data_6F16 # _model_server_result.job_id NIxihMQ4x1AQcJh-gCKQag _model_server_result.datetime_utc '2024-11-14 06:15:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6f16 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":404}' # _entry.id 6F16 # _exptl.entry_id 6F16 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 622.834 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIUNDECYL PHOSPHATIDYL CHOLINE' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.96 _cell.angle_gamma 90 _cell.entry_id 6F16 _cell.length_a 182.7 _cell.length_b 132.78 _cell.length_c 161.55 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6F16 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 P N N ? 3 Q N N ? 3 W N N ? 3 Y N N ? 3 EA N N ? 3 FA N N ? 3 LA N N ? 3 MA N N ? 3 NA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ILE 71 A ILE 71 1_555 K NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc2 B O ILE 71 B ILE 71 1_555 S NA NA . B NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc3 C O ILE 71 C ILE 71 1_555 AA NA NA . C NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc4 D O ILE 71 D ILE 71 1_555 HA NA NA . D NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc5 E O ILE 71 E ILE 71 1_555 PA NA NA . E NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? # _chem_comp.formula 'C32 H65 N O8 P 1' _chem_comp.formula_weight 622.834 _chem_comp.id PLC _chem_comp.mon_nstd_flag . _chem_comp.name 'DIUNDECYL PHOSPHATIDYL CHOLINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PLC sing 348 n n C1 O3P PLC sing 349 n n C1 H11 PLC sing 350 n n C1 H12 PLC sing 351 n n C2 C3 PLC sing 352 n n C2 O2 PLC sing 353 n n C2 H2 PLC sing 354 n n C3 O3 PLC sing 355 n n C3 H31 PLC sing 356 n n C3 H32 PLC sing 357 n n C4 C5 PLC sing 358 n n C4 O4P PLC sing 359 n n C4 H41 PLC sing 360 n n C4 H42 PLC sing 361 n n C5 N PLC sing 362 n n C5 H51 PLC sing 363 n n C5 H52 PLC sing 364 n n C6 N PLC sing 365 n n C6 H61 PLC sing 366 n n C6 H62 PLC sing 367 n n C6 H63 PLC sing 368 n n C7 N PLC sing 369 n n C7 H71 PLC sing 370 n n C7 H72 PLC sing 371 n n C7 H73 PLC sing 372 n n C8 N PLC sing 373 n n C8 H81 PLC sing 374 n n C8 H82 PLC sing 375 n n C8 H83 PLC sing 376 n n C' C1' PLC sing 377 n n C' O' PLC doub 378 n n C' O2 PLC sing 379 n n C1' C2' PLC sing 380 n n C1' "H1'1" PLC sing 381 n n C1' "H1'2" PLC sing 382 n n C2' C3' PLC sing 383 n n C2' "H2'1" PLC sing 384 n n C2' "H2'2" PLC sing 385 n n C3' C4' PLC sing 386 n n C3' "H3'1" PLC sing 387 n n C3' "H3'2" PLC sing 388 n n C4' C5' PLC sing 389 n n C4' "H4'1" PLC sing 390 n n C4' "H4'2" PLC sing 391 n n C5' C6' PLC sing 392 n n C5' "H5'1" PLC sing 393 n n C5' "H5'2" PLC sing 394 n n C6' C7' PLC sing 395 n n C6' "H6'1" PLC sing 396 n n C6' "H6'2" PLC sing 397 n n C7' C8' PLC sing 398 n n C7' "H7'1" PLC sing 399 n n C7' "H7'2" PLC sing 400 n n C8' C9' PLC sing 401 n n C8' "H8'1" PLC sing 402 n n C8' "H8'2" PLC sing 403 n n C9' CA' PLC sing 404 n n C9' "H9'1" PLC sing 405 n n C9' "H9'2" PLC sing 406 n n CA' CB' PLC sing 407 n n CA' "HT'1" PLC sing 408 n n CA' "HT'2" PLC sing 409 n n CB' "HE'1" PLC sing 410 n n CB' "HE'2" PLC sing 411 n n CB' "HE'3" PLC sing 412 n n CB C1B PLC sing 413 n n CB OB PLC doub 414 n n CB O3 PLC sing 415 n n C1B C2B PLC sing 416 n n C1B H1A1 PLC sing 417 n n C1B H1A2 PLC sing 418 n n C2B C3B PLC sing 419 n n C2B H2A1 PLC sing 420 n n C2B H2A2 PLC sing 421 n n C3B C4B PLC sing 422 n n C3B H3A1 PLC sing 423 n n C3B H3A2 PLC sing 424 n n C4B C5B PLC sing 425 n n C4B H4A1 PLC sing 426 n n C4B H4A2 PLC sing 427 n n C5B C6B PLC sing 428 n n C5B H5A1 PLC sing 429 n n C5B H5A2 PLC sing 430 n n C6B C7B PLC sing 431 n n C6B H6A1 PLC sing 432 n n C6B H6A2 PLC sing 433 n n C7B C8B PLC sing 434 n n C7B H7A1 PLC sing 435 n n C7B H7A2 PLC sing 436 n n C8B C9B PLC sing 437 n n C8B H8A1 PLC sing 438 n n C8B H8A2 PLC sing 439 n n C9B CAA PLC sing 440 n n C9B H9A1 PLC sing 441 n n C9B H9A2 PLC sing 442 n n CAA CBA PLC sing 443 n n CAA HTA1 PLC sing 444 n n CAA HTA2 PLC sing 445 n n CBA HEA1 PLC sing 446 n n CBA HEA2 PLC sing 447 n n CBA HEA3 PLC sing 448 n n O1P P PLC doub 449 n n O2P P PLC sing 450 n n O2P HOP2 PLC sing 451 n n O3P P PLC sing 452 n n O4P P PLC sing 453 n n # _atom_sites.entry_id 6F16 _atom_sites.fract_transf_matrix[1][1] 0.005473 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00126 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007531 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006352 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 ACT A 1 401 401 ACT ACT . G 3 PLC A 1 402 402 PLC PLC . H 4 CL A 1 403 405 CL CL . I 4 CL A 1 404 406 CL CL . J 4 CL A 1 405 407 CL CL . K 5 NA A 1 406 408 NA NA . L 2 ACT A 1 407 410 ACT ACT . M 6 LMT A 1 408 411 LMT LMT . N 6 LMT A 1 409 412 LMT LMT . O 2 ACT A 1 410 401 ACT ACT . P 3 PLC B 1 401 403 PLC PLC . Q 3 PLC B 1 402 402 PLC PLC . R 4 CL B 1 403 405 CL CL . S 5 NA B 1 404 406 NA NA . T 2 ACT B 1 405 407 ACT ACT . U 6 LMT B 1 406 408 LMT LMT . V 5 NA C 1 401 409 NA NA . W 3 PLC C 1 402 403 PLC PLC . X 2 ACT C 1 403 401 ACT ACT . Y 3 PLC C 1 404 402 PLC PLC . Z 4 CL C 1 405 405 CL CL . AA 5 NA C 1 406 406 NA NA . BA 2 ACT C 1 407 407 ACT ACT . CA 6 LMT C 1 408 408 LMT LMT . DA 2 ACT C 1 409 401 ACT ACT . EA 3 PLC D 1 401 403 PLC PLC . FA 3 PLC D 1 402 402 PLC PLC . GA 4 CL D 1 403 405 CL CL . HA 5 NA D 1 404 406 NA NA . IA 2 ACT D 1 405 407 ACT ACT . JA 6 LMT D 1 406 408 LMT LMT . KA 2 ACT D 1 407 401 ACT ACT . LA 3 PLC E 1 401 403 PLC PLC . MA 3 PLC E 1 402 402 PLC PLC . NA 3 PLC E 1 403 403 PLC PLC . OA 4 CL E 1 404 405 CL CL . PA 5 NA E 1 405 406 NA NA . QA 2 ACT E 1 406 407 ACT ACT . RA 6 LMT E 1 407 408 LMT LMT . SA 7 HOH A 1 501 210 HOH HOH . SA 7 HOH A 2 502 168 HOH HOH . SA 7 HOH A 3 503 140 HOH HOH . SA 7 HOH A 4 504 92 HOH HOH . SA 7 HOH A 5 505 145 HOH HOH . SA 7 HOH A 6 506 112 HOH HOH . SA 7 HOH A 7 507 38 HOH HOH . SA 7 HOH A 8 508 572 HOH HOH . SA 7 HOH A 9 509 203 HOH HOH . SA 7 HOH A 10 510 501 HOH HOH . SA 7 HOH A 11 511 205 HOH HOH . SA 7 HOH A 12 512 577 HOH HOH . TA 7 HOH B 1 501 16 HOH HOH . TA 7 HOH B 2 502 19 HOH HOH . TA 7 HOH B 3 503 166 HOH HOH . TA 7 HOH B 4 504 183 HOH HOH . TA 7 HOH B 5 505 26 HOH HOH . TA 7 HOH B 6 506 13 HOH HOH . TA 7 HOH B 7 507 111 HOH HOH . TA 7 HOH B 8 508 121 HOH HOH . TA 7 HOH B 9 509 146 HOH HOH . TA 7 HOH B 10 510 143 HOH HOH . TA 7 HOH B 11 511 197 HOH HOH . TA 7 HOH B 12 512 105 HOH HOH . TA 7 HOH B 13 513 28 HOH HOH . TA 7 HOH B 14 514 136 HOH HOH . TA 7 HOH B 15 515 559 HOH HOH . TA 7 HOH B 16 516 194 HOH HOH . TA 7 HOH B 17 517 206 HOH HOH . TA 7 HOH B 18 518 501 HOH HOH . TA 7 HOH B 19 519 81 HOH HOH . UA 7 HOH C 1 501 163 HOH HOH . UA 7 HOH C 2 502 132 HOH HOH . UA 7 HOH C 3 503 129 HOH HOH . UA 7 HOH C 4 504 510 HOH HOH . UA 7 HOH C 5 505 177 HOH HOH . UA 7 HOH C 6 506 118 HOH HOH . UA 7 HOH C 7 507 551 HOH HOH . UA 7 HOH C 8 508 409 HOH HOH . UA 7 HOH C 9 509 15 HOH HOH . UA 7 HOH C 10 510 35 HOH HOH . UA 7 HOH C 11 511 21 HOH HOH . UA 7 HOH C 12 512 209 HOH HOH . UA 7 HOH C 13 513 521 HOH HOH . UA 7 HOH C 14 514 549 HOH HOH . UA 7 HOH C 15 515 95 HOH HOH . UA 7 HOH C 16 516 139 HOH HOH . VA 7 HOH D 1 501 11 HOH HOH . VA 7 HOH D 2 502 59 HOH HOH . VA 7 HOH D 3 503 130 HOH HOH . VA 7 HOH D 4 504 526 HOH HOH . VA 7 HOH D 5 505 17 HOH HOH . VA 7 HOH D 6 506 131 HOH HOH . VA 7 HOH D 7 507 195 HOH HOH . VA 7 HOH D 8 508 410 HOH HOH . VA 7 HOH D 9 509 86 HOH HOH . VA 7 HOH D 10 510 154 HOH HOH . VA 7 HOH D 11 511 192 HOH HOH . VA 7 HOH D 12 512 120 HOH HOH . VA 7 HOH D 13 513 539 HOH HOH . VA 7 HOH D 14 514 207 HOH HOH . VA 7 HOH D 15 515 37 HOH HOH . VA 7 HOH D 16 516 501 HOH HOH . WA 7 HOH E 1 501 176 HOH HOH . WA 7 HOH E 2 502 29 HOH HOH . WA 7 HOH E 3 503 208 HOH HOH . WA 7 HOH E 4 504 103 HOH HOH . WA 7 HOH E 5 505 174 HOH HOH . WA 7 HOH E 6 506 31 HOH HOH . WA 7 HOH E 7 507 57 HOH HOH . WA 7 HOH E 8 508 65 HOH HOH . WA 7 HOH E 9 509 501 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLC . . . Y 3 49.607 -58.36 38.917 1 102.63 ? C1 PLC 404 C 1 HETATM 2 C C2 PLC . . . Y 3 50.612 -57.348 39.399 1 94.46 ? C2 PLC 404 C 1 HETATM 3 C C3 PLC . . . Y 3 50.362 -57.009 40.846 1 89.98 ? C3 PLC 404 C 1 HETATM 4 C C4 PLC . . . Y 3 46.099 -60.407 37.984 1 117.64 ? C4 PLC 404 C 1 HETATM 5 C C5 PLC . . . Y 3 45.9 -61.691 38.768 1 118.91 ? C5 PLC 404 C 1 HETATM 6 C C6 PLC . . . Y 3 44.517 -63.558 39.554 1 121.05 ? C6 PLC 404 C 1 HETATM 7 C C7 PLC . . . Y 3 43.665 -61.304 39.828 1 118.52 ? C7 PLC 404 C 1 HETATM 8 C C8 PLC . . . Y 3 43.741 -62.31 37.61 1 119.64 ? C8 PLC 404 C 1 HETATM 9 C C' PLC . . . Y 3 52.951 -57.243 38.714 1 85.87 ? C' PLC 404 C 1 HETATM 10 C C1' PLC . . . Y 3 54.304 -57.784 39.09 1 75.62 ? C1' PLC 404 C 1 HETATM 11 C C2' PLC . . . Y 3 55.378 -56.728 39.344 1 65.11 ? C2' PLC 404 C 1 HETATM 12 C C3' PLC . . . Y 3 55.293 -56.075 40.717 1 57.28 ? C3' PLC 404 C 1 HETATM 13 C C4' PLC . . . Y 3 56.45 -55.133 41.029 1 50.93 ? C4' PLC 404 C 1 HETATM 14 C C5' PLC . . . Y 3 56.337 -54.383 42.352 1 46.29 ? C5' PLC 404 C 1 HETATM 15 C C6' PLC . . . Y 3 57.583 -53.579 42.711 1 44.49 ? C6' PLC 404 C 1 HETATM 16 C C7' PLC . . . Y 3 57.616 -52.968 44.106 1 39.31 ? C7' PLC 404 C 1 HETATM 17 C CB PLC . . . Y 3 51.549 -55.887 42.6 1 77.76 ? CB PLC 404 C 1 HETATM 18 C C1B PLC . . . Y 3 52.564 -54.814 42.854 1 70.33 ? C1B PLC 404 C 1 HETATM 19 C C2B PLC . . . Y 3 52.892 -54.562 44.316 1 65.81 ? C2B PLC 404 C 1 HETATM 20 C C3B PLC . . . Y 3 53.46 -53.174 44.548 1 61.08 ? C3B PLC 404 C 1 HETATM 21 C C4B PLC . . . Y 3 54.033 -52.989 45.933 1 60.33 ? C4B PLC 404 C 1 HETATM 22 C C5B PLC . . . Y 3 53.789 -51.618 46.527 1 58.29 ? C5B PLC 404 C 1 HETATM 23 C C6B PLC . . . Y 3 54.214 -51.532 47.979 1 58.69 ? C6B PLC 404 C 1 HETATM 24 C C7B PLC . . . Y 3 53.957 -50.161 48.577 1 59.49 ? C7B PLC 404 C 1 HETATM 25 O O' PLC . . . Y 3 52.765 -56.323 37.958 1 87.83 ? O' PLC 404 C 1 HETATM 26 O OB PLC . . . Y 3 50.962 -56.501 43.448 1 78.96 ? OB PLC 404 C 1 HETATM 27 O O2 PLC . . . Y 3 51.96 -57.926 39.333 1 92.66 ? O2 PLC 404 C 1 HETATM 28 O O3 PLC . . . Y 3 51.364 -56.061 41.287 1 84.99 ? O3 PLC 404 C 1 HETATM 29 O O1P PLC . . . Y 3 46.812 -57.571 37.472 1 116.77 ? O1P PLC 404 C 1 HETATM 30 O O2P PLC . . . Y 3 47.734 -58.989 35.692 1 119.22 ? O2P PLC 404 C 1 HETATM 31 O O3P PLC . . . Y 3 49.32 -58.156 37.514 1 110.21 ? O3P PLC 404 C 1 HETATM 32 O O4P PLC . . . Y 3 47.513 -60.083 37.98 1 118.29 ? O4P PLC 404 C 1 HETATM 33 N N PLC . . . Y 3 44.455 -62.2 38.927 1 119.59 ? N PLC 404 C 1 HETATM 34 P P PLC . . . Y 3 47.785 -58.66 37.197 1 117.45 ? P PLC 404 C 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 34 #