data_6F3L # _model_server_result.job_id NdkBFR0wOnA3spABstXn2Q _model_server_result.datetime_utc '2024-10-13 09:16:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6f3l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 6F3L # _exptl.entry_id 6F3L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6F3L _cell.length_a 128.646 _cell.length_b 128.646 _cell.length_c 116.276 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6F3L _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 116.276 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 681 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 680 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 901 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.406 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # _atom_sites.entry_id 6F3L _atom_sites.fract_transf_matrix[1][1] 0.007773 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007773 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0086 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 901 903 PLP PLP . C 3 CJW A 1 902 1 CJW 10b . D 4 HOH A 1 1001 46 HOH HOH . D 4 HOH A 2 1002 205 HOH HOH . D 4 HOH A 3 1003 179 HOH HOH . D 4 HOH A 4 1004 336 HOH HOH . D 4 HOH A 5 1005 13 HOH HOH . D 4 HOH A 6 1006 230 HOH HOH . D 4 HOH A 7 1007 82 HOH HOH . D 4 HOH A 8 1008 137 HOH HOH . D 4 HOH A 9 1009 67 HOH HOH . D 4 HOH A 10 1010 235 HOH HOH . D 4 HOH A 11 1011 376 HOH HOH . D 4 HOH A 12 1012 59 HOH HOH . D 4 HOH A 13 1013 85 HOH HOH . D 4 HOH A 14 1014 218 HOH HOH . D 4 HOH A 15 1015 142 HOH HOH . D 4 HOH A 16 1016 244 HOH HOH . D 4 HOH A 17 1017 4 HOH HOH . D 4 HOH A 18 1018 158 HOH HOH . D 4 HOH A 19 1019 343 HOH HOH . D 4 HOH A 20 1020 209 HOH HOH . D 4 HOH A 21 1021 389 HOH HOH . D 4 HOH A 22 1022 65 HOH HOH . D 4 HOH A 23 1023 94 HOH HOH . D 4 HOH A 24 1024 22 HOH HOH . D 4 HOH A 25 1025 371 HOH HOH . D 4 HOH A 26 1026 132 HOH HOH . D 4 HOH A 27 1027 107 HOH HOH . D 4 HOH A 28 1028 155 HOH HOH . D 4 HOH A 29 1029 96 HOH HOH . D 4 HOH A 30 1030 53 HOH HOH . D 4 HOH A 31 1031 161 HOH HOH . D 4 HOH A 32 1032 19 HOH HOH . D 4 HOH A 33 1033 168 HOH HOH . D 4 HOH A 34 1034 122 HOH HOH . D 4 HOH A 35 1035 339 HOH HOH . D 4 HOH A 36 1036 87 HOH HOH . D 4 HOH A 37 1037 119 HOH HOH . D 4 HOH A 38 1038 387 HOH HOH . D 4 HOH A 39 1039 129 HOH HOH . D 4 HOH A 40 1040 23 HOH HOH . D 4 HOH A 41 1041 130 HOH HOH . D 4 HOH A 42 1042 133 HOH HOH . D 4 HOH A 43 1043 197 HOH HOH . D 4 HOH A 44 1044 340 HOH HOH . D 4 HOH A 45 1045 98 HOH HOH . D 4 HOH A 46 1046 75 HOH HOH . D 4 HOH A 47 1047 256 HOH HOH . D 4 HOH A 48 1048 191 HOH HOH . D 4 HOH A 49 1049 296 HOH HOH . D 4 HOH A 50 1050 182 HOH HOH . D 4 HOH A 51 1051 79 HOH HOH . D 4 HOH A 52 1052 159 HOH HOH . D 4 HOH A 53 1053 136 HOH HOH . D 4 HOH A 54 1054 140 HOH HOH . D 4 HOH A 55 1055 31 HOH HOH . D 4 HOH A 56 1056 175 HOH HOH . D 4 HOH A 57 1057 368 HOH HOH . D 4 HOH A 58 1058 240 HOH HOH . D 4 HOH A 59 1059 21 HOH HOH . D 4 HOH A 60 1060 183 HOH HOH . D 4 HOH A 61 1061 196 HOH HOH . D 4 HOH A 62 1062 16 HOH HOH . D 4 HOH A 63 1063 164 HOH HOH . D 4 HOH A 64 1064 6 HOH HOH . D 4 HOH A 65 1065 120 HOH HOH . D 4 HOH A 66 1066 388 HOH HOH . D 4 HOH A 67 1067 34 HOH HOH . D 4 HOH A 68 1068 148 HOH HOH . D 4 HOH A 69 1069 50 HOH HOH . D 4 HOH A 70 1070 357 HOH HOH . D 4 HOH A 71 1071 208 HOH HOH . D 4 HOH A 72 1072 203 HOH HOH . D 4 HOH A 73 1073 381 HOH HOH . D 4 HOH A 74 1074 206 HOH HOH . D 4 HOH A 75 1075 145 HOH HOH . D 4 HOH A 76 1076 64 HOH HOH . D 4 HOH A 77 1077 372 HOH HOH . D 4 HOH A 78 1078 7 HOH HOH . D 4 HOH A 79 1079 225 HOH HOH . D 4 HOH A 80 1080 86 HOH HOH . D 4 HOH A 81 1081 243 HOH HOH . D 4 HOH A 82 1082 45 HOH HOH . D 4 HOH A 83 1083 379 HOH HOH . D 4 HOH A 84 1084 118 HOH HOH . D 4 HOH A 85 1085 90 HOH HOH . D 4 HOH A 86 1086 135 HOH HOH . D 4 HOH A 87 1087 134 HOH HOH . D 4 HOH A 88 1088 373 HOH HOH . D 4 HOH A 89 1089 166 HOH HOH . D 4 HOH A 90 1090 78 HOH HOH . D 4 HOH A 91 1091 383 HOH HOH . D 4 HOH A 92 1092 28 HOH HOH . D 4 HOH A 93 1093 11 HOH HOH . D 4 HOH A 94 1094 264 HOH HOH . D 4 HOH A 95 1095 281 HOH HOH . D 4 HOH A 96 1096 234 HOH HOH . D 4 HOH A 97 1097 89 HOH HOH . D 4 HOH A 98 1098 366 HOH HOH . D 4 HOH A 99 1099 153 HOH HOH . D 4 HOH A 100 1100 37 HOH HOH . D 4 HOH A 101 1101 328 HOH HOH . D 4 HOH A 102 1102 10 HOH HOH . D 4 HOH A 103 1103 262 HOH HOH . D 4 HOH A 104 1104 1 HOH HOH . D 4 HOH A 105 1105 198 HOH HOH . D 4 HOH A 106 1106 335 HOH HOH . D 4 HOH A 107 1107 18 HOH HOH . D 4 HOH A 108 1108 212 HOH HOH . D 4 HOH A 109 1109 74 HOH HOH . D 4 HOH A 110 1110 56 HOH HOH . D 4 HOH A 111 1111 54 HOH HOH . D 4 HOH A 112 1112 184 HOH HOH . D 4 HOH A 113 1113 375 HOH HOH . D 4 HOH A 114 1114 382 HOH HOH . D 4 HOH A 115 1115 162 HOH HOH . D 4 HOH A 116 1116 325 HOH HOH . D 4 HOH A 117 1117 163 HOH HOH . D 4 HOH A 118 1118 33 HOH HOH . D 4 HOH A 119 1119 139 HOH HOH . D 4 HOH A 120 1120 187 HOH HOH . D 4 HOH A 121 1121 364 HOH HOH . D 4 HOH A 122 1122 97 HOH HOH . D 4 HOH A 123 1123 92 HOH HOH . D 4 HOH A 124 1124 48 HOH HOH . D 4 HOH A 125 1125 108 HOH HOH . D 4 HOH A 126 1126 241 HOH HOH . D 4 HOH A 127 1127 147 HOH HOH . D 4 HOH A 128 1128 29 HOH HOH . D 4 HOH A 129 1129 95 HOH HOH . D 4 HOH A 130 1130 143 HOH HOH . D 4 HOH A 131 1131 17 HOH HOH . D 4 HOH A 132 1132 248 HOH HOH . D 4 HOH A 133 1133 226 HOH HOH . D 4 HOH A 134 1134 110 HOH HOH . D 4 HOH A 135 1135 355 HOH HOH . D 4 HOH A 136 1136 160 HOH HOH . D 4 HOH A 137 1137 385 HOH HOH . D 4 HOH A 138 1138 311 HOH HOH . D 4 HOH A 139 1139 321 HOH HOH . D 4 HOH A 140 1140 91 HOH HOH . D 4 HOH A 141 1141 332 HOH HOH . D 4 HOH A 142 1142 260 HOH HOH . D 4 HOH A 143 1143 128 HOH HOH . D 4 HOH A 144 1144 250 HOH HOH . D 4 HOH A 145 1145 200 HOH HOH . D 4 HOH A 146 1146 144 HOH HOH . D 4 HOH A 147 1147 71 HOH HOH . D 4 HOH A 148 1148 329 HOH HOH . D 4 HOH A 149 1149 341 HOH HOH . D 4 HOH A 150 1150 36 HOH HOH . D 4 HOH A 151 1151 154 HOH HOH . D 4 HOH A 152 1152 93 HOH HOH . D 4 HOH A 153 1153 30 HOH HOH . D 4 HOH A 154 1154 117 HOH HOH . D 4 HOH A 155 1155 254 HOH HOH . D 4 HOH A 156 1156 214 HOH HOH . D 4 HOH A 157 1157 109 HOH HOH . D 4 HOH A 158 1158 14 HOH HOH . D 4 HOH A 159 1159 349 HOH HOH . D 4 HOH A 160 1160 252 HOH HOH . D 4 HOH A 161 1161 84 HOH HOH . D 4 HOH A 162 1162 38 HOH HOH . D 4 HOH A 163 1163 211 HOH HOH . D 4 HOH A 164 1164 176 HOH HOH . D 4 HOH A 165 1165 138 HOH HOH . D 4 HOH A 166 1166 68 HOH HOH . D 4 HOH A 167 1167 146 HOH HOH . D 4 HOH A 168 1168 189 HOH HOH . D 4 HOH A 169 1169 41 HOH HOH . D 4 HOH A 170 1170 57 HOH HOH . D 4 HOH A 171 1171 178 HOH HOH . D 4 HOH A 172 1172 152 HOH HOH . D 4 HOH A 173 1173 77 HOH HOH . D 4 HOH A 174 1174 116 HOH HOH . D 4 HOH A 175 1175 73 HOH HOH . D 4 HOH A 176 1176 106 HOH HOH . D 4 HOH A 177 1177 377 HOH HOH . D 4 HOH A 178 1178 331 HOH HOH . D 4 HOH A 179 1179 165 HOH HOH . D 4 HOH A 180 1180 123 HOH HOH . D 4 HOH A 181 1181 32 HOH HOH . D 4 HOH A 182 1182 114 HOH HOH . D 4 HOH A 183 1183 210 HOH HOH . D 4 HOH A 184 1184 232 HOH HOH . D 4 HOH A 185 1185 9 HOH HOH . D 4 HOH A 186 1186 111 HOH HOH . D 4 HOH A 187 1187 40 HOH HOH . D 4 HOH A 188 1188 367 HOH HOH . D 4 HOH A 189 1189 112 HOH HOH . D 4 HOH A 190 1190 126 HOH HOH . D 4 HOH A 191 1191 3 HOH HOH . D 4 HOH A 192 1192 378 HOH HOH . D 4 HOH A 193 1193 151 HOH HOH . D 4 HOH A 194 1194 347 HOH HOH . D 4 HOH A 195 1195 384 HOH HOH . D 4 HOH A 196 1196 272 HOH HOH . D 4 HOH A 197 1197 141 HOH HOH . D 4 HOH A 198 1198 352 HOH HOH . D 4 HOH A 199 1199 127 HOH HOH . D 4 HOH A 200 1200 15 HOH HOH . D 4 HOH A 201 1201 365 HOH HOH . D 4 HOH A 202 1202 20 HOH HOH . D 4 HOH A 203 1203 51 HOH HOH . D 4 HOH A 204 1204 280 HOH HOH . D 4 HOH A 205 1205 55 HOH HOH . D 4 HOH A 206 1206 167 HOH HOH . D 4 HOH A 207 1207 25 HOH HOH . D 4 HOH A 208 1208 356 HOH HOH . D 4 HOH A 209 1209 8 HOH HOH . D 4 HOH A 210 1210 338 HOH HOH . D 4 HOH A 211 1211 52 HOH HOH . D 4 HOH A 212 1212 121 HOH HOH . D 4 HOH A 213 1213 171 HOH HOH . D 4 HOH A 214 1214 258 HOH HOH . D 4 HOH A 215 1215 58 HOH HOH . D 4 HOH A 216 1216 282 HOH HOH . D 4 HOH A 217 1217 113 HOH HOH . D 4 HOH A 218 1218 169 HOH HOH . D 4 HOH A 219 1219 267 HOH HOH . D 4 HOH A 220 1220 43 HOH HOH . D 4 HOH A 221 1221 324 HOH HOH . D 4 HOH A 222 1222 369 HOH HOH . D 4 HOH A 223 1223 66 HOH HOH . D 4 HOH A 224 1224 44 HOH HOH . D 4 HOH A 225 1225 72 HOH HOH . D 4 HOH A 226 1226 70 HOH HOH . D 4 HOH A 227 1227 12 HOH HOH . D 4 HOH A 228 1228 353 HOH HOH . D 4 HOH A 229 1229 199 HOH HOH . D 4 HOH A 230 1230 323 HOH HOH . D 4 HOH A 231 1231 2 HOH HOH . D 4 HOH A 232 1232 242 HOH HOH . D 4 HOH A 233 1233 220 HOH HOH . D 4 HOH A 234 1234 24 HOH HOH . D 4 HOH A 235 1235 150 HOH HOH . D 4 HOH A 236 1236 221 HOH HOH . D 4 HOH A 237 1237 5 HOH HOH . D 4 HOH A 238 1238 370 HOH HOH . D 4 HOH A 239 1239 334 HOH HOH . D 4 HOH A 240 1240 246 HOH HOH . D 4 HOH A 241 1241 39 HOH HOH . D 4 HOH A 242 1242 186 HOH HOH . D 4 HOH A 243 1243 88 HOH HOH . D 4 HOH A 244 1244 268 HOH HOH . D 4 HOH A 245 1245 361 HOH HOH . D 4 HOH A 246 1246 358 HOH HOH . D 4 HOH A 247 1247 380 HOH HOH . D 4 HOH A 248 1248 386 HOH HOH . D 4 HOH A 249 1249 374 HOH HOH . D 4 HOH A 250 1250 327 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . B 2 24.624 25.773 30.364 1 21.2 ? N1 PLP 901 A 1 HETATM 2 C C2 PLP . . . B 2 23.514 25.076 30.637 1 20.83 ? C2 PLP 901 A 1 HETATM 3 C C2A PLP . . . B 2 22.599 25.497 31.754 1 21.56 ? C2A PLP 901 A 1 HETATM 4 C C3 PLP . . . B 2 23.237 23.853 29.898 1 20.57 ? C3 PLP 901 A 1 HETATM 5 O O3 PLP . . . B 2 22.15 23.071 30.142 1 20.85 ? O3 PLP 901 A 1 HETATM 6 C C4 PLP . . . B 2 24.171 23.473 28.804 1 20.57 ? C4 PLP 901 A 1 HETATM 7 C C4A PLP . . . B 2 23.971 22.25 27.968 1 21.65 ? C4A PLP 901 A 1 HETATM 8 C C5 PLP . . . B 2 25.356 24.315 28.596 1 20.91 ? C5 PLP 901 A 1 HETATM 9 C C6 PLP . . . B 2 25.498 25.451 29.386 1 20.93 ? C6 PLP 901 A 1 HETATM 10 C C5A PLP . . . B 2 26.342 24.034 27.488 1 22.48 ? C5A PLP 901 A 1 HETATM 11 O O4P PLP . . . B 2 25.837 24.652 26.284 1 21.07 ? O4P PLP 901 A 1 HETATM 12 P P PLP . . . B 2 26.875 24.917 25.06 1 22.06 ? P PLP 901 A 1 HETATM 13 O O1P PLP . . . B 2 25.977 25.595 24.046 1 22.66 ? O1P PLP 901 A 1 HETATM 14 O O2P PLP . . . B 2 27.931 25.834 25.611 1 20.44 ? O2P PLP 901 A 1 HETATM 15 O O3P PLP . . . B 2 27.394 23.563 24.658 1 21.85 ? O3P PLP 901 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 15 #