data_6F32 # _model_server_result.job_id rkgz2RFrEcojBfuK7W248A _model_server_result.datetime_utc '2024-11-14 06:32:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6f32 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":608}' # _entry.id 6F32 # _exptl.entry_id 6F32 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 144.168 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ethyl (2~{R})-2-methyl-3-oxidanylidene-butanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6F32 _cell.length_a 125.504 _cell.length_b 125.504 _cell.length_c 156.686 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6F32 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 118 A GLU 114 1_555 F CA CA . A CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.115 ? metalc ? metalc2 A OE1 GLU 118 A GLU 114 1_555 F CA CA . A CA 604 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.115 ? metalc ? metalc3 B O ILE 171 B ILE 167 1_555 O CA CA . B CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc4 B O GLY 305 B GLY 301 1_555 M CA CA . B CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.174 ? metalc ? metalc5 B O SER 342 B SER 338 1_555 N CA CA . B CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.106 ? # _chem_comp.formula 'C7 H12 O3' _chem_comp.formula_weight 144.168 _chem_comp.id CJE _chem_comp.mon_nstd_flag . _chem_comp.name 'ethyl (2~{R})-2-methyl-3-oxidanylidene-butanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAH CAG CJE sing 111 n n CAG OAF CJE sing 112 n n OAF CAD CJE sing 113 n n CAI CAC CJE sing 114 n n CAD CAC CJE sing 115 n n CAD OAE CJE doub 116 n n CAC CAB CJE sing 117 n n CAB OAJ CJE doub 118 n n CAB CAA CJE sing 119 n n CAH H1 CJE sing 120 n n CAH H2 CJE sing 121 n n CAH H3 CJE sing 122 n n CAG H4 CJE sing 123 n n CAG H5 CJE sing 124 n n CAC H6 CJE sing 125 n n CAI H7 CJE sing 126 n n CAI H8 CJE sing 127 n n CAI H9 CJE sing 128 n n CAA H10 CJE sing 129 n n CAA H11 CJE sing 130 n n CAA H12 CJE sing 131 n n # _atom_sites.entry_id 6F32 _atom_sites.fract_transf_matrix[1][1] 0.007968 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007968 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 601 601 FAD FAD . D 3 ACT A 1 602 6 ACT ACT . E 4 CJ8 A 1 603 1 CJ8 DAT . F 5 CA A 1 604 4 CA CA . G 5 CA A 1 605 7 CA CA . H 6 GOL A 1 606 3 GOL GOL . I 2 FAD B 1 601 601 FAD FAD . J 3 ACT B 1 602 3 ACT ACT . K 3 ACT B 1 603 4 ACT ACT . L 3 ACT B 1 604 5 ACT ACT . M 5 CA B 1 605 5 CA CA . N 5 CA B 1 606 6 CA CA . O 5 CA B 1 607 8 CA CA . P 7 CJE B 1 608 2 CJE EMA . Q 6 GOL B 1 609 1 GOL GOL . R 6 GOL B 1 610 2 GOL GOL . S 6 GOL B 1 611 4 GOL GOL . T 6 GOL B 1 612 5 GOL GOL . U 6 GOL B 1 613 6 GOL GOL . V 6 GOL B 1 614 7 GOL GOL . W 8 HOH A 1 701 90 HOH HOH . W 8 HOH A 2 702 94 HOH HOH . W 8 HOH A 3 703 92 HOH HOH . W 8 HOH A 4 704 56 HOH HOH . W 8 HOH A 5 705 52 HOH HOH . W 8 HOH A 6 706 67 HOH HOH . W 8 HOH A 7 707 81 HOH HOH . W 8 HOH A 8 708 106 HOH HOH . W 8 HOH A 9 709 183 HOH HOH . W 8 HOH A 10 710 177 HOH HOH . W 8 HOH A 11 711 91 HOH HOH . W 8 HOH A 12 712 61 HOH HOH . W 8 HOH A 13 713 143 HOH HOH . W 8 HOH A 14 714 102 HOH HOH . W 8 HOH A 15 715 66 HOH HOH . W 8 HOH A 16 716 87 HOH HOH . W 8 HOH A 17 717 85 HOH HOH . W 8 HOH A 18 718 65 HOH HOH . W 8 HOH A 19 719 100 HOH HOH . W 8 HOH A 20 720 75 HOH HOH . W 8 HOH A 21 721 21 HOH HOH . W 8 HOH A 22 722 14 HOH HOH . W 8 HOH A 23 723 35 HOH HOH . W 8 HOH A 24 724 84 HOH HOH . W 8 HOH A 25 725 15 HOH HOH . W 8 HOH A 26 726 126 HOH HOH . W 8 HOH A 27 727 184 HOH HOH . W 8 HOH A 28 728 207 HOH HOH . W 8 HOH A 29 729 174 HOH HOH . W 8 HOH A 30 730 185 HOH HOH . W 8 HOH A 31 731 83 HOH HOH . W 8 HOH A 32 732 46 HOH HOH . W 8 HOH A 33 733 55 HOH HOH . W 8 HOH A 34 734 180 HOH HOH . W 8 HOH A 35 735 89 HOH HOH . W 8 HOH A 36 736 170 HOH HOH . W 8 HOH A 37 737 5 HOH HOH . W 8 HOH A 38 738 64 HOH HOH . W 8 HOH A 39 739 78 HOH HOH . W 8 HOH A 40 740 23 HOH HOH . W 8 HOH A 41 741 112 HOH HOH . W 8 HOH A 42 742 137 HOH HOH . W 8 HOH A 43 743 103 HOH HOH . W 8 HOH A 44 744 120 HOH HOH . W 8 HOH A 45 745 173 HOH HOH . W 8 HOH A 46 746 119 HOH HOH . W 8 HOH A 47 747 17 HOH HOH . W 8 HOH A 48 748 93 HOH HOH . W 8 HOH A 49 749 51 HOH HOH . W 8 HOH A 50 750 20 HOH HOH . W 8 HOH A 51 751 114 HOH HOH . W 8 HOH A 52 752 186 HOH HOH . W 8 HOH A 53 753 86 HOH HOH . W 8 HOH A 54 754 165 HOH HOH . W 8 HOH A 55 755 118 HOH HOH . W 8 HOH A 56 756 191 HOH HOH . W 8 HOH A 57 757 113 HOH HOH . W 8 HOH A 58 758 200 HOH HOH . W 8 HOH A 59 759 181 HOH HOH . W 8 HOH A 60 760 10 HOH HOH . W 8 HOH A 61 761 188 HOH HOH . W 8 HOH A 62 762 144 HOH HOH . W 8 HOH A 63 763 95 HOH HOH . W 8 HOH A 64 764 43 HOH HOH . W 8 HOH A 65 765 201 HOH HOH . W 8 HOH A 66 766 29 HOH HOH . W 8 HOH A 67 767 125 HOH HOH . W 8 HOH A 68 768 53 HOH HOH . W 8 HOH A 69 769 140 HOH HOH . W 8 HOH A 70 770 199 HOH HOH . W 8 HOH A 71 771 77 HOH HOH . W 8 HOH A 72 772 12 HOH HOH . W 8 HOH A 73 773 209 HOH HOH . W 8 HOH A 74 774 124 HOH HOH . W 8 HOH A 75 775 198 HOH HOH . W 8 HOH A 76 776 44 HOH HOH . W 8 HOH A 77 777 142 HOH HOH . W 8 HOH A 78 778 99 HOH HOH . W 8 HOH A 79 779 139 HOH HOH . W 8 HOH A 80 780 45 HOH HOH . W 8 HOH A 81 781 138 HOH HOH . W 8 HOH A 82 782 187 HOH HOH . W 8 HOH A 83 783 141 HOH HOH . W 8 HOH A 84 784 206 HOH HOH . W 8 HOH A 85 785 203 HOH HOH . W 8 HOH A 86 786 104 HOH HOH . W 8 HOH A 87 787 117 HOH HOH . W 8 HOH A 88 788 16 HOH HOH . W 8 HOH A 89 789 54 HOH HOH . X 8 HOH B 1 701 74 HOH HOH . X 8 HOH B 2 702 71 HOH HOH . X 8 HOH B 3 703 190 HOH HOH . X 8 HOH B 4 704 68 HOH HOH . X 8 HOH B 5 705 153 HOH HOH . X 8 HOH B 6 706 37 HOH HOH . X 8 HOH B 7 707 96 HOH HOH . X 8 HOH B 8 708 59 HOH HOH . X 8 HOH B 9 709 196 HOH HOH . X 8 HOH B 10 710 179 HOH HOH . X 8 HOH B 11 711 36 HOH HOH . X 8 HOH B 12 712 195 HOH HOH . X 8 HOH B 13 713 72 HOH HOH . X 8 HOH B 14 714 169 HOH HOH . X 8 HOH B 15 715 109 HOH HOH . X 8 HOH B 16 716 47 HOH HOH . X 8 HOH B 17 717 25 HOH HOH . X 8 HOH B 18 718 80 HOH HOH . X 8 HOH B 19 719 146 HOH HOH . X 8 HOH B 20 720 9 HOH HOH . X 8 HOH B 21 721 202 HOH HOH . X 8 HOH B 22 722 156 HOH HOH . X 8 HOH B 23 723 162 HOH HOH . X 8 HOH B 24 724 3 HOH HOH . X 8 HOH B 25 725 1 HOH HOH . X 8 HOH B 26 726 57 HOH HOH . X 8 HOH B 27 727 69 HOH HOH . X 8 HOH B 28 728 110 HOH HOH . X 8 HOH B 29 729 166 HOH HOH . X 8 HOH B 30 730 127 HOH HOH . X 8 HOH B 31 731 60 HOH HOH . X 8 HOH B 32 732 157 HOH HOH . X 8 HOH B 33 733 107 HOH HOH . X 8 HOH B 34 734 194 HOH HOH . X 8 HOH B 35 735 4 HOH HOH . X 8 HOH B 36 736 204 HOH HOH . X 8 HOH B 37 737 128 HOH HOH . X 8 HOH B 38 738 50 HOH HOH . X 8 HOH B 39 739 7 HOH HOH . X 8 HOH B 40 740 197 HOH HOH . X 8 HOH B 41 741 19 HOH HOH . X 8 HOH B 42 742 164 HOH HOH . X 8 HOH B 43 743 38 HOH HOH . X 8 HOH B 44 744 49 HOH HOH . X 8 HOH B 45 745 26 HOH HOH . X 8 HOH B 46 746 192 HOH HOH . X 8 HOH B 47 747 27 HOH HOH . X 8 HOH B 48 748 116 HOH HOH . X 8 HOH B 49 749 147 HOH HOH . X 8 HOH B 50 750 115 HOH HOH . X 8 HOH B 51 751 48 HOH HOH . X 8 HOH B 52 752 133 HOH HOH . X 8 HOH B 53 753 151 HOH HOH . X 8 HOH B 54 754 163 HOH HOH . X 8 HOH B 55 755 30 HOH HOH . X 8 HOH B 56 756 150 HOH HOH . X 8 HOH B 57 757 34 HOH HOH . X 8 HOH B 58 758 98 HOH HOH . X 8 HOH B 59 759 105 HOH HOH . X 8 HOH B 60 760 152 HOH HOH . X 8 HOH B 61 761 168 HOH HOH . X 8 HOH B 62 762 167 HOH HOH . X 8 HOH B 63 763 145 HOH HOH . X 8 HOH B 64 764 58 HOH HOH . X 8 HOH B 65 765 193 HOH HOH . X 8 HOH B 66 766 175 HOH HOH . X 8 HOH B 67 767 132 HOH HOH . X 8 HOH B 68 768 33 HOH HOH . X 8 HOH B 69 769 122 HOH HOH . X 8 HOH B 70 770 205 HOH HOH . X 8 HOH B 71 771 178 HOH HOH . X 8 HOH B 72 772 129 HOH HOH . X 8 HOH B 73 773 149 HOH HOH . X 8 HOH B 74 774 2 HOH HOH . X 8 HOH B 75 775 31 HOH HOH . X 8 HOH B 76 776 41 HOH HOH . X 8 HOH B 77 777 160 HOH HOH . X 8 HOH B 78 778 136 HOH HOH . X 8 HOH B 79 779 123 HOH HOH . X 8 HOH B 80 780 189 HOH HOH . X 8 HOH B 81 781 210 HOH HOH . X 8 HOH B 82 782 158 HOH HOH . X 8 HOH B 83 783 130 HOH HOH . X 8 HOH B 84 784 131 HOH HOH . X 8 HOH B 85 785 134 HOH HOH . X 8 HOH B 86 786 42 HOH HOH . X 8 HOH B 87 787 159 HOH HOH . X 8 HOH B 88 788 182 HOH HOH . X 8 HOH B 89 789 148 HOH HOH . X 8 HOH B 90 790 135 HOH HOH . X 8 HOH B 91 791 171 HOH HOH . X 8 HOH B 92 792 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAH CJE . . . P 7 12.783 37.987 -31.21 1 110.17 ? CAH CJE 608 B 1 HETATM 2 C CAG CJE . . . P 7 12.702 38.874 -29.96 1 111.13 ? CAG CJE 608 B 1 HETATM 3 O OAF CJE . . . P 7 11.648 38.424 -29.085 1 111.17 ? OAF CJE 608 B 1 HETATM 4 C CAD CJE . . . P 7 11.56 39.149 -27.916 1 110.57 ? CAD CJE 608 B 1 HETATM 5 O OAE CJE . . . P 7 12.542 39.617 -27.322 1 109.81 ? OAE CJE 608 B 1 HETATM 6 C CAC CJE . . . P 7 10.115 39.257 -27.355 1 109.94 ? CAC CJE 608 B 1 HETATM 7 C CAI CJE . . . P 7 9.319 40.259 -28.168 1 109.85 ? CAI CJE 608 B 1 HETATM 8 C CAB CJE . . . P 7 10.004 39.56 -25.842 1 109.56 ? CAB CJE 608 B 1 HETATM 9 O OAJ CJE . . . P 7 9.137 40.309 -25.379 1 109.59 ? OAJ CJE 608 B 1 HETATM 10 C CAA CJE . . . P 7 10.886 38.713 -24.911 1 108.93 ? CAA CJE 608 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #