data_6F19 # _model_server_result.job_id S4berduolrLZlhW01JbThQ _model_server_result.datetime_utc '2024-11-15 22:29:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6f19 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 6F19 # _exptl.entry_id 6F19 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6F19 _cell.length_a 39.81 _cell.length_b 47.77 _cell.length_c 77.39 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6F19 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 92 A SER 92 1_555 A N MHS 93 A MHS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 A C MHS 93 A MHS 93 1_555 A N ALA 94 A ALA 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? metalc ? metalc1 A NE2 MHS 93 A MHS 93 1_555 C FE HEM . A HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 6F19 _atom_sites.fract_transf_matrix[1][1] 0.025119 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020934 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012922 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EEE A 1 201 1 EEE DRG . C 3 HEM A 1 202 1 HEM HEM . D 4 HOH A 1 301 48 HOH HOH . D 4 HOH A 2 302 145 HOH HOH . D 4 HOH A 3 303 44 HOH HOH . D 4 HOH A 4 304 50 HOH HOH . D 4 HOH A 5 305 114 HOH HOH . D 4 HOH A 6 306 107 HOH HOH . D 4 HOH A 7 307 126 HOH HOH . D 4 HOH A 8 308 17 HOH HOH . D 4 HOH A 9 309 68 HOH HOH . D 4 HOH A 10 310 30 HOH HOH . D 4 HOH A 11 311 138 HOH HOH . D 4 HOH A 12 312 118 HOH HOH . D 4 HOH A 13 313 27 HOH HOH . D 4 HOH A 14 314 93 HOH HOH . D 4 HOH A 15 315 19 HOH HOH . D 4 HOH A 16 316 26 HOH HOH . D 4 HOH A 17 317 4 HOH HOH . D 4 HOH A 18 318 34 HOH HOH . D 4 HOH A 19 319 41 HOH HOH . D 4 HOH A 20 320 18 HOH HOH . D 4 HOH A 21 321 119 HOH HOH . D 4 HOH A 22 322 31 HOH HOH . D 4 HOH A 23 323 36 HOH HOH . D 4 HOH A 24 324 88 HOH HOH . D 4 HOH A 25 325 2 HOH HOH . D 4 HOH A 26 326 12 HOH HOH . D 4 HOH A 27 327 33 HOH HOH . D 4 HOH A 28 328 57 HOH HOH . D 4 HOH A 29 329 67 HOH HOH . D 4 HOH A 30 330 22 HOH HOH . D 4 HOH A 31 331 87 HOH HOH . D 4 HOH A 32 332 7 HOH HOH . D 4 HOH A 33 333 73 HOH HOH . D 4 HOH A 34 334 37 HOH HOH . D 4 HOH A 35 335 9 HOH HOH . D 4 HOH A 36 336 54 HOH HOH . D 4 HOH A 37 337 35 HOH HOH . D 4 HOH A 38 338 98 HOH HOH . D 4 HOH A 39 339 61 HOH HOH . D 4 HOH A 40 340 92 HOH HOH . D 4 HOH A 41 341 25 HOH HOH . D 4 HOH A 42 342 47 HOH HOH . D 4 HOH A 43 343 117 HOH HOH . D 4 HOH A 44 344 42 HOH HOH . D 4 HOH A 45 345 6 HOH HOH . D 4 HOH A 46 346 142 HOH HOH . D 4 HOH A 47 347 79 HOH HOH . D 4 HOH A 48 348 84 HOH HOH . D 4 HOH A 49 349 135 HOH HOH . D 4 HOH A 50 350 66 HOH HOH . D 4 HOH A 51 351 111 HOH HOH . D 4 HOH A 52 352 122 HOH HOH . D 4 HOH A 53 353 140 HOH HOH . D 4 HOH A 54 354 56 HOH HOH . D 4 HOH A 55 355 141 HOH HOH . D 4 HOH A 56 356 21 HOH HOH . D 4 HOH A 57 357 65 HOH HOH . D 4 HOH A 58 358 40 HOH HOH . D 4 HOH A 59 359 28 HOH HOH . D 4 HOH A 60 360 15 HOH HOH . D 4 HOH A 61 361 110 HOH HOH . D 4 HOH A 62 362 39 HOH HOH . D 4 HOH A 63 363 59 HOH HOH . D 4 HOH A 64 364 23 HOH HOH . D 4 HOH A 65 365 13 HOH HOH . D 4 HOH A 66 366 24 HOH HOH . D 4 HOH A 67 367 11 HOH HOH . D 4 HOH A 68 368 123 HOH HOH . D 4 HOH A 69 369 72 HOH HOH . D 4 HOH A 70 370 89 HOH HOH . D 4 HOH A 71 371 53 HOH HOH . D 4 HOH A 72 372 52 HOH HOH . D 4 HOH A 73 373 80 HOH HOH . D 4 HOH A 74 374 62 HOH HOH . D 4 HOH A 75 375 71 HOH HOH . D 4 HOH A 76 376 75 HOH HOH . D 4 HOH A 77 377 103 HOH HOH . D 4 HOH A 78 378 8 HOH HOH . D 4 HOH A 79 379 5 HOH HOH . D 4 HOH A 80 380 90 HOH HOH . D 4 HOH A 81 381 46 HOH HOH . D 4 HOH A 82 382 45 HOH HOH . D 4 HOH A 83 383 58 HOH HOH . D 4 HOH A 84 384 20 HOH HOH . D 4 HOH A 85 385 63 HOH HOH . D 4 HOH A 86 386 14 HOH HOH . D 4 HOH A 87 387 129 HOH HOH . D 4 HOH A 88 388 38 HOH HOH . D 4 HOH A 89 389 112 HOH HOH . D 4 HOH A 90 390 43 HOH HOH . D 4 HOH A 91 391 95 HOH HOH . D 4 HOH A 92 392 116 HOH HOH . D 4 HOH A 93 393 51 HOH HOH . D 4 HOH A 94 394 83 HOH HOH . D 4 HOH A 95 395 86 HOH HOH . D 4 HOH A 96 396 64 HOH HOH . D 4 HOH A 97 397 125 HOH HOH . D 4 HOH A 98 398 124 HOH HOH . D 4 HOH A 99 399 109 HOH HOH . D 4 HOH A 100 400 134 HOH HOH . D 4 HOH A 101 401 49 HOH HOH . D 4 HOH A 102 402 136 HOH HOH . D 4 HOH A 103 403 133 HOH HOH . D 4 HOH A 104 404 55 HOH HOH . D 4 HOH A 105 405 94 HOH HOH . D 4 HOH A 106 406 106 HOH HOH . D 4 HOH A 107 407 96 HOH HOH . D 4 HOH A 108 408 128 HOH HOH . D 4 HOH A 109 409 105 HOH HOH . D 4 HOH A 110 410 146 HOH HOH . D 4 HOH A 111 411 132 HOH HOH . D 4 HOH A 112 412 137 HOH HOH . D 4 HOH A 113 413 85 HOH HOH . D 4 HOH A 114 414 144 HOH HOH . D 4 HOH A 115 415 100 HOH HOH . D 4 HOH A 116 416 104 HOH HOH . D 4 HOH A 117 417 115 HOH HOH . D 4 HOH A 118 418 139 HOH HOH . D 4 HOH A 119 419 130 HOH HOH . D 4 HOH A 120 420 102 HOH HOH . D 4 HOH A 121 421 97 HOH HOH . D 4 HOH A 122 422 127 HOH HOH . D 4 HOH A 123 423 82 HOH HOH . D 4 HOH A 124 424 121 HOH HOH . D 4 HOH A 125 425 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 -6.371 8.687 -8.919 0.9 34.27 ? CHA HEM 202 A 1 HETATM 2 C CHB HEM . . . C 3 -4.942 6.486 -5.03 0.9 15.52 ? CHB HEM 202 A 1 HETATM 3 C CHC HEM . . . C 3 -4.602 2.429 -7.549 0.9 17.52 ? CHC HEM 202 A 1 HETATM 4 C CHD HEM . . . C 3 -6.089 4.678 -11.446 0.9 24.01 ? CHD HEM 202 A 1 HETATM 5 C C1A HEM . . . C 3 -6.029 8.472 -7.63 0.9 25.97 ? C1A HEM 202 A 1 HETATM 6 C C2A HEM . . . C 3 -5.958 9.473 -6.611 0.9 28.46 ? C2A HEM 202 A 1 HETATM 7 C C3A HEM . . . C 3 -5.553 8.825 -5.524 0.9 23.25 ? C3A HEM 202 A 1 HETATM 8 C C4A HEM . . . C 3 -5.338 7.48 -5.859 0.9 21.72 ? C4A HEM 202 A 1 HETATM 9 C CMA HEM . . . C 3 -5.344 9.436 -4.203 0.9 25.23 ? CMA HEM 202 A 1 HETATM 10 C CAA HEM . . . C 3 -6.261 10.977 -6.679 0.9 28.95 ? CAA HEM 202 A 1 HETATM 11 C CBA HEM . . . C 3 -7.71 11.251 -6.558 0.9 35.03 ? CBA HEM 202 A 1 HETATM 12 C CGA HEM . . . C 3 -8.234 12.68 -6.285 0.9 53.79 ? CGA HEM 202 A 1 HETATM 13 O O1A HEM . . . C 3 -7.535 13.699 -6.059 0.9 52.27 ? O1A HEM 202 A 1 HETATM 14 O O2A HEM . . . C 3 -9.464 12.82 -6.301 0.9 51.19 ? O2A HEM 202 A 1 HETATM 15 C C1B HEM . . . C 3 -4.724 5.183 -5.41 0.9 18.6 ? C1B HEM 202 A 1 HETATM 16 C C2B HEM . . . C 3 -4.224 4.224 -4.511 0.9 16.96 ? C2B HEM 202 A 1 HETATM 17 C C3B HEM . . . C 3 -4.104 3.098 -5.189 0.9 15.74 ? C3B HEM 202 A 1 HETATM 18 C C4B HEM . . . C 3 -4.556 3.387 -6.552 0.9 20.62 ? C4B HEM 202 A 1 HETATM 19 C CMB HEM . . . C 3 -3.893 4.472 -3.089 0.9 19.58 ? CMB HEM 202 A 1 HETATM 20 C CAB HEM . . . C 3 -3.618 1.805 -4.8 0.9 14.82 ? CAB HEM 202 A 1 HETATM 21 C CBB HEM . . . C 3 -3.049 1.531 -3.684 0.9 21.07 ? CBB HEM 202 A 1 HETATM 22 C C1C HEM . . . C 3 -4.969 2.637 -8.858 0.9 18.3 ? C1C HEM 202 A 1 HETATM 23 C C2C HEM . . . C 3 -4.907 1.731 -9.932 0.9 16.74 ? C2C HEM 202 A 1 HETATM 24 C C3C HEM . . . C 3 -5.345 2.405 -11.044 0.9 17.96 ? C3C HEM 202 A 1 HETATM 25 C C4C HEM . . . C 3 -5.638 3.697 -10.622 0.9 18.92 ? C4C HEM 202 A 1 HETATM 26 C CMC HEM . . . C 3 -4.439 0.322 -9.809 0.9 22.44 ? CMC HEM 202 A 1 HETATM 27 C CAC HEM . . . C 3 -5.45 2.034 -12.436 0.9 18.73 ? CAC HEM 202 A 1 HETATM 28 C CBC HEM . . . C 3 -4.932 0.972 -12.895 0.9 25.61 ? CBC HEM 202 A 1 HETATM 29 C C1D HEM . . . C 3 -6.277 5.974 -11.016 0.9 28.7 ? C1D HEM 202 A 1 HETATM 30 C C2D HEM . . . C 3 -6.605 6.992 -11.977 0.9 42.47 ? C2D HEM 202 A 1 HETATM 31 C C3D HEM . . . C 3 -6.685 8.106 -11.263 0.9 46.13 ? C3D HEM 202 A 1 HETATM 32 C C4D HEM . . . C 3 -6.385 7.739 -9.896 0.9 34.2 ? C4D HEM 202 A 1 HETATM 33 C CMD HEM . . . C 3 -6.799 6.786 -13.444 0.9 39.11 ? CMD HEM 202 A 1 HETATM 34 C CAD HEM . . . C 3 -6.962 9.531 -11.688 0.9 46.11 ? CAD HEM 202 A 1 HETATM 35 C CBD HEM . . . C 3 -5.576 10.165 -11.984 0.9 43.96 ? CBD HEM 202 A 1 HETATM 36 C CGD HEM . . . C 3 -5.61 10.892 -13.286 0.9 53.55 ? CGD HEM 202 A 1 HETATM 37 O O1D HEM . . . C 3 -6.306 10.425 -14.186 0.9 58.85 ? O1D HEM 202 A 1 HETATM 38 O O2D HEM . . . C 3 -4.97 11.943 -13.457 0.9 51.42 ? O2D HEM 202 A 1 HETATM 39 N NA HEM . . . C 3 -5.642 7.288 -7.158 0.9 24.55 ? NA HEM 202 A 1 HETATM 40 N NB HEM . . . C 3 -4.904 4.638 -6.569 0.9 19.27 ? NB HEM 202 A 1 HETATM 41 N NC HEM . . . C 3 -5.388 3.809 -9.3 0.9 19.37 ? NC HEM 202 A 1 HETATM 42 N ND HEM . . . C 3 -6.167 6.475 -9.807 0.9 26.71 ? ND HEM 202 A 1 HETATM 43 FE FE HEM . . . C 3 -5.701 5.605 -8.218 0.9 21.23 ? FE HEM 202 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 39 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 452 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #