data_6F0R # _model_server_result.job_id MUMSPrGBiKQdhM-tRGW60g _model_server_result.datetime_utc '2024-11-23 19:16:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6f0r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CA","auth_seq_id":402}' # _entry.id 6F0R # _exptl.entry_id 6F0R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 622.834 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIUNDECYL PHOSPHATIDYL CHOLINE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.27 _cell.angle_gamma 90 _cell.entry_id 6F0R _cell.length_a 180.84 _cell.length_b 132.42 _cell.length_c 160.06 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6F0R _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 N N N ? 3 U N N ? 3 Y N N ? 3 CA N N # _chem_comp.formula 'C32 H65 N O8 P 1' _chem_comp.formula_weight 622.834 _chem_comp.id PLC _chem_comp.mon_nstd_flag . _chem_comp.name 'DIUNDECYL PHOSPHATIDYL CHOLINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PLC sing 348 n n C1 O3P PLC sing 349 n n C1 H11 PLC sing 350 n n C1 H12 PLC sing 351 n n C2 C3 PLC sing 352 n n C2 O2 PLC sing 353 n n C2 H2 PLC sing 354 n n C3 O3 PLC sing 355 n n C3 H31 PLC sing 356 n n C3 H32 PLC sing 357 n n C4 C5 PLC sing 358 n n C4 O4P PLC sing 359 n n C4 H41 PLC sing 360 n n C4 H42 PLC sing 361 n n C5 N PLC sing 362 n n C5 H51 PLC sing 363 n n C5 H52 PLC sing 364 n n C6 N PLC sing 365 n n C6 H61 PLC sing 366 n n C6 H62 PLC sing 367 n n C6 H63 PLC sing 368 n n C7 N PLC sing 369 n n C7 H71 PLC sing 370 n n C7 H72 PLC sing 371 n n C7 H73 PLC sing 372 n n C8 N PLC sing 373 n n C8 H81 PLC sing 374 n n C8 H82 PLC sing 375 n n C8 H83 PLC sing 376 n n C' C1' PLC sing 377 n n C' O' PLC doub 378 n n C' O2 PLC sing 379 n n C1' C2' PLC sing 380 n n C1' "H1'1" PLC sing 381 n n C1' "H1'2" PLC sing 382 n n C2' C3' PLC sing 383 n n C2' "H2'1" PLC sing 384 n n C2' "H2'2" PLC sing 385 n n C3' C4' PLC sing 386 n n C3' "H3'1" PLC sing 387 n n C3' "H3'2" PLC sing 388 n n C4' C5' PLC sing 389 n n C4' "H4'1" PLC sing 390 n n C4' "H4'2" PLC sing 391 n n C5' C6' PLC sing 392 n n C5' "H5'1" PLC sing 393 n n C5' "H5'2" PLC sing 394 n n C6' C7' PLC sing 395 n n C6' "H6'1" PLC sing 396 n n C6' "H6'2" PLC sing 397 n n C7' C8' PLC sing 398 n n C7' "H7'1" PLC sing 399 n n C7' "H7'2" PLC sing 400 n n C8' C9' PLC sing 401 n n C8' "H8'1" PLC sing 402 n n C8' "H8'2" PLC sing 403 n n C9' CA' PLC sing 404 n n C9' "H9'1" PLC sing 405 n n C9' "H9'2" PLC sing 406 n n CA' CB' PLC sing 407 n n CA' "HT'1" PLC sing 408 n n CA' "HT'2" PLC sing 409 n n CB' "HE'1" PLC sing 410 n n CB' "HE'2" PLC sing 411 n n CB' "HE'3" PLC sing 412 n n CB C1B PLC sing 413 n n CB OB PLC doub 414 n n CB O3 PLC sing 415 n n C1B C2B PLC sing 416 n n C1B H1A1 PLC sing 417 n n C1B H1A2 PLC sing 418 n n C2B C3B PLC sing 419 n n C2B H2A1 PLC sing 420 n n C2B H2A2 PLC sing 421 n n C3B C4B PLC sing 422 n n C3B H3A1 PLC sing 423 n n C3B H3A2 PLC sing 424 n n C4B C5B PLC sing 425 n n C4B H4A1 PLC sing 426 n n C4B H4A2 PLC sing 427 n n C5B C6B PLC sing 428 n n C5B H5A1 PLC sing 429 n n C5B H5A2 PLC sing 430 n n C6B C7B PLC sing 431 n n C6B H6A1 PLC sing 432 n n C6B H6A2 PLC sing 433 n n C7B C8B PLC sing 434 n n C7B H7A1 PLC sing 435 n n C7B H7A2 PLC sing 436 n n C8B C9B PLC sing 437 n n C8B H8A1 PLC sing 438 n n C8B H8A2 PLC sing 439 n n C9B CAA PLC sing 440 n n C9B H9A1 PLC sing 441 n n C9B H9A2 PLC sing 442 n n CAA CBA PLC sing 443 n n CAA HTA1 PLC sing 444 n n CAA HTA2 PLC sing 445 n n CBA HEA1 PLC sing 446 n n CBA HEA2 PLC sing 447 n n CBA HEA3 PLC sing 448 n n O1P P PLC doub 449 n n O2P P PLC sing 450 n n O2P HOP2 PLC sing 451 n n O3P P PLC sing 452 n n O4P P PLC sing 453 n n # _atom_sites.entry_id 6F0R _atom_sites.fract_transf_matrix[1][1] 0.00553 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001203 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007552 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006394 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 ACT A 1 401 401 ACT ACT . G 3 PLC A 1 402 402 PLC PLC . H 4 CL A 1 403 405 CL CL . I 4 CL A 1 404 406 CL CL . J 4 CL A 1 405 407 CL CL . K 2 ACT A 1 406 410 ACT ACT . L 5 LMT A 1 407 412 LMT LMT . M 2 ACT B 1 401 401 ACT ACT . N 3 PLC B 1 402 402 PLC PLC . O 4 CL B 1 403 405 CL CL . P 2 ACT B 1 404 407 ACT ACT . Q 5 LMT B 1 405 408 LMT LMT . R 6 NA C 1 401 409 NA NA . S 5 LMT C 1 402 411 LMT LMT . T 2 ACT C 1 403 401 ACT ACT . U 3 PLC C 1 404 402 PLC PLC . V 2 ACT C 1 405 407 ACT ACT . W 5 LMT C 1 406 408 LMT LMT . X 2 ACT D 1 401 401 ACT ACT . Y 3 PLC D 1 402 402 PLC PLC . Z 2 ACT D 1 403 407 ACT ACT . AA 5 LMT D 1 404 408 LMT LMT . BA 2 ACT E 1 401 401 ACT ACT . CA 3 PLC E 1 402 402 PLC PLC . DA 2 ACT E 1 403 407 ACT ACT . EA 5 LMT E 1 404 408 LMT LMT . FA 7 HOH A 1 501 565 HOH HOH . FA 7 HOH A 2 502 205 HOH HOH . FA 7 HOH A 3 503 232 HOH HOH . FA 7 HOH A 4 504 208 HOH HOH . FA 7 HOH A 5 505 237 HOH HOH . FA 7 HOH A 6 506 215 HOH HOH . GA 7 HOH B 1 501 238 HOH HOH . GA 7 HOH B 2 502 222 HOH HOH . GA 7 HOH B 3 503 143 HOH HOH . GA 7 HOH B 4 504 13 HOH HOH . GA 7 HOH B 5 505 218 HOH HOH . GA 7 HOH B 6 506 220 HOH HOH . GA 7 HOH B 7 507 117 HOH HOH . GA 7 HOH B 8 508 140 HOH HOH . GA 7 HOH B 9 509 216 HOH HOH . HA 7 HOH C 1 501 214 HOH HOH . HA 7 HOH C 2 502 501 HOH HOH . HA 7 HOH C 3 503 231 HOH HOH . HA 7 HOH C 4 504 217 HOH HOH . HA 7 HOH C 5 505 233 HOH HOH . IA 7 HOH D 1 501 11 HOH HOH . IA 7 HOH D 2 502 74 HOH HOH . IA 7 HOH D 3 503 59 HOH HOH . IA 7 HOH D 4 504 239 HOH HOH . IA 7 HOH D 5 505 234 HOH HOH . IA 7 HOH D 6 506 192 HOH HOH . IA 7 HOH D 7 507 206 HOH HOH . IA 7 HOH D 8 508 210 HOH HOH . JA 7 HOH E 1 501 221 HOH HOH . JA 7 HOH E 2 502 57 HOH HOH . JA 7 HOH E 3 503 213 HOH HOH . JA 7 HOH E 4 504 225 HOH HOH . JA 7 HOH E 5 505 236 HOH HOH . JA 7 HOH E 6 506 31 HOH HOH . JA 7 HOH E 7 507 65 HOH HOH . JA 7 HOH E 8 508 411 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLC . . . CA 3 71.399 -2.965 27.917 1 118.52 ? C1 PLC 402 E 1 HETATM 2 C C2 PLC . . . CA 3 70.839 -3.558 29.185 1 110.63 ? C2 PLC 402 E 1 HETATM 3 C C3 PLC . . . CA 3 71.735 -4.637 29.731 1 105.6 ? C3 PLC 402 E 1 HETATM 4 C C4 PLC . . . CA 3 73.51 -3.31 24.227 1 132.59 ? C4 PLC 402 E 1 HETATM 5 C C5 PLC . . . CA 3 74.825 -2.557 24.142 1 134.39 ? C5 PLC 402 E 1 HETATM 6 C C6 PLC . . . CA 3 76.772 -1.751 22.893 1 138.91 ? C6 PLC 402 E 1 HETATM 7 C C7 PLC . . . CA 3 76.296 -4.131 22.854 1 134.92 ? C7 PLC 402 E 1 HETATM 8 C C8 PLC . . . CA 3 74.878 -2.582 21.611 1 137.08 ? C8 PLC 402 E 1 HETATM 9 C C' PLC . . . CA 3 69.57 -2.046 30.628 1 103.02 ? C' PLC 402 E 1 HETATM 10 C C1' PLC . . . CA 3 69.662 -1.432 32 1 94 ? C1' PLC 402 E 1 HETATM 11 C C2' PLC . . . CA 3 68.386 -1.505 32.835 1 84.23 ? C2' PLC 402 E 1 HETATM 12 C C3' PLC . . . CA 3 68.186 -2.826 33.563 1 73.48 ? C3' PLC 402 E 1 HETATM 13 C C4' PLC . . . CA 3 68.894 -2.932 34.899 1 66.28 ? C4' PLC 402 E 1 HETATM 14 C C5' PLC . . . CA 3 68.268 -3.937 35.857 1 60.88 ? C5' PLC 402 E 1 HETATM 15 C C6' PLC . . . CA 3 69.099 -4.197 37.109 1 54.84 ? C6' PLC 402 E 1 HETATM 16 C C7' PLC . . . CA 3 68.34 -4.768 38.296 1 50.05 ? C7' PLC 402 E 1 HETATM 17 C CB PLC . . . CA 3 71.907 -5.252 32.049 1 93.51 ? CB PLC 402 E 1 HETATM 18 C C1B PLC . . . CA 3 71.089 -5.689 33.228 1 86.8 ? C1B PLC 402 E 1 HETATM 19 C C2B PLC . . . CA 3 71.907 -6.17 34.418 1 80.78 ? C2B PLC 402 E 1 HETATM 20 C C3B PLC . . . CA 3 71.08 -6.86 35.492 1 73.46 ? C3B PLC 402 E 1 HETATM 21 C C4B PLC . . . CA 3 71.893 -7.176 36.729 1 68.79 ? C4B PLC 402 E 1 HETATM 22 C C5B PLC . . . CA 3 71.431 -8.377 37.527 1 62.92 ? C5B PLC 402 E 1 HETATM 23 C C6B PLC . . . CA 3 72.435 -8.742 38.596 1 60.19 ? C6B PLC 402 E 1 HETATM 24 C C7B PLC . . . CA 3 72.222 -10.123 39.173 1 59.32 ? C7B PLC 402 E 1 HETATM 25 O O' PLC . . . CA 3 68.573 -2.068 29.944 1 104.32 ? O' PLC 402 E 1 HETATM 26 O OB PLC . . . CA 3 73.086 -5.028 32.073 1 93.79 ? OB PLC 402 E 1 HETATM 27 O O2 PLC . . . CA 3 70.768 -2.545 30.243 1 108.66 ? O2 PLC 402 E 1 HETATM 28 O O3 PLC . . . CA 3 71.142 -5.14 30.953 1 100.44 ? O3 PLC 402 E 1 HETATM 29 O O1P PLC . . . CA 3 71.021 -4.796 24.924 1 130.36 ? O1P PLC 402 E 1 HETATM 30 O O2P PLC . . . CA 3 70.521 -2.475 24.377 1 133 ? O2P PLC 402 E 1 HETATM 31 O O3P PLC . . . CA 3 70.466 -3.174 26.827 1 124.79 ? O3P PLC 402 E 1 HETATM 32 O O4P PLC . . . CA 3 72.806 -2.927 25.437 1 132.33 ? O4P PLC 402 E 1 HETATM 33 N N PLC . . . CA 3 75.674 -2.768 22.871 1 136.42 ? N PLC 402 E 1 HETATM 34 P P PLC . . . CA 3 71.227 -3.399 25.381 1 130.77 ? P PLC 402 E 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #