data_6F28
#
_model_server_result.job_id            EARzeT8p3e1wCt-hNh0SGQ 
_model_server_result.datetime_utc      '2025-01-10 08:18:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6f28 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":305}' 
#
_entry.id    6F28 
#
_exptl.entry_id    6F28 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              254.243 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2~{S})-2-azanyl-3-[6-methyl-2,4-bis(oxidanylidene)-5,7-dihydropyrrolo[3,4-d]pyrimidin-1-yl]propanoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6F28 
_cell.length_a            131.039 
_cell.length_b            56.214 
_cell.length_c            87.189 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6F28 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        17 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,N 1 1 
B,G,H,I,J,K,L,M,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 203 A CYS 203 1_555 A SG CYS 257 A CYS 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 B SG CYS 203 B CYS 203 1_555 B SG CYS 257 B CYS 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc1 A ND1 HIS 82 A HIS 82 1_555 I ZN ZN . B ZN 303 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc2 A ND1 HIS 95 A HIS 95 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc3 A OE2 GLU 98 A GLU 98 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? 
metalc ? metalc4 A OE2 GLU 196 A GLU 196 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.786 ? 
metalc ? metalc5 A NE2 HIS 245 A HIS 245 1_555 C ZN ZN . A ZN 301 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc6 A NZ LYS 248 A LYS 248 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc7 A OE2 GLU 249 A GLU 249 1_555 C ZN ZN . A ZN 301 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc8 B OE1 GLU 44 B GLU 44 1_555 J ZN ZN . B ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? 
metalc ? metalc9 B NE2 HIS 47 B HIS 47 1_555 J ZN ZN . B ZN 304 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? 
metalc ? metalc10 B ND1 HIS 82 B HIS 82 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc11 B ND1 HIS 82 B HIS 82 1_555 H ZN ZN . B ZN 302 4_535 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc12 B NE2 HIS 95 B HIS 95 1_555 I ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc13 B NZ LYS 99 B LYS 99 1_555 I ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc14 B OD1 ASP 242 B ASP 242 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? 
metalc ? metalc15 B OD2 ASP 242 B ASP 242 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc16 B NZ LYS 243 B LYS 243 1_555 J ZN ZN . B ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
metalc ? metalc17 B ND1 HIS 245 B HIS 245 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc18 H ZN ZN . B ZN 302 1_555 O O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc19 H ZN ZN . B ZN 302 1_555 O O HOH . B HOH 401 4_535 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
#
_chem_comp.formula           'C10 H14 N4 O4' 
_chem_comp.formula_weight    254.243 
_chem_comp.id                CG8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2~{S})-2-azanyl-3-[6-methyl-2,4-bis(oxidanylidene)-5,7-dihydropyrrolo[3,4-d]pyrimidin-1-yl]propanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C2 CG8 doub 70 n n 
C2 N2 CG8 sing 71 n n 
C2 N1 CG8 sing 72 n n 
N2 C3 CG8 sing 73 n n 
O4 C10 CG8 doub 74 n n 
O2 C3 CG8 doub 75 n n 
C3 C4 CG8 sing 76 n n 
N1 C5 CG8 sing 77 n n 
N1 C1 CG8 sing 78 n n 
C5 C9 CG8 sing 79 n n 
C10 C9 CG8 sing 80 n n 
C10 O3 CG8 sing 81 n n 
C9 N4 CG8 sing 82 n n 
C1 C4 CG8 doub 83 n n 
C1 C6 CG8 sing 84 n n 
C4 C7 CG8 sing 85 n n 
C6 N3 CG8 sing 86 n n 
C7 N3 CG8 sing 87 n n 
N3 C8 CG8 sing 88 n n 
C6 H2 CG8 sing 89 n n 
C6 H3 CG8 sing 90 n n 
C7 H4 CG8 sing 91 n n 
C7 H5 CG8 sing 92 n n 
C9 H6 CG8 sing 93 n n 
C8 H7 CG8 sing 94 n n 
C8 H8 CG8 sing 95 n n 
C8 H9 CG8 sing 96 n n 
N2 H10 CG8 sing 97 n n 
C5 H11 CG8 sing 98 n n 
C5 H12 CG8 sing 99 n n 
N4 H13 CG8 sing 100 n n 
N4 H14 CG8 sing 101 n n 
O3 H16 CG8 sing 102 n n 
#
_atom_sites.entry_id                     6F28 
_atom_sites.fract_transf_matrix[1][1]    0.007631 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017789 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011469 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 301 3 ZN ZN . 
D 3 CG8 A 1 302 3 CG8 N89 . 
E 4 CL A 1 303 1 CL CL . 
F 4 CL A 1 304 2 CL CL . 
G 2 ZN B 1 301 2 ZN ZN . 
H 2 ZN B 1 302 4 ZN ZN . 
I 2 ZN B 1 303 5 ZN ZN . 
J 2 ZN B 1 304 6 ZN ZN . 
K 3 CG8 B 1 305 4 CG8 N89 . 
L 5 SO4 B 1 306 2 SO4 SO4 . 
M 4 CL B 1 307 3 CL CL . 
N 6 HOH A 1 401 25 HOH HOH . 
N 6 HOH A 2 402 20 HOH HOH . 
N 6 HOH A 3 403 183 HOH HOH . 
N 6 HOH A 4 404 185 HOH HOH . 
N 6 HOH A 5 405 31 HOH HOH . 
N 6 HOH A 6 406 5 HOH HOH . 
N 6 HOH A 7 407 182 HOH HOH . 
N 6 HOH A 8 408 4 HOH HOH . 
N 6 HOH A 9 409 88 HOH HOH . 
N 6 HOH A 10 410 2 HOH HOH . 
N 6 HOH A 11 411 134 HOH HOH . 
N 6 HOH A 12 412 188 HOH HOH . 
N 6 HOH A 13 413 30 HOH HOH . 
N 6 HOH A 14 414 7 HOH HOH . 
N 6 HOH A 15 415 11 HOH HOH . 
N 6 HOH A 16 416 8 HOH HOH . 
N 6 HOH A 17 417 43 HOH HOH . 
N 6 HOH A 18 418 3 HOH HOH . 
N 6 HOH A 19 419 77 HOH HOH . 
N 6 HOH A 20 420 173 HOH HOH . 
N 6 HOH A 21 421 191 HOH HOH . 
N 6 HOH A 22 422 44 HOH HOH . 
N 6 HOH A 23 423 187 HOH HOH . 
N 6 HOH A 24 424 162 HOH HOH . 
N 6 HOH A 25 425 181 HOH HOH . 
N 6 HOH A 26 426 146 HOH HOH . 
N 6 HOH A 27 427 184 HOH HOH . 
O 6 HOH B 1 401 170 HOH HOH . 
O 6 HOH B 2 402 201 HOH HOH . 
O 6 HOH B 3 403 1 HOH HOH . 
O 6 HOH B 4 404 15 HOH HOH . 
O 6 HOH B 5 405 28 HOH HOH . 
O 6 HOH B 6 406 12 HOH HOH . 
O 6 HOH B 7 407 200 HOH HOH . 
O 6 HOH B 8 408 14 HOH HOH . 
O 6 HOH B 9 409 13 HOH HOH . 
O 6 HOH B 10 410 169 HOH HOH . 
O 6 HOH B 11 411 65 HOH HOH . 
O 6 HOH B 12 412 140 HOH HOH . 
O 6 HOH B 13 413 102 HOH HOH . 
O 6 HOH B 14 414 178 HOH HOH . 
O 6 HOH B 15 415 192 HOH HOH . 
O 6 HOH B 16 416 78 HOH HOH . 
O 6 HOH B 17 417 107 HOH HOH . 
O 6 HOH B 18 418 42 HOH HOH . 
O 6 HOH B 19 419 149 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 CG8 . . . K 3 -17.478 -46.544 -24.98 1 66.61 ? O1 CG8 305 B 1 
HETATM 2 N N3 CG8 . . . K 3 -15.265 -41.303 -23.573 1 84.08 ? N3 CG8 305 B 1 
HETATM 3 C C6 CG8 . . . K 3 -15.578 -42.57 -22.894 1 79.22 ? C6 CG8 305 B 1 
HETATM 4 C C7 CG8 . . . K 3 -15.99 -41.237 -24.858 1 81.6 ? C7 CG8 305 B 1 
HETATM 5 C C10 CG8 . . . K 3 -17.41 -46.956 -20.818 1 68.68 ? C10 CG8 305 B 1 
HETATM 6 C C9 CG8 . . . K 3 -17.595 -45.848 -21.867 1 68.1 ? C9 CG8 305 B 1 
HETATM 7 C C8 CG8 . . . K 3 -15.353 -40.117 -22.737 1 88.68 ? C8 CG8 305 B 1 
HETATM 8 N N2 CG8 . . . K 3 -17.389 -44.577 -26.111 1 67.25 ? N2 CG8 305 B 1 
HETATM 9 N N1 CG8 . . . K 3 -16.544 -44.734 -23.87 1 66.82 ? N1 CG8 305 B 1 
HETATM 10 C C5 CG8 . . . K 3 -16.311 -45.542 -22.694 1 65.92 ? C5 CG8 305 B 1 
HETATM 11 C C4 CG8 . . . K 3 -16.452 -42.652 -25.062 1 74.96 ? C4 CG8 305 B 1 
HETATM 12 C C3 CG8 . . . K 3 -17.074 -43.222 -26.25 1 69.23 ? C3 CG8 305 B 1 
HETATM 13 C C2 CG8 . . . K 3 -17.156 -45.358 -24.98 1 66.4 ? C2 CG8 305 B 1 
HETATM 14 C C1 CG8 . . . K 3 -16.226 -43.391 -23.979 1 73.52 ? C1 CG8 305 B 1 
HETATM 15 N N4 CG8 . . . K 3 -18.082 -44.637 -21.186 1 69.6 ? N4 CG8 305 B 1 
HETATM 16 O O2 CG8 . . . K 3 -17.33 -42.631 -27.3 1 66.34 ? O2 CG8 305 B 1 
HETATM 17 O O3 CG8 . . . K 3 -17.414 -46.651 -19.606 1 69.49 ? O3 CG8 305 B 1 
HETATM 18 O O4 CG8 . . . K 3 -17.264 -48.128 -21.218 1 69.18 ? O4 CG8 305 B 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    43 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           18 
#