data_6F2J # _model_server_result.job_id vvrJMZN1vBlEBQ4J9uR8Xg _model_server_result.datetime_utc '2024-11-14 16:40:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6f2j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 6F2J # _exptl.entry_id 6F2J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6F2J _cell.length_a 77.915 _cell.length_b 77.915 _cell.length_c 37.738 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6F2J _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A O SER 60 A SER 60 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc2 A O CYS 64 A CYS 64 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc3 A OG SER 72 A SER 72 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc4 A O ARG 73 A ARG 73 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc5 A OD1 ASP 101 A ASP 101 1_555 F TB 7MT . A 7MT 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc6 A OD2 ASP 101 A ASP 101 1_555 F TB 7MT . A 7MT 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc7 B TB TB . A TB 201 1_555 G N09 7MT . A 7MT 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc8 B TB TB . A TB 201 1_555 G N23 7MT . A 7MT 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc9 B TB TB . A TB 201 1_555 H O HOH . A HOH 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.442 ? metalc ? metalc10 E NA NA . A NA 204 1_555 H O HOH . A HOH 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc11 E NA NA . A NA 204 1_555 H O HOH . A HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc12 F O25 7MT . A 7MT 205 1_555 G TB 7MT . A 7MT 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc13 G TB 7MT . A 7MT 206 1_555 H O HOH . A HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6F2J _atom_sites.fract_transf_matrix[1][1] 0.012834 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012834 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026498 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TB A 1 201 2 TB TB . C 3 CL A 1 202 1 CL CL . D 3 CL A 1 203 2 CL CL . E 4 NA A 1 204 1 NA NA . F 5 7MT A 1 205 2 7MT TAC . G 5 7MT A 1 206 3 7MT TAC . H 6 HOH A 1 301 34 HOH HOH . H 6 HOH A 2 302 102 HOH HOH . H 6 HOH A 3 303 86 HOH HOH . H 6 HOH A 4 304 172 HOH HOH . H 6 HOH A 5 305 135 HOH HOH . H 6 HOH A 6 306 117 HOH HOH . H 6 HOH A 7 307 245 HOH HOH . H 6 HOH A 8 308 162 HOH HOH . H 6 HOH A 9 309 13 HOH HOH . H 6 HOH A 10 310 153 HOH HOH . H 6 HOH A 11 311 171 HOH HOH . H 6 HOH A 12 312 45 HOH HOH . H 6 HOH A 13 313 37 HOH HOH . H 6 HOH A 14 314 111 HOH HOH . H 6 HOH A 15 315 63 HOH HOH . H 6 HOH A 16 316 92 HOH HOH . H 6 HOH A 17 317 113 HOH HOH . H 6 HOH A 18 318 78 HOH HOH . H 6 HOH A 19 319 79 HOH HOH . H 6 HOH A 20 320 252 HOH HOH . H 6 HOH A 21 321 246 HOH HOH . H 6 HOH A 22 322 87 HOH HOH . H 6 HOH A 23 323 250 HOH HOH . H 6 HOH A 24 324 71 HOH HOH . H 6 HOH A 25 325 18 HOH HOH . H 6 HOH A 26 326 9 HOH HOH . H 6 HOH A 27 327 68 HOH HOH . H 6 HOH A 28 328 13 HOH HOH . H 6 HOH A 29 329 2 HOH HOH . H 6 HOH A 30 330 82 HOH HOH . H 6 HOH A 31 331 100 HOH HOH . H 6 HOH A 32 332 18 HOH HOH . H 6 HOH A 33 333 199 HOH HOH . H 6 HOH A 34 334 81 HOH HOH . H 6 HOH A 35 335 104 HOH HOH . H 6 HOH A 36 336 253 HOH HOH . H 6 HOH A 37 337 51 HOH HOH . H 6 HOH A 38 338 30 HOH HOH . H 6 HOH A 39 339 4 HOH HOH . H 6 HOH A 40 340 33 HOH HOH . H 6 HOH A 41 341 42 HOH HOH . H 6 HOH A 42 342 142 HOH HOH . H 6 HOH A 43 343 214 HOH HOH . H 6 HOH A 44 344 23 HOH HOH . H 6 HOH A 45 345 35 HOH HOH . H 6 HOH A 46 346 196 HOH HOH . H 6 HOH A 47 347 90 HOH HOH . H 6 HOH A 48 348 123 HOH HOH . H 6 HOH A 49 349 147 HOH HOH . H 6 HOH A 50 350 29 HOH HOH . H 6 HOH A 51 351 66 HOH HOH . H 6 HOH A 52 352 80 HOH HOH . H 6 HOH A 53 353 20 HOH HOH . H 6 HOH A 54 354 6 HOH HOH . H 6 HOH A 55 355 247 HOH HOH . H 6 HOH A 56 356 15 HOH HOH . H 6 HOH A 57 357 105 HOH HOH . H 6 HOH A 58 358 27 HOH HOH . H 6 HOH A 59 359 155 HOH HOH . H 6 HOH A 60 360 22 HOH HOH . H 6 HOH A 61 361 96 HOH HOH . H 6 HOH A 62 362 138 HOH HOH . H 6 HOH A 63 363 143 HOH HOH . H 6 HOH A 64 364 85 HOH HOH . H 6 HOH A 65 365 213 HOH HOH . H 6 HOH A 66 366 72 HOH HOH . H 6 HOH A 67 367 28 HOH HOH . H 6 HOH A 68 368 43 HOH HOH . H 6 HOH A 69 369 97 HOH HOH . H 6 HOH A 70 370 3 HOH HOH . H 6 HOH A 71 371 195 HOH HOH . H 6 HOH A 72 372 251 HOH HOH . H 6 HOH A 73 373 46 HOH HOH . H 6 HOH A 74 374 10 HOH HOH . H 6 HOH A 75 375 41 HOH HOH . H 6 HOH A 76 376 21 HOH HOH . H 6 HOH A 77 377 58 HOH HOH . H 6 HOH A 78 378 52 HOH HOH . H 6 HOH A 79 379 248 HOH HOH . H 6 HOH A 80 380 190 HOH HOH . H 6 HOH A 81 381 129 HOH HOH . H 6 HOH A 82 382 103 HOH HOH . H 6 HOH A 83 383 69 HOH HOH . H 6 HOH A 84 384 39 HOH HOH . H 6 HOH A 85 385 98 HOH HOH . H 6 HOH A 86 386 53 HOH HOH . H 6 HOH A 87 387 75 HOH HOH . H 6 HOH A 88 388 116 HOH HOH . H 6 HOH A 89 389 21 HOH HOH . H 6 HOH A 90 390 77 HOH HOH . H 6 HOH A 91 391 8 HOH HOH . H 6 HOH A 92 392 11 HOH HOH . H 6 HOH A 93 393 94 HOH HOH . H 6 HOH A 94 394 50 HOH HOH . H 6 HOH A 95 395 16 HOH HOH . H 6 HOH A 96 396 64 HOH HOH . H 6 HOH A 97 397 70 HOH HOH . H 6 HOH A 98 398 74 HOH HOH . H 6 HOH A 99 399 169 HOH HOH . H 6 HOH A 100 400 32 HOH HOH . H 6 HOH A 101 401 11 HOH HOH . H 6 HOH A 102 402 48 HOH HOH . H 6 HOH A 103 403 130 HOH HOH . H 6 HOH A 104 404 261 HOH HOH . H 6 HOH A 105 405 73 HOH HOH . H 6 HOH A 106 406 67 HOH HOH . H 6 HOH A 107 407 14 HOH HOH . H 6 HOH A 108 408 3 HOH HOH . H 6 HOH A 109 409 4 HOH HOH . H 6 HOH A 110 410 93 HOH HOH . H 6 HOH A 111 411 62 HOH HOH . H 6 HOH A 112 412 38 HOH HOH . H 6 HOH A 113 413 65 HOH HOH . H 6 HOH A 114 414 61 HOH HOH . H 6 HOH A 115 415 26 HOH HOH . H 6 HOH A 116 416 25 HOH HOH . H 6 HOH A 117 417 59 HOH HOH . H 6 HOH A 118 418 7 HOH HOH . H 6 HOH A 119 419 17 HOH HOH . H 6 HOH A 120 420 55 HOH HOH . H 6 HOH A 121 421 56 HOH HOH . H 6 HOH A 122 422 141 HOH HOH . H 6 HOH A 123 423 60 HOH HOH . H 6 HOH A 124 424 83 HOH HOH . H 6 HOH A 125 425 10 HOH HOH . H 6 HOH A 126 426 54 HOH HOH . H 6 HOH A 127 427 24 HOH HOH . H 6 HOH A 128 428 108 HOH HOH . H 6 HOH A 129 429 159 HOH HOH . H 6 HOH A 130 430 139 HOH HOH . H 6 HOH A 131 431 95 HOH HOH . H 6 HOH A 132 432 166 HOH HOH . H 6 HOH A 133 433 146 HOH HOH . H 6 HOH A 134 434 258 HOH HOH . H 6 HOH A 135 435 19 HOH HOH . H 6 HOH A 136 436 210 HOH HOH . H 6 HOH A 137 437 192 HOH HOH . H 6 HOH A 138 438 16 HOH HOH . H 6 HOH A 139 439 91 HOH HOH . H 6 HOH A 140 440 134 HOH HOH . H 6 HOH A 141 441 44 HOH HOH . H 6 HOH A 142 442 5 HOH HOH . H 6 HOH A 143 443 40 HOH HOH . H 6 HOH A 144 444 12 HOH HOH . H 6 HOH A 145 445 126 HOH HOH . H 6 HOH A 146 446 175 HOH HOH . H 6 HOH A 147 447 12 HOH HOH . H 6 HOH A 148 448 224 HOH HOH . H 6 HOH A 149 449 121 HOH HOH . H 6 HOH A 150 450 76 HOH HOH . H 6 HOH A 151 451 202 HOH HOH . H 6 HOH A 152 452 31 HOH HOH . H 6 HOH A 153 453 7 HOH HOH . H 6 HOH A 154 454 106 HOH HOH . H 6 HOH A 155 455 1 HOH HOH . H 6 HOH A 156 456 168 HOH HOH . H 6 HOH A 157 457 237 HOH HOH . H 6 HOH A 158 458 176 HOH HOH . H 6 HOH A 159 459 137 HOH HOH . H 6 HOH A 160 460 120 HOH HOH . H 6 HOH A 161 461 128 HOH HOH . H 6 HOH A 162 462 8 HOH HOH . H 6 HOH A 163 463 112 HOH HOH . H 6 HOH A 164 464 194 HOH HOH . H 6 HOH A 165 465 193 HOH HOH . H 6 HOH A 166 466 6 HOH HOH . H 6 HOH A 167 467 84 HOH HOH . H 6 HOH A 168 468 228 HOH HOH . H 6 HOH A 169 469 149 HOH HOH . H 6 HOH A 170 470 179 HOH HOH . H 6 HOH A 171 471 158 HOH HOH . H 6 HOH A 172 472 148 HOH HOH . H 6 HOH A 173 473 204 HOH HOH . H 6 HOH A 174 474 132 HOH HOH . H 6 HOH A 175 475 115 HOH HOH . H 6 HOH A 176 476 200 HOH HOH . H 6 HOH A 177 477 19 HOH HOH . H 6 HOH A 178 478 15 HOH HOH . H 6 HOH A 179 479 212 HOH HOH . H 6 HOH A 180 480 244 HOH HOH . H 6 HOH A 181 481 173 HOH HOH . H 6 HOH A 182 482 47 HOH HOH . H 6 HOH A 183 483 49 HOH HOH . H 6 HOH A 184 484 22 HOH HOH . H 6 HOH A 185 485 170 HOH HOH . H 6 HOH A 186 486 144 HOH HOH . H 6 HOH A 187 487 234 HOH HOH . H 6 HOH A 188 488 9 HOH HOH . H 6 HOH A 189 489 260 HOH HOH . H 6 HOH A 190 490 57 HOH HOH . H 6 HOH A 191 491 101 HOH HOH . H 6 HOH A 192 492 17 HOH HOH . H 6 HOH A 193 493 254 HOH HOH . H 6 HOH A 194 494 5 HOH HOH . H 6 HOH A 195 495 14 HOH HOH . H 6 HOH A 196 496 140 HOH HOH . H 6 HOH A 197 497 89 HOH HOH . H 6 HOH A 198 498 20 HOH HOH . H 6 HOH A 199 499 119 HOH HOH . H 6 HOH A 200 500 125 HOH HOH . H 6 HOH A 201 501 2 HOH HOH . H 6 HOH A 202 502 107 HOH HOH . H 6 HOH A 203 503 216 HOH HOH . H 6 HOH A 204 504 180 HOH HOH . H 6 HOH A 205 505 262 HOH HOH . H 6 HOH A 206 506 191 HOH HOH . H 6 HOH A 207 507 232 HOH HOH . H 6 HOH A 208 508 88 HOH HOH . H 6 HOH A 209 509 124 HOH HOH . H 6 HOH A 210 510 259 HOH HOH . H 6 HOH A 211 511 109 HOH HOH . H 6 HOH A 212 512 127 HOH HOH . H 6 HOH A 213 513 114 HOH HOH . H 6 HOH A 214 514 157 HOH HOH . H 6 HOH A 215 515 118 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 7.592 _atom_site.Cartn_y 14.104 _atom_site.Cartn_z 31.557 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.29 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 204 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #