data_6F0M # _model_server_result.job_id 0aBcdDQ0EVQKzkI3K0BY2A _model_server_result.datetime_utc '2024-11-27 11:13:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6f0m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CA","auth_seq_id":401}' # _entry.id 6F0M # _exptl.entry_id 6F0M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.51 _cell.angle_gamma 90 _cell.entry_id 6F0M _cell.length_a 182.25 _cell.length_b 133.45 _cell.length_c 160.57 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6F0M _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 S N N ? 4 Z N N ? 4 CA N N ? 4 HA N N ? 4 PA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PRO 68 A PRO 68 1_555 K NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc2 A O ILE 71 A ILE 71 1_555 K NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc3 B O ILE 71 B ILE 71 1_555 S NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? metalc ? metalc4 C O PRO 68 C PRO 68 1_555 Z NA NA . C NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.117 ? metalc ? metalc5 C O ILE 71 C ILE 71 1_555 Z NA NA . C NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc6 D O PRO 68 D PRO 68 1_555 HA NA NA . D NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc7 D O ILE 71 D ILE 71 1_555 HA NA NA . D NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc8 E O PRO 68 E PRO 68 1_555 PA NA NA . E NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? metalc ? metalc9 E O ILE 71 E ILE 71 1_555 PA NA NA . E NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6F0M _atom_sites.fract_transf_matrix[1][1] 0.005487 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001217 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007493 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006379 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 PLC A 1 401 402 PLC PLC . G 2 PLC A 1 402 403 PLC PLC . H 3 CL A 1 403 405 CL CL . I 3 CL A 1 404 406 CL CL . J 3 CL A 1 405 407 CL CL . K 4 NA A 1 406 408 NA NA . L 5 ACT A 1 407 410 ACT ACT . M 6 LMT A 1 408 411 LMT LMT . N 6 LMT A 1 409 412 LMT LMT . O 5 ACT B 1 401 401 ACT ACT . P 2 PLC B 1 402 402 PLC PLC . Q 2 PLC B 1 403 403 PLC PLC . R 3 CL B 1 404 405 CL CL . S 4 NA B 1 405 406 NA NA . T 5 ACT B 1 406 407 ACT ACT . U 6 LMT B 1 407 408 LMT LMT . V 5 ACT B 1 408 401 ACT ACT . W 2 PLC C 1 401 402 PLC PLC . X 2 PLC C 1 402 403 PLC PLC . Y 3 CL C 1 403 405 CL CL . Z 4 NA C 1 404 406 NA NA . AA 5 ACT C 1 405 407 ACT ACT . BA 6 LMT C 1 406 408 LMT LMT . CA 4 NA D 1 401 409 NA NA . DA 5 ACT D 1 402 401 ACT ACT . EA 2 PLC D 1 403 402 PLC PLC . FA 2 PLC D 1 404 403 PLC PLC . GA 3 CL D 1 405 405 CL CL . HA 4 NA D 1 406 406 NA NA . IA 5 ACT D 1 407 407 ACT ACT . JA 6 LMT D 1 408 408 LMT LMT . KA 5 ACT E 1 401 401 ACT ACT . LA 5 ACT E 1 402 401 ACT ACT . MA 2 PLC E 1 403 402 PLC PLC . NA 2 PLC E 1 404 403 PLC PLC . OA 3 CL E 1 405 405 CL CL . PA 4 NA E 1 406 406 NA NA . QA 5 ACT E 1 407 407 ACT ACT . RA 6 LMT E 1 408 408 LMT LMT . SA 7 HOH A 1 501 173 HOH HOH . SA 7 HOH A 2 502 188 HOH HOH . SA 7 HOH A 3 503 102 HOH HOH . SA 7 HOH A 4 504 23 HOH HOH . SA 7 HOH A 5 505 180 HOH HOH . SA 7 HOH A 6 506 140 HOH HOH . SA 7 HOH A 7 507 145 HOH HOH . SA 7 HOH A 8 508 156 HOH HOH . SA 7 HOH A 9 509 94 HOH HOH . SA 7 HOH A 10 510 203 HOH HOH . SA 7 HOH A 11 511 24 HOH HOH . SA 7 HOH A 12 512 147 HOH HOH . SA 7 HOH A 13 513 8 HOH HOH . SA 7 HOH A 14 514 572 HOH HOH . SA 7 HOH A 15 515 80 HOH HOH . SA 7 HOH A 16 516 414 HOH HOH . SA 7 HOH A 17 517 10 HOH HOH . SA 7 HOH A 18 518 123 HOH HOH . SA 7 HOH A 19 519 53 HOH HOH . SA 7 HOH A 20 520 62 HOH HOH . SA 7 HOH A 21 521 579 HOH HOH . SA 7 HOH A 22 522 45 HOH HOH . SA 7 HOH A 23 523 116 HOH HOH . SA 7 HOH A 24 524 49 HOH HOH . SA 7 HOH A 25 525 38 HOH HOH . SA 7 HOH A 26 526 171 HOH HOH . SA 7 HOH A 27 527 565 HOH HOH . SA 7 HOH A 28 528 501 HOH HOH . SA 7 HOH A 29 529 503 HOH HOH . TA 7 HOH B 1 501 162 HOH HOH . TA 7 HOH B 2 502 566 HOH HOH . TA 7 HOH B 3 503 30 HOH HOH . TA 7 HOH B 4 504 26 HOH HOH . TA 7 HOH B 5 505 16 HOH HOH . TA 7 HOH B 6 506 19 HOH HOH . TA 7 HOH B 7 507 559 HOH HOH . TA 7 HOH B 8 508 161 HOH HOH . TA 7 HOH B 9 509 166 HOH HOH . TA 7 HOH B 10 510 14 HOH HOH . TA 7 HOH B 11 511 146 HOH HOH . TA 7 HOH B 12 512 183 HOH HOH . TA 7 HOH B 13 513 528 HOH HOH . TA 7 HOH B 14 514 97 HOH HOH . TA 7 HOH B 15 515 560 HOH HOH . TA 7 HOH B 16 516 197 HOH HOH . TA 7 HOH B 17 517 186 HOH HOH . TA 7 HOH B 18 518 33 HOH HOH . TA 7 HOH B 19 519 117 HOH HOH . TA 7 HOH B 20 520 152 HOH HOH . TA 7 HOH B 21 521 512 HOH HOH . TA 7 HOH B 22 522 20 HOH HOH . TA 7 HOH B 23 523 28 HOH HOH . TA 7 HOH B 24 524 136 HOH HOH . TA 7 HOH B 25 525 501 HOH HOH . TA 7 HOH B 26 526 71 HOH HOH . TA 7 HOH B 27 527 194 HOH HOH . UA 7 HOH C 1 501 163 HOH HOH . UA 7 HOH C 2 502 177 HOH HOH . UA 7 HOH C 3 503 132 HOH HOH . UA 7 HOH C 4 504 164 HOH HOH . UA 7 HOH C 5 505 551 HOH HOH . UA 7 HOH C 6 506 510 HOH HOH . UA 7 HOH C 7 507 72 HOH HOH . UA 7 HOH C 8 508 70 HOH HOH . UA 7 HOH C 9 509 104 HOH HOH . UA 7 HOH C 10 510 21 HOH HOH . UA 7 HOH C 11 511 128 HOH HOH . UA 7 HOH C 12 512 68 HOH HOH . UA 7 HOH C 13 513 178 HOH HOH . UA 7 HOH C 14 514 22 HOH HOH . UA 7 HOH C 15 515 35 HOH HOH . UA 7 HOH C 16 516 549 HOH HOH . UA 7 HOH C 17 517 88 HOH HOH . UA 7 HOH C 18 518 550 HOH HOH . UA 7 HOH C 19 519 2 HOH HOH . UA 7 HOH C 20 520 54 HOH HOH . UA 7 HOH C 21 521 139 HOH HOH . UA 7 HOH C 22 522 137 HOH HOH . UA 7 HOH C 23 523 64 HOH HOH . UA 7 HOH C 24 524 521 HOH HOH . UA 7 HOH C 25 525 34 HOH HOH . UA 7 HOH C 26 526 95 HOH HOH . UA 7 HOH C 27 527 175 HOH HOH . UA 7 HOH C 28 528 501 HOH HOH . VA 7 HOH D 1 501 11 HOH HOH . VA 7 HOH D 2 502 59 HOH HOH . VA 7 HOH D 3 503 110 HOH HOH . VA 7 HOH D 4 504 130 HOH HOH . VA 7 HOH D 5 505 86 HOH HOH . VA 7 HOH D 6 506 539 HOH HOH . VA 7 HOH D 7 507 201 HOH HOH . VA 7 HOH D 8 508 410 HOH HOH . VA 7 HOH D 9 509 131 HOH HOH . VA 7 HOH D 10 510 142 HOH HOH . VA 7 HOH D 11 511 17 HOH HOH . VA 7 HOH D 12 512 192 HOH HOH . VA 7 HOH D 13 513 100 HOH HOH . VA 7 HOH D 14 514 40 HOH HOH . VA 7 HOH D 15 515 109 HOH HOH . VA 7 HOH D 16 516 540 HOH HOH . VA 7 HOH D 17 517 113 HOH HOH . VA 7 HOH D 18 518 148 HOH HOH . VA 7 HOH D 19 519 559 HOH HOH . VA 7 HOH D 20 520 15 HOH HOH . VA 7 HOH D 21 521 58 HOH HOH . VA 7 HOH D 22 522 93 HOH HOH . VA 7 HOH D 23 523 37 HOH HOH . VA 7 HOH D 24 524 3 HOH HOH . VA 7 HOH D 25 525 501 HOH HOH . VA 7 HOH D 26 526 32 HOH HOH . VA 7 HOH D 27 527 51 HOH HOH . VA 7 HOH D 28 528 501 HOH HOH . WA 7 HOH E 1 501 176 HOH HOH . WA 7 HOH E 2 502 155 HOH HOH . WA 7 HOH E 3 503 190 HOH HOH . WA 7 HOH E 4 504 144 HOH HOH . WA 7 HOH E 5 505 174 HOH HOH . WA 7 HOH E 6 506 6 HOH HOH . WA 7 HOH E 7 507 4 HOH HOH . WA 7 HOH E 8 508 18 HOH HOH . WA 7 HOH E 9 509 170 HOH HOH . WA 7 HOH E 10 510 1 HOH HOH . WA 7 HOH E 11 511 57 HOH HOH . WA 7 HOH E 12 512 84 HOH HOH . WA 7 HOH E 13 513 29 HOH HOH . WA 7 HOH E 14 514 193 HOH HOH . WA 7 HOH E 15 515 12 HOH HOH . WA 7 HOH E 16 516 413 HOH HOH . WA 7 HOH E 17 517 65 HOH HOH . WA 7 HOH E 18 518 31 HOH HOH . WA 7 HOH E 19 519 167 HOH HOH . WA 7 HOH E 20 520 510 HOH HOH . WA 7 HOH E 21 521 46 HOH HOH . WA 7 HOH E 22 522 99 HOH HOH . WA 7 HOH E 23 523 206 HOH HOH . WA 7 HOH E 24 524 207 HOH HOH . WA 7 HOH E 25 525 127 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id CA _atom_site.label_entity_id 4 _atom_site.Cartn_x 65.545 _atom_site.Cartn_y -27.388 _atom_site.Cartn_z 60.867 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 107.22 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #