data_6F0X
#
_model_server_result.job_id            -SvemugMoZwKQYlz-Cnw2w 
_model_server_result.datetime_utc      '2025-07-03 05:19:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6f0x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":901}' 
#
_entry.id    6F0X 
#
_exptl.entry_id    6F0X 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.247 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6F0X 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6F0X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    nonameric 
_pdbx_struct_assembly.oligomeric_count      9 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 J N N 
? 5 K N N 
? 5 L N N 
? 5 M N N 
? 5 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 I SG CYS 79 Z CYS 79 1_555 I SG CYS 106 Z CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
covale ? covale1 A ND2 ASN 300 A ASN 300 1_555 J O3G AGS . A AGS 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
covale ? covale2 J S1G AGS . A AGS 901 1_555 B NH2 ARG 312 B ARG 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.628 ? 
covale ? covale3 B N GLY 184 B GLY 184 1_555 K O2B AGS . B AGS 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? 
covale ? covale4 B ND2 ASN 300 B ASN 300 1_555 K O3G AGS . B AGS 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? 
covale ? covale5 B NH2 ARG 386 B ARG 386 1_555 K S1G AGS . B AGS 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.629 ? 
covale ? covale6 C N LYS 185 C LYS 185 1_555 L O1B AGS . C AGS 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? 
covale ? covale7 C N SER 187 C SER 187 1_555 L O1A AGS . C AGS 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.304 ? 
covale ? covale8 C ND2 ASN 300 C ASN 300 1_555 L O3G AGS . C AGS 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? 
covale ? covale9 D N LYS 185 D LYS 185 1_555 M O2B AGS . D AGS 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? 
covale ? covale10 D N SER 187 D SER 187 1_555 M O1A AGS . D AGS 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? 
covale ? covale11 D NH2 ARG 386 D ARG 386 1_555 M S1G AGS . D AGS 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.63 ? 
covale ? covale12 E N LYS 185 E LYS 185 1_555 N O2B AGS . E AGS 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? 
covale ? covale13 E NH2 ARG 386 E ARG 386 1_555 N S1G AGS . E AGS 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.631 ? 
#
_chem_comp.formula           'C10 H16 N5 O12 P3 S' 
_chem_comp.formula_weight    523.247 
_chem_comp.id                AGS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG S1G AGS doub 1 n n 
PG O2G AGS sing 2 n n 
PG O3G AGS sing 3 n n 
PG O3B AGS sing 4 n n 
PB O1B AGS doub 5 n n 
PB O2B AGS sing 6 n n 
PB O3B AGS sing 7 n n 
PB O3A AGS sing 8 n n 
PA O1A AGS doub 9 n n 
PA O2A AGS sing 10 n n 
PA O3A AGS sing 11 n n 
PA O5' AGS sing 12 n n 
O5' C5' AGS sing 13 n n 
C5' C4' AGS sing 14 n n 
C4' O4' AGS sing 15 n n 
C4' C3' AGS sing 16 n n 
O4' C1' AGS sing 17 n n 
C3' O3' AGS sing 18 n n 
C3' C2' AGS sing 19 n n 
C2' O2' AGS sing 20 n n 
C2' C1' AGS sing 21 n n 
C1' N9 AGS sing 22 n n 
N9 C8 AGS sing 23 n y 
N9 C4 AGS sing 24 n y 
C8 N7 AGS doub 25 n y 
N7 C5 AGS sing 26 n y 
C5 C6 AGS sing 27 n y 
C5 C4 AGS doub 28 n y 
C6 N6 AGS sing 29 n n 
C6 N1 AGS doub 30 n y 
N1 C2 AGS sing 31 n y 
C2 N3 AGS doub 32 n y 
N3 C4 AGS sing 33 n y 
O2G HOG2 AGS sing 34 n n 
O3G H21 AGS sing 35 n n 
O2B HOB2 AGS sing 36 n n 
O2A HOA2 AGS sing 37 n n 
C5' "H5'1" AGS sing 38 n n 
C5' "H5'2" AGS sing 39 n n 
C4' H4' AGS sing 40 n n 
C3' H3' AGS sing 41 n n 
O3' HO3' AGS sing 42 n n 
C2' H2' AGS sing 43 n n 
O2' HO2' AGS sing 44 n n 
C1' H1' AGS sing 45 n n 
C8 H8 AGS sing 46 n n 
N6 HN61 AGS sing 47 n n 
N6 HN62 AGS sing 48 n n 
C2 H2 AGS sing 49 n n 
#
_atom_sites.entry_id                     6F0X 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 5 AGS A 1 901 901 AGS AGS . 
K 5 AGS B 1 901 901 AGS AGS . 
L 5 AGS C 1 901 901 AGS AGS . 
M 5 AGS D 1 901 901 AGS AGS . 
N 5 AGS E 1 901 901 AGS AGS . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG AGS . . . L 5 80.239 75.822 99.732 1 125.89 ? PG AGS 901 C 1 
HETATM 2 S S1G AGS . . . L 5 80.162 75.625 101.658 1 125.89 ? S1G AGS 901 C 1 
HETATM 3 O O2G AGS . . . L 5 81.581 75.261 99.199 1 125.89 ? O2G AGS 901 C 1 
HETATM 4 O O3G AGS . . . L 5 80.132 77.308 99.318 1 125.89 ? O3G AGS 901 C 1 
HETATM 5 P PB AGS . . . L 5 79.45 74.326 97.749 1 125.89 ? PB AGS 901 C 1 
HETATM 6 O O1B AGS . . . L 5 78.316 74.279 96.808 1 125.89 ? O1B AGS 901 C 1 
HETATM 7 O O2B AGS . . . L 5 80.659 75.133 97.279 1 125.89 ? O2B AGS 901 C 1 
HETATM 8 O O3B AGS . . . L 5 79.097 74.981 99.116 1 125.89 ? O3B AGS 901 C 1 
HETATM 9 P PA AGS . . . L 5 81.014 72.329 96.943 1 125.89 ? PA AGS 901 C 1 
HETATM 10 O O1A AGS . . . L 5 80.466 72.117 95.527 1 125.89 ? O1A AGS 901 C 1 
HETATM 11 O O2A AGS . . . L 5 82.172 73.313 97.087 1 125.89 ? O2A AGS 901 C 1 
HETATM 12 O O3A AGS . . . L 5 79.975 72.885 97.968 1 125.89 ? O3A AGS 901 C 1 
HETATM 13 O O5' AGS . . . L 5 81.348 70.941 97.618 1 125.89 ? O5' AGS 901 C 1 
HETATM 14 C C5' AGS . . . L 5 80.516 70.519 98.718 1 125.89 ? C5' AGS 901 C 1 
HETATM 15 C C4' AGS . . . L 5 81.126 69.374 99.482 1 125.89 ? C4' AGS 901 C 1 
HETATM 16 O O4' AGS . . . L 5 80.18 68.928 100.475 1 125.89 ? O4' AGS 901 C 1 
HETATM 17 C C3' AGS . . . L 5 81.415 68.134 98.652 1 125.89 ? C3' AGS 901 C 1 
HETATM 18 O O3' AGS . . . L 5 82.36 67.303 99.312 1 125.89 ? O3' AGS 901 C 1 
HETATM 19 C C2' AGS . . . L 5 80.053 67.452 98.624 1 125.89 ? C2' AGS 901 C 1 
HETATM 20 O O2' AGS . . . L 5 80.171 66.046 98.462 1 125.89 ? O2' AGS 901 C 1 
HETATM 21 C C1' AGS . . . L 5 79.541 67.742 100.035 1 125.89 ? C1' AGS 901 C 1 
HETATM 22 N N9 AGS . . . L 5 78.097 67.928 100.123 1 125.89 ? N9 AGS 901 C 1 
HETATM 23 C C8 AGS . . . L 5 77.433 68.942 100.759 1 125.89 ? C8 AGS 901 C 1 
HETATM 24 N N7 AGS . . . L 5 76.128 68.854 100.685 1 125.89 ? N7 AGS 901 C 1 
HETATM 25 C C5 AGS . . . L 5 75.918 67.699 99.95 1 125.89 ? C5 AGS 901 C 1 
HETATM 26 C C6 AGS . . . L 5 74.748 67.052 99.522 1 125.89 ? C6 AGS 901 C 1 
HETATM 27 N N6 AGS . . . L 5 73.519 67.494 99.786 1 125.89 ? N6 AGS 901 C 1 
HETATM 28 N N1 AGS . . . L 5 74.887 65.922 98.801 1 125.89 ? N1 AGS 901 C 1 
HETATM 29 C C2 AGS . . . L 5 76.116 65.477 98.537 1 125.89 ? C2 AGS 901 C 1 
HETATM 30 N N3 AGS . . . L 5 77.291 66.001 98.883 1 125.89 ? N3 AGS 901 C 1 
HETATM 31 C C4 AGS . . . L 5 77.122 67.12 99.594 1 125.89 ? C4 AGS 901 C 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#