data_6F15 # _model_server_result.job_id PnIS-YZiF5B3HwxAQcAOfQ _model_server_result.datetime_utc '2024-11-23 19:01:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6f15 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"FA","auth_seq_id":403}' # _entry.id 6F15 # _exptl.entry_id 6F15 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 622.834 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIUNDECYL PHOSPHATIDYL CHOLINE' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.82 _cell.angle_gamma 90 _cell.entry_id 6F15 _cell.length_a 183.21 _cell.length_b 133.1 _cell.length_c 161.77 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6F15 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 Q N N ? 3 R N N ? 3 X N N ? 3 Y N N ? 3 FA N N ? 3 GA N N ? 3 MA N N ? 3 NA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ILE 71 A ILE 71 1_555 L NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc2 B O ILE 71 B ILE 71 1_555 T NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc3 C O PRO 68 C PRO 68 1_555 AA NA NA . C NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? metalc ? metalc4 C O ILE 71 C ILE 71 1_555 AA NA NA . C NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc5 D O ILE 71 D ILE 71 1_555 IA NA NA . D NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.057 ? metalc ? metalc6 E O PRO 68 E PRO 68 1_555 PA NA NA . E NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? metalc ? metalc7 E O ILE 71 E ILE 71 1_555 PA NA NA . E NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? # _chem_comp.formula 'C32 H65 N O8 P 1' _chem_comp.formula_weight 622.834 _chem_comp.id PLC _chem_comp.mon_nstd_flag . _chem_comp.name 'DIUNDECYL PHOSPHATIDYL CHOLINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PLC sing 348 n n C1 O3P PLC sing 349 n n C1 H11 PLC sing 350 n n C1 H12 PLC sing 351 n n C2 C3 PLC sing 352 n n C2 O2 PLC sing 353 n n C2 H2 PLC sing 354 n n C3 O3 PLC sing 355 n n C3 H31 PLC sing 356 n n C3 H32 PLC sing 357 n n C4 C5 PLC sing 358 n n C4 O4P PLC sing 359 n n C4 H41 PLC sing 360 n n C4 H42 PLC sing 361 n n C5 N PLC sing 362 n n C5 H51 PLC sing 363 n n C5 H52 PLC sing 364 n n C6 N PLC sing 365 n n C6 H61 PLC sing 366 n n C6 H62 PLC sing 367 n n C6 H63 PLC sing 368 n n C7 N PLC sing 369 n n C7 H71 PLC sing 370 n n C7 H72 PLC sing 371 n n C7 H73 PLC sing 372 n n C8 N PLC sing 373 n n C8 H81 PLC sing 374 n n C8 H82 PLC sing 375 n n C8 H83 PLC sing 376 n n C' C1' PLC sing 377 n n C' O' PLC doub 378 n n C' O2 PLC sing 379 n n C1' C2' PLC sing 380 n n C1' "H1'1" PLC sing 381 n n C1' "H1'2" PLC sing 382 n n C2' C3' PLC sing 383 n n C2' "H2'1" PLC sing 384 n n C2' "H2'2" PLC sing 385 n n C3' C4' PLC sing 386 n n C3' "H3'1" PLC sing 387 n n C3' "H3'2" PLC sing 388 n n C4' C5' PLC sing 389 n n C4' "H4'1" PLC sing 390 n n C4' "H4'2" PLC sing 391 n n C5' C6' PLC sing 392 n n C5' "H5'1" PLC sing 393 n n C5' "H5'2" PLC sing 394 n n C6' C7' PLC sing 395 n n C6' "H6'1" PLC sing 396 n n C6' "H6'2" PLC sing 397 n n C7' C8' PLC sing 398 n n C7' "H7'1" PLC sing 399 n n C7' "H7'2" PLC sing 400 n n C8' C9' PLC sing 401 n n C8' "H8'1" PLC sing 402 n n C8' "H8'2" PLC sing 403 n n C9' CA' PLC sing 404 n n C9' "H9'1" PLC sing 405 n n C9' "H9'2" PLC sing 406 n n CA' CB' PLC sing 407 n n CA' "HT'1" PLC sing 408 n n CA' "HT'2" PLC sing 409 n n CB' "HE'1" PLC sing 410 n n CB' "HE'2" PLC sing 411 n n CB' "HE'3" PLC sing 412 n n CB C1B PLC sing 413 n n CB OB PLC doub 414 n n CB O3 PLC sing 415 n n C1B C2B PLC sing 416 n n C1B H1A1 PLC sing 417 n n C1B H1A2 PLC sing 418 n n C2B C3B PLC sing 419 n n C2B H2A1 PLC sing 420 n n C2B H2A2 PLC sing 421 n n C3B C4B PLC sing 422 n n C3B H3A1 PLC sing 423 n n C3B H3A2 PLC sing 424 n n C4B C5B PLC sing 425 n n C4B H4A1 PLC sing 426 n n C4B H4A2 PLC sing 427 n n C5B C6B PLC sing 428 n n C5B H5A1 PLC sing 429 n n C5B H5A2 PLC sing 430 n n C6B C7B PLC sing 431 n n C6B H6A1 PLC sing 432 n n C6B H6A2 PLC sing 433 n n C7B C8B PLC sing 434 n n C7B H7A1 PLC sing 435 n n C7B H7A2 PLC sing 436 n n C8B C9B PLC sing 437 n n C8B H8A1 PLC sing 438 n n C8B H8A2 PLC sing 439 n n C9B CAA PLC sing 440 n n C9B H9A1 PLC sing 441 n n C9B H9A2 PLC sing 442 n n CAA CBA PLC sing 443 n n CAA HTA1 PLC sing 444 n n CAA HTA2 PLC sing 445 n n CBA HEA1 PLC sing 446 n n CBA HEA2 PLC sing 447 n n CBA HEA3 PLC sing 448 n n O1P P PLC doub 449 n n O2P P PLC sing 450 n n O2P HOP2 PLC sing 451 n n O3P P PLC sing 452 n n O4P P PLC sing 453 n n # _atom_sites.entry_id 6F15 _atom_sites.fract_transf_matrix[1][1] 0.005458 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001242 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007513 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00634 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 ACT A 1 401 401 ACT ACT . G 3 PLC A 1 402 402 PLC PLC . H 3 PLC A 1 403 403 PLC PLC . I 4 CL A 1 404 405 CL CL . J 4 CL A 1 405 406 CL CL . K 4 CL A 1 406 407 CL CL . L 5 NA A 1 407 408 NA NA . M 2 ACT A 1 408 410 ACT ACT . N 6 LMT A 1 409 411 LMT LMT . O 6 LMT A 1 410 412 LMT LMT . P 2 ACT B 1 401 401 ACT ACT . Q 3 PLC B 1 402 402 PLC PLC . R 3 PLC B 1 403 403 PLC PLC . S 4 CL B 1 404 405 CL CL . T 5 NA B 1 405 406 NA NA . U 2 ACT B 1 406 407 ACT ACT . V 6 LMT B 1 407 408 LMT LMT . W 2 ACT C 1 401 401 ACT ACT . X 3 PLC C 1 402 402 PLC PLC . Y 3 PLC C 1 403 403 PLC PLC . Z 4 CL C 1 404 405 CL CL . AA 5 NA C 1 405 406 NA NA . BA 2 ACT C 1 406 407 ACT ACT . CA 6 LMT C 1 407 408 LMT LMT . DA 5 NA D 1 401 409 NA NA . EA 2 ACT D 1 402 401 ACT ACT . FA 3 PLC D 1 403 402 PLC PLC . GA 3 PLC D 1 404 403 PLC PLC . HA 4 CL D 1 405 405 CL CL . IA 5 NA D 1 406 406 NA NA . JA 2 ACT D 1 407 407 ACT ACT . KA 6 LMT D 1 408 408 LMT LMT . LA 2 ACT E 1 401 401 ACT ACT . MA 3 PLC E 1 402 402 PLC PLC . NA 3 PLC E 1 403 403 PLC PLC . OA 4 CL E 1 404 405 CL CL . PA 5 NA E 1 405 406 NA NA . QA 2 ACT E 1 406 407 ACT ACT . RA 6 LMT E 1 407 408 LMT LMT . SA 7 HOH A 1 501 210 HOH HOH . SA 7 HOH A 2 502 140 HOH HOH . SA 7 HOH A 3 503 38 HOH HOH . SA 7 HOH A 4 504 112 HOH HOH . SA 7 HOH A 5 505 168 HOH HOH . SA 7 HOH A 6 506 92 HOH HOH . SA 7 HOH A 7 507 145 HOH HOH . SA 7 HOH A 8 508 572 HOH HOH . SA 7 HOH A 9 509 203 HOH HOH . SA 7 HOH A 10 510 501 HOH HOH . SA 7 HOH A 11 511 205 HOH HOH . TA 7 HOH B 1 501 13 HOH HOH . TA 7 HOH B 2 502 16 HOH HOH . TA 7 HOH B 3 503 111 HOH HOH . TA 7 HOH B 4 504 143 HOH HOH . TA 7 HOH B 5 505 19 HOH HOH . TA 7 HOH B 6 506 121 HOH HOH . TA 7 HOH B 7 507 26 HOH HOH . TA 7 HOH B 8 508 183 HOH HOH . TA 7 HOH B 9 509 129 HOH HOH . TA 7 HOH B 10 510 197 HOH HOH . TA 7 HOH B 11 511 166 HOH HOH . TA 7 HOH B 12 512 559 HOH HOH . TA 7 HOH B 13 513 28 HOH HOH . TA 7 HOH B 14 514 146 HOH HOH . TA 7 HOH B 15 515 136 HOH HOH . TA 7 HOH B 16 516 105 HOH HOH . TA 7 HOH B 17 517 194 HOH HOH . TA 7 HOH B 18 518 81 HOH HOH . UA 7 HOH C 1 501 163 HOH HOH . UA 7 HOH C 2 502 95 HOH HOH . UA 7 HOH C 3 503 21 HOH HOH . UA 7 HOH C 4 504 177 HOH HOH . UA 7 HOH C 5 505 118 HOH HOH . UA 7 HOH C 6 506 510 HOH HOH . UA 7 HOH C 7 507 409 HOH HOH . UA 7 HOH C 8 508 551 HOH HOH . UA 7 HOH C 9 509 549 HOH HOH . UA 7 HOH C 10 510 15 HOH HOH . UA 7 HOH C 11 511 209 HOH HOH . UA 7 HOH C 12 512 139 HOH HOH . UA 7 HOH C 13 513 35 HOH HOH . UA 7 HOH C 14 514 521 HOH HOH . UA 7 HOH C 15 515 132 HOH HOH . UA 7 HOH C 16 516 501 HOH HOH . VA 7 HOH D 1 501 11 HOH HOH . VA 7 HOH D 2 502 526 HOH HOH . VA 7 HOH D 3 503 154 HOH HOH . VA 7 HOH D 4 504 131 HOH HOH . VA 7 HOH D 5 505 59 HOH HOH . VA 7 HOH D 6 506 86 HOH HOH . VA 7 HOH D 7 507 130 HOH HOH . VA 7 HOH D 8 508 17 HOH HOH . VA 7 HOH D 9 509 195 HOH HOH . VA 7 HOH D 10 510 120 HOH HOH . VA 7 HOH D 11 511 539 HOH HOH . VA 7 HOH D 12 512 192 HOH HOH . VA 7 HOH D 13 513 501 HOH HOH . VA 7 HOH D 14 514 410 HOH HOH . VA 7 HOH D 15 515 207 HOH HOH . VA 7 HOH D 16 516 37 HOH HOH . VA 7 HOH D 17 517 501 HOH HOH . WA 7 HOH E 1 501 29 HOH HOH . WA 7 HOH E 2 502 176 HOH HOH . WA 7 HOH E 3 503 208 HOH HOH . WA 7 HOH E 4 504 103 HOH HOH . WA 7 HOH E 5 505 57 HOH HOH . WA 7 HOH E 6 506 65 HOH HOH . WA 7 HOH E 7 507 174 HOH HOH . WA 7 HOH E 8 508 577 HOH HOH . WA 7 HOH E 9 509 206 HOH HOH . WA 7 HOH E 10 510 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLC . . . FA 3 78.864 -39.682 24.446 1 101.92 ? C1 PLC 403 D 1 HETATM 2 C C2 PLC . . . FA 3 78.544 -38.729 25.569 1 94.31 ? C2 PLC 403 D 1 HETATM 3 C C3 PLC . . . FA 3 78.454 -39.478 26.873 1 89.55 ? C3 PLC 403 D 1 HETATM 4 C C4 PLC . . . FA 3 78.907 -42.973 21.769 1 120.96 ? C4 PLC 403 D 1 HETATM 5 C C5 PLC . . . FA 3 80.115 -43.869 22.009 1 122.05 ? C5 PLC 403 D 1 HETATM 6 C C6 PLC . . . FA 3 81.423 -45.901 21.59 1 123.88 ? C6 PLC 403 D 1 HETATM 7 C C7 PLC . . . FA 3 79.087 -46.157 22.202 1 123.4 ? C7 PLC 403 D 1 HETATM 8 C C8 PLC . . . FA 3 79.684 -45.331 19.99 1 125.7 ? C8 PLC 403 D 1 HETATM 9 C C' PLC . . . FA 3 79.392 -36.423 25.604 1 87.43 ? C' PLC 403 D 1 HETATM 10 C C1' PLC . . . FA 3 80.512 -35.603 26.189 1 75.89 ? C1' PLC 403 D 1 HETATM 11 C C2' PLC . . . FA 3 80.088 -34.457 27.108 1 65.28 ? C2' PLC 403 D 1 HETATM 12 C C3' PLC . . . FA 3 79.831 -34.888 28.542 1 57.49 ? C3' PLC 403 D 1 HETATM 13 C C4' PLC . . . FA 3 79.744 -33.735 29.53 1 53.13 ? C4' PLC 403 D 1 HETATM 14 C C5' PLC . . . FA 3 79.412 -34.133 30.97 1 49.51 ? C5' PLC 403 D 1 HETATM 15 C C6' PLC . . . FA 3 79.722 -33.049 32.009 1 46.67 ? C6' PLC 403 D 1 HETATM 16 C C7' PLC . . . FA 3 79.376 -33.363 33.464 1 41.71 ? C7' PLC 403 D 1 HETATM 17 C CB PLC . . . FA 3 78.553 -38.891 29.198 1 81.27 ? CB PLC 403 D 1 HETATM 18 C C1B PLC . . . FA 3 78.228 -37.788 30.166 1 75.78 ? C1B PLC 403 D 1 HETATM 19 C C2B PLC . . . FA 3 78.616 -38.075 31.607 1 71.46 ? C2B PLC 403 D 1 HETATM 20 C C3B PLC . . . FA 3 77.859 -37.237 32.62 1 66.71 ? C3B PLC 403 D 1 HETATM 21 C C4B PLC . . . FA 3 78.366 -37.466 34.032 1 64.8 ? C4B PLC 403 D 1 HETATM 22 C C5B PLC . . . FA 3 77.313 -37.353 35.115 1 63.41 ? C5B PLC 403 D 1 HETATM 23 C C6B PLC . . . FA 3 77.868 -37.557 36.518 1 61.78 ? C6B PLC 403 D 1 HETATM 24 C C7B PLC . . . FA 3 76.783 -37.618 37.574 1 61.69 ? C7B PLC 403 D 1 HETATM 25 O O' PLC . . . FA 3 78.421 -35.964 25.054 1 91.38 ? O' PLC 403 D 1 HETATM 26 O OB PLC . . . FA 3 78.993 -39.973 29.501 1 82.03 ? OB PLC 403 D 1 HETATM 27 O O2 PLC . . . FA 3 79.631 -37.753 25.743 1 92.73 ? O2 PLC 403 D 1 HETATM 28 O O3 PLC . . . FA 3 78.266 -38.521 27.942 1 85.52 ? O3 PLC 403 D 1 HETATM 29 O O1P PLC . . . FA 3 76.58 -41.202 22.502 1 121.19 ? O1P PLC 403 D 1 HETATM 30 O O2P PLC . . . FA 3 77.942 -40.123 20.798 1 122.97 ? O2P PLC 403 D 1 HETATM 31 O O3P PLC . . . FA 3 78.178 -39.298 23.231 1 110.82 ? O3P PLC 403 D 1 HETATM 32 O O4P PLC . . . FA 3 79.187 -41.684 22.378 1 121.3 ? O4P PLC 403 D 1 HETATM 33 N N PLC . . . FA 3 80.057 -45.305 21.442 1 123.81 ? N PLC 403 D 1 HETATM 34 P P PLC . . . FA 3 77.926 -40.623 22.254 1 120.62 ? P PLC 403 D 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 34 #