data_6F0V
#
_model_server_result.job_id            2Bu2bn5Ix0PR1siRK-BgkQ 
_model_server_result.datetime_utc      '2024-11-19 07:40:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6f0v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":402}' 
#
_entry.id    6F0V 
#
_exptl.entry_id    6F0V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              622.834 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIUNDECYL PHOSPHATIDYL CHOLINE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.21 
_cell.angle_gamma         90 
_cell.entry_id            6F0V 
_cell.length_a            179.34 
_cell.length_b            132.5 
_cell.length_c            158.31 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6F0V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 M N N 
? 6 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ILE 71 A ILE 71 1_555 I NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? 
metalc ? metalc2 B O PRO 68 B PRO 68 1_555 O NA NA . B NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.079 ? 
metalc ? metalc3 B O ILE 71 B ILE 71 1_555 O NA NA . B NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
metalc ? metalc4 C O PRO 68 C PRO 68 1_555 V NA NA . C NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? 
metalc ? metalc5 C O ILE 71 C ILE 71 1_555 V NA NA . C NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? 
metalc ? metalc6 D O PRO 68 D PRO 68 1_555 BA NA NA . D NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.971 ? 
metalc ? metalc7 D O ILE 71 D ILE 71 1_555 BA NA NA . D NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc8 E O PRO 68 E PRO 68 1_555 HA NA NA . E NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.188 ? 
metalc ? metalc9 E O ILE 71 E ILE 71 1_555 HA NA NA . E NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.921 ? 
#
_chem_comp.formula           'C32 H65 N O8 P 1' 
_chem_comp.formula_weight    622.834 
_chem_comp.id                PLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIUNDECYL PHOSPHATIDYL CHOLINE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PLC sing 348 n n 
C1 O3P PLC sing 349 n n 
C1 H11 PLC sing 350 n n 
C1 H12 PLC sing 351 n n 
C2 C3 PLC sing 352 n n 
C2 O2 PLC sing 353 n n 
C2 H2 PLC sing 354 n n 
C3 O3 PLC sing 355 n n 
C3 H31 PLC sing 356 n n 
C3 H32 PLC sing 357 n n 
C4 C5 PLC sing 358 n n 
C4 O4P PLC sing 359 n n 
C4 H41 PLC sing 360 n n 
C4 H42 PLC sing 361 n n 
C5 N PLC sing 362 n n 
C5 H51 PLC sing 363 n n 
C5 H52 PLC sing 364 n n 
C6 N PLC sing 365 n n 
C6 H61 PLC sing 366 n n 
C6 H62 PLC sing 367 n n 
C6 H63 PLC sing 368 n n 
C7 N PLC sing 369 n n 
C7 H71 PLC sing 370 n n 
C7 H72 PLC sing 371 n n 
C7 H73 PLC sing 372 n n 
C8 N PLC sing 373 n n 
C8 H81 PLC sing 374 n n 
C8 H82 PLC sing 375 n n 
C8 H83 PLC sing 376 n n 
C' C1' PLC sing 377 n n 
C' O' PLC doub 378 n n 
C' O2 PLC sing 379 n n 
C1' C2' PLC sing 380 n n 
C1' "H1'1" PLC sing 381 n n 
C1' "H1'2" PLC sing 382 n n 
C2' C3' PLC sing 383 n n 
C2' "H2'1" PLC sing 384 n n 
C2' "H2'2" PLC sing 385 n n 
C3' C4' PLC sing 386 n n 
C3' "H3'1" PLC sing 387 n n 
C3' "H3'2" PLC sing 388 n n 
C4' C5' PLC sing 389 n n 
C4' "H4'1" PLC sing 390 n n 
C4' "H4'2" PLC sing 391 n n 
C5' C6' PLC sing 392 n n 
C5' "H5'1" PLC sing 393 n n 
C5' "H5'2" PLC sing 394 n n 
C6' C7' PLC sing 395 n n 
C6' "H6'1" PLC sing 396 n n 
C6' "H6'2" PLC sing 397 n n 
C7' C8' PLC sing 398 n n 
C7' "H7'1" PLC sing 399 n n 
C7' "H7'2" PLC sing 400 n n 
C8' C9' PLC sing 401 n n 
C8' "H8'1" PLC sing 402 n n 
C8' "H8'2" PLC sing 403 n n 
C9' CA' PLC sing 404 n n 
C9' "H9'1" PLC sing 405 n n 
C9' "H9'2" PLC sing 406 n n 
CA' CB' PLC sing 407 n n 
CA' "HT'1" PLC sing 408 n n 
CA' "HT'2" PLC sing 409 n n 
CB' "HE'1" PLC sing 410 n n 
CB' "HE'2" PLC sing 411 n n 
CB' "HE'3" PLC sing 412 n n 
CB C1B PLC sing 413 n n 
CB OB PLC doub 414 n n 
CB O3 PLC sing 415 n n 
C1B C2B PLC sing 416 n n 
C1B H1A1 PLC sing 417 n n 
C1B H1A2 PLC sing 418 n n 
C2B C3B PLC sing 419 n n 
C2B H2A1 PLC sing 420 n n 
C2B H2A2 PLC sing 421 n n 
C3B C4B PLC sing 422 n n 
C3B H3A1 PLC sing 423 n n 
C3B H3A2 PLC sing 424 n n 
C4B C5B PLC sing 425 n n 
C4B H4A1 PLC sing 426 n n 
C4B H4A2 PLC sing 427 n n 
C5B C6B PLC sing 428 n n 
C5B H5A1 PLC sing 429 n n 
C5B H5A2 PLC sing 430 n n 
C6B C7B PLC sing 431 n n 
C6B H6A1 PLC sing 432 n n 
C6B H6A2 PLC sing 433 n n 
C7B C8B PLC sing 434 n n 
C7B H7A1 PLC sing 435 n n 
C7B H7A2 PLC sing 436 n n 
C8B C9B PLC sing 437 n n 
C8B H8A1 PLC sing 438 n n 
C8B H8A2 PLC sing 439 n n 
C9B CAA PLC sing 440 n n 
C9B H9A1 PLC sing 441 n n 
C9B H9A2 PLC sing 442 n n 
CAA CBA PLC sing 443 n n 
CAA HTA1 PLC sing 444 n n 
CAA HTA2 PLC sing 445 n n 
CBA HEA1 PLC sing 446 n n 
CBA HEA2 PLC sing 447 n n 
CBA HEA3 PLC sing 448 n n 
O1P P PLC doub 449 n n 
O2P P PLC sing 450 n n 
O2P HOP2 PLC sing 451 n n 
O3P P PLC sing 452 n n 
O4P P PLC sing 453 n n 
#
_atom_sites.entry_id                     6F0V 
_atom_sites.fract_transf_matrix[1][1]    0.005576 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001105 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007547 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00644 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 CL A 1 401 405 CL CL . 
G 2 CL A 1 402 406 CL CL . 
H 2 CL A 1 403 407 CL CL . 
I 3 NA A 1 404 408 NA NA . 
J 4 ACT A 1 405 410 ACT ACT . 
K 5 LMT A 1 406 412 LMT LMT . 
L 4 ACT B 1 401 401 ACT ACT . 
M 6 PLC B 1 402 403 PLC PLC . 
N 2 CL B 1 403 405 CL CL . 
O 3 NA B 1 404 406 NA NA . 
P 4 ACT B 1 405 407 ACT ACT . 
Q 5 LMT B 1 406 408 LMT LMT . 
R 4 ACT B 1 407 401 ACT ACT . 
S 3 NA C 1 401 409 NA NA . 
T 6 PLC C 1 402 402 PLC PLC . 
U 2 CL C 1 403 405 CL CL . 
V 3 NA C 1 404 406 NA NA . 
W 4 ACT C 1 405 407 ACT ACT . 
X 5 LMT C 1 406 408 LMT LMT . 
Y 4 ACT C 1 407 401 ACT ACT . 
Z 5 LMT D 1 401 411 LMT LMT . 
AA 2 CL D 1 402 405 CL CL . 
BA 3 NA D 1 403 406 NA NA . 
CA 4 ACT D 1 404 407 ACT ACT . 
DA 5 LMT D 1 405 408 LMT LMT . 
EA 4 ACT D 1 406 401 ACT ACT . 
FA 4 ACT E 1 401 401 ACT ACT . 
GA 2 CL E 1 402 405 CL CL . 
HA 3 NA E 1 403 406 NA NA . 
IA 4 ACT E 1 404 407 ACT ACT . 
JA 5 LMT E 1 405 408 LMT LMT . 
KA 7 HOH A 1 501 501 HOH HOH . 
KA 7 HOH A 2 502 414 HOH HOH . 
KA 7 HOH A 3 503 572 HOH HOH . 
KA 7 HOH A 4 504 565 HOH HOH . 
KA 7 HOH A 5 505 579 HOH HOH . 
KA 7 HOH A 6 506 503 HOH HOH . 
LA 7 HOH B 1 501 566 HOH HOH . 
LA 7 HOH B 2 502 528 HOH HOH . 
LA 7 HOH B 3 503 562 HOH HOH . 
LA 7 HOH B 4 504 504 HOH HOH . 
LA 7 HOH B 5 505 559 HOH HOH . 
LA 7 HOH B 6 506 560 HOH HOH . 
LA 7 HOH B 7 507 512 HOH HOH . 
LA 7 HOH B 8 508 622 HOH HOH . 
LA 7 HOH B 9 509 501 HOH HOH . 
LA 7 HOH B 10 510 412 HOH HOH . 
MA 7 HOH C 1 501 510 HOH HOH . 
MA 7 HOH C 2 502 521 HOH HOH . 
MA 7 HOH C 3 503 409 HOH HOH . 
MA 7 HOH C 4 504 551 HOH HOH . 
MA 7 HOH C 5 505 550 HOH HOH . 
MA 7 HOH C 6 506 501 HOH HOH . 
MA 7 HOH C 7 507 549 HOH HOH . 
NA 7 HOH D 1 501 540 HOH HOH . 
NA 7 HOH D 2 502 526 HOH HOH . 
NA 7 HOH D 3 503 410 HOH HOH . 
NA 7 HOH D 4 504 501 HOH HOH . 
NA 7 HOH D 5 505 539 HOH HOH . 
NA 7 HOH D 6 506 559 HOH HOH . 
NA 7 HOH D 7 507 566 HOH HOH . 
OA 7 HOH E 1 501 413 HOH HOH . 
OA 7 HOH E 2 502 560 HOH HOH . 
OA 7 HOH E 3 503 577 HOH HOH . 
OA 7 HOH E 4 504 411 HOH HOH . 
OA 7 HOH E 5 505 501 HOH HOH . 
OA 7 HOH E 6 506 510 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C' PLC . . . M 6 44.545 -33.95 67.43 1 75.97 ? C' PLC 402 B 1 
HETATM 2 C C1' PLC . . . M 6 46.028 -34.174 67.447 1 76.94 ? C1' PLC 402 B 1 
HETATM 3 C C2' PLC . . . M 6 46.526 -34.795 68.745 1 78.37 ? C2' PLC 402 B 1 
HETATM 4 C C3' PLC . . . M 6 48.018 -35.102 68.749 1 76.83 ? C3' PLC 402 B 1 
HETATM 5 C C4' PLC . . . M 6 48.419 -36.228 69.702 1 75.4 ? C4' PLC 402 B 1 
HETATM 6 C C5' PLC . . . M 6 49.571 -35.91 70.647 1 70.26 ? C5' PLC 402 B 1 
HETATM 7 C C6' PLC . . . M 6 49.919 -37.059 71.578 1 68.38 ? C6' PLC 402 B 1 
HETATM 8 C C7' PLC . . . M 6 50.794 -36.678 72.76 1 67.91 ? C7' PLC 402 B 1 
HETATM 9 C C8' PLC . . . M 6 51.012 -37.821 73.739 1 69.17 ? C8' PLC 402 B 1 
HETATM 10 C C9' PLC . . . M 6 51.653 -37.446 75.066 1 69.23 ? C9' PLC 402 B 1 
HETATM 11 C CA' PLC . . . M 6 52.182 -38.651 75.836 1 74.06 ? CA' PLC 402 B 1 
HETATM 12 C CB' PLC . . . M 6 51.427 -38.961 77.122 1 77.28 ? CB' PLC 402 B 1 
HETATM 13 C CB PLC . . . M 6 41.937 -38.012 64.153 1 85.07 ? CB PLC 402 B 1 
HETATM 14 C C1B PLC . . . M 6 42.35 -39.013 65.192 1 88.19 ? C1B PLC 402 B 1 
HETATM 15 C C2B PLC . . . M 6 43.406 -38.484 66.159 1 87.65 ? C2B PLC 402 B 1 
HETATM 16 C C3B PLC . . . M 6 43.873 -39.525 67.17 1 90.09 ? C3B PLC 402 B 1 
HETATM 17 C C4B PLC . . . M 6 44.934 -39.013 68.142 1 89.7 ? C4B PLC 402 B 1 
HETATM 18 C C5B PLC . . . M 6 45.577 -40.104 68.982 1 90.11 ? C5B PLC 402 B 1 
HETATM 19 C C6B PLC . . . M 6 46.645 -39.64 69.964 1 88.27 ? C6B PLC 402 B 1 
HETATM 20 C C7B PLC . . . M 6 47.153 -40.772 70.856 1 89.43 ? C7B PLC 402 B 1 
HETATM 21 C C8B PLC . . . M 6 48.201 -40.385 71.894 1 88 ? C8B PLC 402 B 1 
HETATM 22 C C9B PLC . . . M 6 48.55 -41.5 72.871 1 89.44 ? C9B PLC 402 B 1 
HETATM 23 C CAA PLC . . . M 6 49.504 -41.081 73.979 1 88.91 ? CAA PLC 402 B 1 
HETATM 24 C CBA PLC . . . M 6 49.636 -42.103 75.094 1 91.58 ? CBA PLC 402 B 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           247 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           24 
#