atom_site.Cartn_x 42.254 _atom_site.Cartn_y -17.386 _atom_site.Cartn_z -10.711 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 84.54 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 1 #