data_6F28 # _model_server_result.job_id c2oYLPu-V6xrL41789CVwg _model_server_result.datetime_utc '2024-10-19 20:10:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6f28 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 6F28 # _exptl.entry_id 6F28 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 254.243 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S})-2-azanyl-3-[6-methyl-2,4-bis(oxidanylidene)-5,7-dihydropyrrolo[3,4-d]pyrimidin-1-yl]propanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6F28 _cell.length_a 131.039 _cell.length_b 56.214 _cell.length_c 87.189 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6F28 _symmetry.cell_setting ? _symmetry.Int_Tables_number 17 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,N 1 1 B,G,H,I,J,K,L,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 203 A CYS 203 1_555 A SG CYS 257 A CYS 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 B SG CYS 203 B CYS 203 1_555 B SG CYS 257 B CYS 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 A ND1 HIS 82 A HIS 82 1_555 I ZN ZN . B ZN 303 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc2 A ND1 HIS 95 A HIS 95 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc3 A OE2 GLU 98 A GLU 98 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc4 A OE2 GLU 196 A GLU 196 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.786 ? metalc ? metalc5 A NE2 HIS 245 A HIS 245 1_555 C ZN ZN . A ZN 301 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc6 A NZ LYS 248 A LYS 248 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc7 A OE2 GLU 249 A GLU 249 1_555 C ZN ZN . A ZN 301 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc8 B OE1 GLU 44 B GLU 44 1_555 J ZN ZN . B ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc9 B NE2 HIS 47 B HIS 47 1_555 J ZN ZN . B ZN 304 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc10 B ND1 HIS 82 B HIS 82 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc11 B ND1 HIS 82 B HIS 82 1_555 H ZN ZN . B ZN 302 4_535 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc12 B NE2 HIS 95 B HIS 95 1_555 I ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc13 B NZ LYS 99 B LYS 99 1_555 I ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc14 B OD1 ASP 242 B ASP 242 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc15 B OD2 ASP 242 B ASP 242 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc16 B NZ LYS 243 B LYS 243 1_555 J ZN ZN . B ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc17 B ND1 HIS 245 B HIS 245 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc18 H ZN ZN . B ZN 302 1_555 O O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc19 H ZN ZN . B ZN 302 1_555 O O HOH . B HOH 401 4_535 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? # _chem_comp.formula 'C10 H14 N4 O4' _chem_comp.formula_weight 254.243 _chem_comp.id CG8 _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S})-2-azanyl-3-[6-methyl-2,4-bis(oxidanylidene)-5,7-dihydropyrrolo[3,4-d]pyrimidin-1-yl]propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 CG8 doub 70 n n C2 N2 CG8 sing 71 n n C2 N1 CG8 sing 72 n n N2 C3 CG8 sing 73 n n O4 C10 CG8 doub 74 n n O2 C3 CG8 doub 75 n n C3 C4 CG8 sing 76 n n N1 C5 CG8 sing 77 n n N1 C1 CG8 sing 78 n n C5 C9 CG8 sing 79 n n C10 C9 CG8 sing 80 n n C10 O3 CG8 sing 81 n n C9 N4 CG8 sing 82 n n C1 C4 CG8 doub 83 n n C1 C6 CG8 sing 84 n n C4 C7 CG8 sing 85 n n C6 N3 CG8 sing 86 n n C7 N3 CG8 sing 87 n n N3 C8 CG8 sing 88 n n C6 H2 CG8 sing 89 n n C6 H3 CG8 sing 90 n n C7 H4 CG8 sing 91 n n C7 H5 CG8 sing 92 n n C9 H6 CG8 sing 93 n n C8 H7 CG8 sing 94 n n C8 H8 CG8 sing 95 n n C8 H9 CG8 sing 96 n n N2 H10 CG8 sing 97 n n C5 H11 CG8 sing 98 n n C5 H12 CG8 sing 99 n n N4 H13 CG8 sing 100 n n N4 H14 CG8 sing 101 n n O3 H16 CG8 sing 102 n n # _atom_sites.entry_id 6F28 _atom_sites.fract_transf_matrix[1][1] 0.007631 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011469 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 301 3 ZN ZN . D 3 CG8 A 1 302 3 CG8 N89 . E 4 CL A 1 303 1 CL CL . F 4 CL A 1 304 2 CL CL . G 2 ZN B 1 301 2 ZN ZN . H 2 ZN B 1 302 4 ZN ZN . I 2 ZN B 1 303 5 ZN ZN . J 2 ZN B 1 304 6 ZN ZN . K 3 CG8 B 1 305 4 CG8 N89 . L 5 SO4 B 1 306 2 SO4 SO4 . M 4 CL B 1 307 3 CL CL . N 6 HOH A 1 401 25 HOH HOH . N 6 HOH A 2 402 20 HOH HOH . N 6 HOH A 3 403 183 HOH HOH . N 6 HOH A 4 404 185 HOH HOH . N 6 HOH A 5 405 31 HOH HOH . N 6 HOH A 6 406 5 HOH HOH . N 6 HOH A 7 407 182 HOH HOH . N 6 HOH A 8 408 4 HOH HOH . N 6 HOH A 9 409 88 HOH HOH . N 6 HOH A 10 410 2 HOH HOH . N 6 HOH A 11 411 134 HOH HOH . N 6 HOH A 12 412 188 HOH HOH . N 6 HOH A 13 413 30 HOH HOH . N 6 HOH A 14 414 7 HOH HOH . N 6 HOH A 15 415 11 HOH HOH . N 6 HOH A 16 416 8 HOH HOH . N 6 HOH A 17 417 43 HOH HOH . N 6 HOH A 18 418 3 HOH HOH . N 6 HOH A 19 419 77 HOH HOH . N 6 HOH A 20 420 173 HOH HOH . N 6 HOH A 21 421 191 HOH HOH . N 6 HOH A 22 422 44 HOH HOH . N 6 HOH A 23 423 187 HOH HOH . N 6 HOH A 24 424 162 HOH HOH . N 6 HOH A 25 425 181 HOH HOH . N 6 HOH A 26 426 146 HOH HOH . N 6 HOH A 27 427 184 HOH HOH . O 6 HOH B 1 401 170 HOH HOH . O 6 HOH B 2 402 201 HOH HOH . O 6 HOH B 3 403 1 HOH HOH . O 6 HOH B 4 404 15 HOH HOH . O 6 HOH B 5 405 28 HOH HOH . O 6 HOH B 6 406 12 HOH HOH . O 6 HOH B 7 407 200 HOH HOH . O 6 HOH B 8 408 14 HOH HOH . O 6 HOH B 9 409 13 HOH HOH . O 6 HOH B 10 410 169 HOH HOH . O 6 HOH B 11 411 65 HOH HOH . O 6 HOH B 12 412 140 HOH HOH . O 6 HOH B 13 413 102 HOH HOH . O 6 HOH B 14 414 178 HOH HOH . O 6 HOH B 15 415 192 HOH HOH . O 6 HOH B 16 416 78 HOH HOH . O 6 HOH B 17 417 107 HOH HOH . O 6 HOH B 18 418 42 HOH HOH . O 6 HOH B 19 419 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 CG8 . . . D 3 -44.6 -22.997 -20.609 1 49.73 ? O1 CG8 302 A 1 HETATM 2 N N3 CG8 . . . D 3 -48.345 -21.495 -16.32 1 55.66 ? N3 CG8 302 A 1 HETATM 3 C C6 CG8 . . . D 3 -47.111 -20.978 -16.941 1 54.32 ? C6 CG8 302 A 1 HETATM 4 C C7 CG8 . . . D 3 -48.71 -22.786 -16.936 1 53.35 ? C7 CG8 302 A 1 HETATM 5 C C10 CG8 . . . D 3 -42.268 -20.217 -18.43 1 44.76 ? C10 CG8 302 A 1 HETATM 6 C C9 CG8 . . . D 3 -43.416 -21.181 -18.1 1 46.25 ? C9 CG8 302 A 1 HETATM 7 C C8 CG8 . . . D 3 -48.311 -21.499 -14.863 1 60.96 ? C8 CG8 302 A 1 HETATM 8 N N2 CG8 . . . D 3 -46.463 -24.002 -19.778 1 51.95 ? N2 CG8 302 A 1 HETATM 9 N N1 CG8 . . . D 3 -45.7 -21.92 -18.863 1 46.96 ? N1 CG8 302 A 1 HETATM 10 C C5 CG8 . . . D 3 -44.736 -20.843 -18.855 1 43.8 ? C5 CG8 302 A 1 HETATM 11 C C4 CG8 . . . D 3 -47.664 -22.989 -17.988 1 52.67 ? C4 CG8 302 A 1 HETATM 12 C C3 CG8 . . . D 3 -47.56 -24.099 -18.915 1 52.25 ? C3 CG8 302 A 1 HETATM 13 C C2 CG8 . . . D 3 -45.525 -22.969 -19.797 1 49.97 ? C2 CG8 302 A 1 HETATM 14 C C1 CG8 . . . D 3 -46.78 -21.999 -17.998 1 52.39 ? C1 CG8 302 A 1 HETATM 15 N N4 CG8 . . . D 3 -43.612 -21.183 -16.641 1 48.94 ? N4 CG8 302 A 1 HETATM 16 O O2 CG8 . . . D 3 -48.327 -25.058 -18.977 1 54.27 ? O2 CG8 302 A 1 HETATM 17 O O3 CG8 . . . D 3 -41.634 -19.7 -17.484 1 45.88 ? O3 CG8 302 A 1 HETATM 18 O O4 CG8 . . . D 3 -42.016 -19.989 -19.63 1 44.51 ? O4 CG8 302 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 177 _model_server_stats.create_model_time_ms 60 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 18 #