data_6F37 # _model_server_result.job_id TDUnk-L8kDof30XBgYxwqw _model_server_result.datetime_utc '2025-01-10 08:01:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6f37 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":102}' # _entry.id 6F37 # _exptl.entry_id 6F37 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-mannopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6F37 _cell.length_a 88.76 _cell.length_b 88.76 _cell.length_c 88.76 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6F37 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1,2,4 B,F,G,I 2 1,3,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 6_544 z+1/2,-x-1/2,-y-1 0 0 1 -1 0 0 0 -1 0 44.38 -44.38 -88.76 4 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 5 'crystal symmetry operation' 12_444 -y-1/2,-z-1,x-1/2 0 -1 0 0 0 -1 1 0 0 -44.38 -88.76 -44.38 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id BMA _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-mannopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BMA sing 70 n n C1 O1 BMA sing 71 n n C1 O5 BMA sing 72 n n C1 H1 BMA sing 73 n n C2 C3 BMA sing 74 n n C2 O2 BMA sing 75 n n C2 H2 BMA sing 76 n n C3 C4 BMA sing 77 n n C3 O3 BMA sing 78 n n C3 H3 BMA sing 79 n n C4 C5 BMA sing 80 n n C4 O4 BMA sing 81 n n C4 H4 BMA sing 82 n n C5 C6 BMA sing 83 n n C5 O5 BMA sing 84 n n C5 H5 BMA sing 85 n n C6 O6 BMA sing 86 n n C6 H61 BMA sing 87 n n C6 H62 BMA sing 88 n n O1 HO1 BMA sing 89 n n O2 HO2 BMA sing 90 n n O3 HO3 BMA sing 91 n n O4 HO4 BMA sing 92 n n O6 HO6 BMA sing 93 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BMA DManpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BMA b-D-mannopyranose 'COMMON NAME' GMML 1 BMA b-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BMA Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6F37 _atom_sites.fract_transf_matrix[1][1] 0.011266 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011266 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BMA A 1 101 202 BMA BMA . D 2 BMA A 1 102 207 BMA BMA . E 3 NHE A 1 103 1 NHE NHE . F 2 BMA B 1 101 204 BMA BMA . G 2 BMA B 1 102 208 BMA BMA . H 4 HOH A 1 201 18 HOH HOH . H 4 HOH A 2 202 28 HOH HOH . H 4 HOH A 3 203 26 HOH HOH . H 4 HOH A 4 204 39 HOH HOH . H 4 HOH A 5 205 1 HOH HOH . H 4 HOH A 6 206 52 HOH HOH . H 4 HOH A 7 207 69 HOH HOH . H 4 HOH A 8 208 53 HOH HOH . H 4 HOH A 9 209 10 HOH HOH . H 4 HOH A 10 210 15 HOH HOH . H 4 HOH A 11 211 54 HOH HOH . H 4 HOH A 12 212 60 HOH HOH . H 4 HOH A 13 213 49 HOH HOH . H 4 HOH A 14 214 62 HOH HOH . H 4 HOH A 15 215 38 HOH HOH . H 4 HOH A 16 216 66 HOH HOH . H 4 HOH A 17 217 64 HOH HOH . H 4 HOH A 18 218 27 HOH HOH . H 4 HOH A 19 219 11 HOH HOH . H 4 HOH A 20 220 20 HOH HOH . H 4 HOH A 21 221 16 HOH HOH . H 4 HOH A 22 222 21 HOH HOH . H 4 HOH A 23 223 41 HOH HOH . H 4 HOH A 24 224 13 HOH HOH . H 4 HOH A 25 225 14 HOH HOH . H 4 HOH A 26 226 40 HOH HOH . H 4 HOH A 27 227 24 HOH HOH . H 4 HOH A 28 228 47 HOH HOH . H 4 HOH A 29 229 6 HOH HOH . H 4 HOH A 30 230 8 HOH HOH . H 4 HOH A 31 231 33 HOH HOH . H 4 HOH A 32 232 2 HOH HOH . H 4 HOH A 33 233 35 HOH HOH . H 4 HOH A 34 234 7 HOH HOH . H 4 HOH A 35 235 67 HOH HOH . H 4 HOH A 36 236 46 HOH HOH . H 4 HOH A 37 237 22 HOH HOH . H 4 HOH A 38 238 48 HOH HOH . H 4 HOH A 39 239 74 HOH HOH . H 4 HOH A 40 240 29 HOH HOH . H 4 HOH A 41 241 56 HOH HOH . H 4 HOH A 42 242 76 HOH HOH . H 4 HOH A 43 243 9 HOH HOH . H 4 HOH A 44 244 36 HOH HOH . H 4 HOH A 45 245 23 HOH HOH . H 4 HOH A 46 246 75 HOH HOH . H 4 HOH A 47 247 73 HOH HOH . I 4 HOH B 1 201 37 HOH HOH . I 4 HOH B 2 202 72 HOH HOH . I 4 HOH B 3 203 5 HOH HOH . I 4 HOH B 4 204 3 HOH HOH . I 4 HOH B 5 205 12 HOH HOH . I 4 HOH B 6 206 45 HOH HOH . I 4 HOH B 7 207 57 HOH HOH . I 4 HOH B 8 208 50 HOH HOH . I 4 HOH B 9 209 70 HOH HOH . I 4 HOH B 10 210 43 HOH HOH . I 4 HOH B 11 211 34 HOH HOH . I 4 HOH B 12 212 30 HOH HOH . I 4 HOH B 13 213 55 HOH HOH . I 4 HOH B 14 214 19 HOH HOH . I 4 HOH B 15 215 42 HOH HOH . I 4 HOH B 16 216 59 HOH HOH . I 4 HOH B 17 217 17 HOH HOH . I 4 HOH B 18 218 61 HOH HOH . I 4 HOH B 19 219 25 HOH HOH . I 4 HOH B 20 220 4 HOH HOH . I 4 HOH B 21 221 65 HOH HOH . I 4 HOH B 22 222 68 HOH HOH . I 4 HOH B 23 223 51 HOH HOH . I 4 HOH B 24 224 31 HOH HOH . I 4 HOH B 25 225 63 HOH HOH . I 4 HOH B 26 226 32 HOH HOH . I 4 HOH B 27 227 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BMA . . . G 2 0.3 -23.605 -45.904 1 78.27 ? C1 BMA 102 B 1 HETATM 2 C C2 BMA . . . G 2 -0.148 -23.068 -47.262 1 78.5 ? C2 BMA 102 B 1 HETATM 3 C C3 BMA . . . G 2 -0.041 -21.543 -47.307 1 78.2 ? C3 BMA 102 B 1 HETATM 4 C C4 BMA . . . G 2 -0.753 -20.921 -46.114 1 78.35 ? C4 BMA 102 B 1 HETATM 5 C C5 BMA . . . G 2 -0.205 -21.53 -44.827 1 78.94 ? C5 BMA 102 B 1 HETATM 6 C C6 BMA . . . G 2 -0.871 -20.954 -43.581 1 80.1 ? C6 BMA 102 B 1 HETATM 7 O O1 BMA . . . G 2 0.041 -25.012 -45.835 1 79.93 ? O1 BMA 102 B 1 HETATM 8 O O2 BMA . . . G 2 -1.497 -23.481 -47.498 1 77.94 ? O2 BMA 102 B 1 HETATM 9 O O3 BMA . . . G 2 -0.59 -21.022 -48.521 1 78.58 ? O3 BMA 102 B 1 HETATM 10 O O4 BMA . . . G 2 -0.556 -19.505 -46.135 1 79.06 ? O4 BMA 102 B 1 HETATM 11 O O5 BMA . . . G 2 -0.415 -22.945 -44.858 1 77.33 ? O5 BMA 102 B 1 HETATM 12 O O6 BMA . . . G 2 -0.157 -21.398 -42.423 1 79.42 ? O6 BMA 102 B 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #