data_6F3G # _model_server_result.job_id 4Ko4-mElCEZRt5mBVMyQbw _model_server_result.datetime_utc '2024-11-23 11:01:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6f3g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":502}' # _entry.id 6F3G # _exptl.entry_id 6F3G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.43 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}4,~{N}4-dimethyl-~{N}1-(5-propan-2-ylpyrrolo[3,2-d]pyrimidin-4-yl)cyclohexane-1,4-diamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6F3G _cell.length_a 87.512 _cell.length_b 110.277 _cell.length_c 142.133 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6F3G _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TPO 179 A TPO 342 1_555 A N VAL 180 A VAL 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C MET 181 A MET 344 1_555 A N TPO 182 A TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale3 A C TPO 182 A TPO 345 1_555 A N SEP 183 A SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale4 A C SEP 183 A SEP 346 1_555 A N ARG 184 A ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale5 B C MET 181 B MET 344 1_555 B N TPO 182 B TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale6 B C TPO 182 B TPO 345 1_555 B N SEP 183 B SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale7 B C SEP 183 B SEP 346 1_555 B N ARG 184 B ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? # _chem_comp.formula 'C17 H27 N5' _chem_comp.formula_weight 301.43 _chem_comp.id CJN _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}4,~{N}4-dimethyl-~{N}1-(5-propan-2-ylpyrrolo[3,2-d]pyrimidin-4-yl)cyclohexane-1,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 N21 CJN sing 70 n n N21 C17 CJN sing 71 n n N21 C22 CJN sing 72 n n C17 C16 CJN sing 73 n n C17 C19 CJN sing 74 n n C16 C15 CJN sing 75 n n C15 C13 CJN sing 76 n n C1 C2 CJN sing 77 n n C3 C2 CJN sing 78 n n C19 C20 CJN sing 79 n n C2 N4 CJN sing 80 n n C20 C13 CJN sing 81 n n C13 N12 CJN sing 82 n n N12 C11 CJN sing 83 n n N4 C24 CJN sing 84 n y N4 C5 CJN sing 85 n y C11 C24 CJN doub 86 n y C11 N10 CJN sing 87 n y C24 C7 CJN sing 88 n y C5 C6 CJN doub 89 n y N10 C9 CJN doub 90 n y C7 C6 CJN sing 91 n y C7 N8 CJN doub 92 n y C9 N8 CJN sing 93 n y C1 H1 CJN sing 94 n n C1 H2 CJN sing 95 n n C1 H3 CJN sing 96 n n C2 H4 CJN sing 97 n n C3 H5 CJN sing 98 n n C3 H6 CJN sing 99 n n C3 H7 CJN sing 100 n n C9 H8 CJN sing 101 n n C13 H14 CJN sing 102 n n C15 H9 CJN sing 103 n n C15 H10 CJN sing 104 n n C16 H11 CJN sing 105 n n C16 H12 CJN sing 106 n n C19 H13 CJN sing 107 n n C19 H15 CJN sing 108 n n C20 H16 CJN sing 109 n n C20 H17 CJN sing 110 n n C22 H19 CJN sing 111 n n C22 H20 CJN sing 112 n n C22 H21 CJN sing 113 n n C5 H22 CJN sing 114 n n C6 H23 CJN sing 115 n n N12 H24 CJN sing 116 n n C17 H18 CJN sing 117 n n C23 H26 CJN sing 118 n n C23 H27 CJN sing 119 n n C23 H28 CJN sing 120 n n # _atom_sites.entry_id 6F3G _atom_sites.fract_transf_matrix[1][1] 0.011427 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009068 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007036 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CJN A 1 501 3 CJN INH . D 4 SO4 B 1 501 1 SO4 SO4 . E 3 CJN B 1 502 4 CJN INH . F 5 HOH A 1 601 4 HOH HOH . F 5 HOH A 2 602 46 HOH HOH . F 5 HOH A 3 603 11 HOH HOH . F 5 HOH A 4 604 39 HOH HOH . F 5 HOH A 5 605 69 HOH HOH . F 5 HOH A 6 606 14 HOH HOH . F 5 HOH A 7 607 43 HOH HOH . F 5 HOH A 8 608 62 HOH HOH . F 5 HOH A 9 609 36 HOH HOH . F 5 HOH A 10 610 44 HOH HOH . F 5 HOH A 11 611 48 HOH HOH . F 5 HOH A 12 612 15 HOH HOH . F 5 HOH A 13 613 51 HOH HOH . F 5 HOH A 14 614 61 HOH HOH . F 5 HOH A 15 615 26 HOH HOH . F 5 HOH A 16 616 45 HOH HOH . F 5 HOH A 17 617 40 HOH HOH . F 5 HOH A 18 618 42 HOH HOH . F 5 HOH A 19 619 37 HOH HOH . F 5 HOH A 20 620 6 HOH HOH . F 5 HOH A 21 621 23 HOH HOH . F 5 HOH A 22 622 64 HOH HOH . F 5 HOH A 23 623 52 HOH HOH . F 5 HOH A 24 624 58 HOH HOH . F 5 HOH A 25 625 59 HOH HOH . F 5 HOH A 26 626 67 HOH HOH . F 5 HOH A 27 627 20 HOH HOH . F 5 HOH A 28 628 73 HOH HOH . F 5 HOH A 29 629 34 HOH HOH . F 5 HOH A 30 630 41 HOH HOH . F 5 HOH A 31 631 50 HOH HOH . F 5 HOH A 32 632 18 HOH HOH . F 5 HOH A 33 633 30 HOH HOH . F 5 HOH A 34 634 63 HOH HOH . F 5 HOH A 35 635 72 HOH HOH . F 5 HOH A 36 636 49 HOH HOH . F 5 HOH A 37 637 32 HOH HOH . G 5 HOH B 1 601 5 HOH HOH . G 5 HOH B 2 602 35 HOH HOH . G 5 HOH B 3 603 17 HOH HOH . G 5 HOH B 4 604 16 HOH HOH . G 5 HOH B 5 605 10 HOH HOH . G 5 HOH B 6 606 33 HOH HOH . G 5 HOH B 7 607 31 HOH HOH . G 5 HOH B 8 608 38 HOH HOH . G 5 HOH B 9 609 24 HOH HOH . G 5 HOH B 10 610 1 HOH HOH . G 5 HOH B 11 611 28 HOH HOH . G 5 HOH B 12 612 68 HOH HOH . G 5 HOH B 13 613 22 HOH HOH . G 5 HOH B 14 614 2 HOH HOH . G 5 HOH B 15 615 21 HOH HOH . G 5 HOH B 16 616 25 HOH HOH . G 5 HOH B 17 617 29 HOH HOH . G 5 HOH B 18 618 60 HOH HOH . G 5 HOH B 19 619 13 HOH HOH . G 5 HOH B 20 620 9 HOH HOH . G 5 HOH B 21 621 54 HOH HOH . G 5 HOH B 22 622 47 HOH HOH . G 5 HOH B 23 623 3 HOH HOH . G 5 HOH B 24 624 7 HOH HOH . G 5 HOH B 25 625 19 HOH HOH . G 5 HOH B 26 626 8 HOH HOH . G 5 HOH B 27 627 71 HOH HOH . G 5 HOH B 28 628 66 HOH HOH . G 5 HOH B 29 629 57 HOH HOH . G 5 HOH B 30 630 56 HOH HOH . G 5 HOH B 31 631 27 HOH HOH . G 5 HOH B 32 632 65 HOH HOH . G 5 HOH B 33 633 55 HOH HOH . G 5 HOH B 34 634 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CJN . . . E 3 14.098 -37.674 -11.314 1 43.37 ? C1 CJN 502 B 1 HETATM 2 C C2 CJN . . . E 3 12.756 -38.297 -10.922 1 43.94 ? C2 CJN 502 B 1 HETATM 3 C C3 CJN . . . E 3 12.819 -39.784 -11.313 1 45.89 ? C3 CJN 502 B 1 HETATM 4 C C7 CJN . . . E 3 11.349 -37.927 -7.498 1 29.3 ? C7 CJN 502 B 1 HETATM 5 C C9 CJN . . . E 3 9.082 -37.912 -7.094 1 33.1 ? C9 CJN 502 B 1 HETATM 6 C C11 CJN . . . E 3 9.802 -38.103 -9.337 1 32.77 ? C11 CJN 502 B 1 HETATM 7 C C13 CJN . . . E 3 8.002 -38.164 -11.062 1 37.7 ? C13 CJN 502 B 1 HETATM 8 C C15 CJN . . . E 3 7.732 -39.118 -12.243 1 35.44 ? C15 CJN 502 B 1 HETATM 9 C C16 CJN . . . E 3 6.212 -39.139 -12.503 1 34.81 ? C16 CJN 502 B 1 HETATM 10 C C19 CJN . . . E 3 5.995 -36.74 -11.686 1 35.58 ? C19 CJN 502 B 1 HETATM 11 C C20 CJN . . . E 3 7.505 -36.734 -11.37 1 37.07 ? C20 CJN 502 B 1 HETATM 12 C C22 CJN . . . E 3 3.244 -38.271 -12.488 1 43.55 ? C22 CJN 502 B 1 HETATM 13 C C24 CJN . . . E 3 11.147 -38.066 -8.908 1 33.87 ? C24 CJN 502 B 1 HETATM 14 N N4 CJN . . . E 3 12.412 -38.112 -9.497 1 37.34 ? N4 CJN 502 B 1 HETATM 15 C C5 CJN . . . E 3 13.343 -38.024 -8.497 1 33.97 ? C5 CJN 502 B 1 HETATM 16 C C6 CJN . . . E 3 12.777 -37.909 -7.287 1 28.66 ? C6 CJN 502 B 1 HETATM 17 N N8 CJN . . . E 3 10.313 -37.862 -6.647 1 30.46 ? N8 CJN 502 B 1 HETATM 18 N N10 CJN . . . E 3 8.844 -38.016 -8.406 1 32.91 ? N10 CJN 502 B 1 HETATM 19 N N12 CJN . . . E 3 9.437 -38.187 -10.676 1 35.83 ? N12 CJN 502 B 1 HETATM 20 C C17 CJN . . . E 3 5.734 -37.715 -12.865 1 38.01 ? C17 CJN 502 B 1 HETATM 21 N N21 CJN . . . E 3 4.311 -37.672 -13.322 1 44.44 ? N21 CJN 502 B 1 HETATM 22 C C23 CJN . . . E 3 4.091 -37.878 -14.773 1 44.54 ? C23 CJN 502 B 1 HETATM 23 H H14 CJN . . . E 3 7.409 -38.533 -10.223 1 38.17 ? H14 CJN 502 B 1 HETATM 24 H H18 CJN . . . E 3 6.353 -37.368 -13.696 1 37.31 ? H18 CJN 502 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #