data_6F33 # _model_server_result.job_id CUJR3CCPX_spVWTeSOdioQ _model_server_result.datetime_utc '2025-02-27 22:46:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6f33 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1003}' # _entry.id 6F33 # _exptl.entry_id 6F33 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.75 _cell.angle_gamma 90 _cell.entry_id 6F33 _cell.length_a 74.492 _cell.length_b 126.935 _cell.length_c 112.245 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6F33 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H,I,J,K,L 1 1 B,F,G,M,N,O,P,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 J N N ? 4 N N N ? 4 O N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 1005 NAG 2 n C NAG 2 C 2 NAG A 1006 NAG 2 n D NAG 1 D 1 NAG A 1008 NAG 2 n D NAG 2 D 2 NAG A 1009 NAG 2 n E NAG 1 E 1 NAG A 1010 NAG 2 n E NAG 2 E 2 NAG A 1011 NAG 2 n F NAG 1 F 1 NAG B 1005 NAG 2 n F NAG 2 F 2 NAG B 1006 NAG 2 n G NAG 1 G 1 NAG B 1007 NAG 2 n G NAG 2 G 2 NAG B 1008 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 145 1_555 A SG CYS 56 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 18 A CYS 153 1_555 A SG CYS 230 A CYS 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 246 A CYS 381 1_555 A SG CYS 343 A CYS 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 294 A CYS 429 1_555 A SG CYS 683 A CYS 818 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 427 A CYS 562 1_555 A SG CYS 488 A CYS 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 A SG CYS 440 A CYS 575 1_555 A SG CYS 544 A CYS 679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 A SG CYS 442 A CYS 577 1_555 A SG CYS 529 A CYS 664 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 B SG CYS 10 B CYS 145 1_555 B SG CYS 56 B CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf9 B SG CYS 18 B CYS 153 1_555 B SG CYS 230 B CYS 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 B SG CYS 246 B CYS 381 1_555 B SG CYS 343 B CYS 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf11 B SG CYS 294 B CYS 429 1_555 B SG CYS 683 B CYS 818 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf12 B SG CYS 427 B CYS 562 1_555 B SG CYS 488 B CYS 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf13 B SG CYS 440 B CYS 575 1_555 B SG CYS 544 B CYS 679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf14 B SG CYS 442 B CYS 577 1_555 B SG CYS 529 B CYS 664 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf15 B SG CYS 652 B CYS 787 1_555 B SG CYS 662 B CYS 797 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 102 A ASN 237 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 A ND2 ASN 145 A ASN 280 1_555 L C1 NAG . A NAG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale3 A ND2 ASN 154 A ASN 289 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale4 A ND2 ASN 398 A ASN 533 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale5 B ND2 ASN 102 B ASN 237 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale6 B ND2 ASN 398 B ASN 533 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale7 B ND2 ASN 439 B ASN 574 1_555 Q C1 NAG . B NAG 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale8 B ND2 ASN 567 B ASN 702 1_555 R C1 NAG . B NAG 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale9 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale11 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale12 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale13 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? metalc ? metalc1 A OD1 ASP 33 A ASP 168 1_555 I ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? metalc ? metalc2 A OD2 ASP 33 A ASP 168 1_555 I ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc3 A OD1 ASP 191 A ASP 326 1_555 J ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc4 A OD2 ASP 191 A ASP 326 1_555 J ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc5 A NE2 HIS 195 A HIS 330 1_555 J ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc6 A OD2 ASP 238 A ASP 373 1_555 I ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc7 A NE2 HIS 239 A HIS 374 1_555 I ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc8 A NE2 HIS 348 A HIS 483 1_555 J ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc9 A OD1 ASP 617 A ASP 752 1_555 K CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc10 A OD1 ASN 619 A ASN 754 1_555 K CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc11 A OD1 ASP 621 A ASP 756 1_555 K CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc12 A O HIS 623 A HIS 758 1_555 K CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc13 A OD1 ASP 625 A ASP 760 1_555 K CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc14 H O1B ZAN . A ZAN 1001 1_555 J ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc15 H O2A ZAN . A ZAN 1001 1_555 J ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc16 B OD1 ASP 33 B ASP 168 1_555 N ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.886 ? metalc ? metalc17 B OD2 ASP 33 B ASP 168 1_555 N ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc18 B OD1 ASP 191 B ASP 326 1_555 O ZN ZN . B ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc19 B OD2 ASP 191 B ASP 326 1_555 O ZN ZN . B ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc20 B NE2 HIS 195 B HIS 330 1_555 O ZN ZN . B ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc21 B NE2 HIS 239 B HIS 374 1_555 N ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc22 B NE2 HIS 348 B HIS 483 1_555 O ZN ZN . B ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? metalc ? metalc23 B OD1 ASP 617 B ASP 752 1_555 P CA CA . B CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc24 B OD1 ASN 619 B ASN 754 1_555 P CA CA . B CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc25 B OD1 ASP 621 B ASP 756 1_555 P CA CA . B CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc26 B O HIS 623 B HIS 758 1_555 P CA CA . B CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc27 B OD1 ASP 625 B ASP 760 1_555 P CA CA . B CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc28 M O1A ZAN . B ZAN 1001 1_555 O ZN ZN . B ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6F33 _atom_sites.fract_transf_matrix[1][1] 0.013424 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001589 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007878 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008971 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 3 ZAN A 1 1001 1001 ZAN ZAN . I 4 ZN A 1 1002 1002 ZN ZN . J 4 ZN A 1 1003 1003 ZN ZN . K 5 CA A 1 1004 1004 CA CA . L 6 NAG A 1 1007 1007 NAG NAG . M 3 ZAN B 1 1001 1001 ZAN ZAN . N 4 ZN B 1 1002 1002 ZN ZN . O 4 ZN B 1 1003 1003 ZN ZN . P 5 CA B 1 1004 1004 CA CA . Q 6 NAG B 1 1009 1009 NAG NAG . R 6 NAG B 1 1010 1010 NAG NAG . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 4 _atom_site.Cartn_x -9.786 _atom_site.Cartn_y 13.015 _atom_site.Cartn_z 23.824 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 36.67 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1003 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 73 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #