data_6F3R # _model_server_result.job_id c3MRmqbcBT92jSLrwQ9c7g _model_server_result.datetime_utc '2025-02-18 15:31:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6f3r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 6F3R # _exptl.entry_id 6F3R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6F3R _cell.length_a 128.874 _cell.length_b 128.874 _cell.length_c 116.431 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6F3R _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 116.431 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 681 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 680 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 901 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.367 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # _atom_sites.entry_id 6F3R _atom_sites.fract_transf_matrix[1][1] 0.00776 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00776 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008589 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 901 903 PLP PLP . C 3 CKZ A 1 902 1 CKZ 10c . D 4 HOH A 1 1001 340 HOH HOH . D 4 HOH A 2 1002 377 HOH HOH . D 4 HOH A 3 1003 230 HOH HOH . D 4 HOH A 4 1004 137 HOH HOH . D 4 HOH A 5 1005 173 HOH HOH . D 4 HOH A 6 1006 107 HOH HOH . D 4 HOH A 7 1007 205 HOH HOH . D 4 HOH A 8 1008 46 HOH HOH . D 4 HOH A 9 1009 13 HOH HOH . D 4 HOH A 10 1010 244 HOH HOH . D 4 HOH A 11 1011 229 HOH HOH . D 4 HOH A 12 1012 209 HOH HOH . D 4 HOH A 13 1013 179 HOH HOH . D 4 HOH A 14 1014 358 HOH HOH . D 4 HOH A 15 1015 366 HOH HOH . D 4 HOH A 16 1016 87 HOH HOH . D 4 HOH A 17 1017 276 HOH HOH . D 4 HOH A 18 1018 235 HOH HOH . D 4 HOH A 19 1019 65 HOH HOH . D 4 HOH A 20 1020 363 HOH HOH . D 4 HOH A 21 1021 158 HOH HOH . D 4 HOH A 22 1022 82 HOH HOH . D 4 HOH A 23 1023 371 HOH HOH . D 4 HOH A 24 1024 21 HOH HOH . D 4 HOH A 25 1025 380 HOH HOH . D 4 HOH A 26 1026 4 HOH HOH . D 4 HOH A 27 1027 161 HOH HOH . D 4 HOH A 28 1028 94 HOH HOH . D 4 HOH A 29 1029 155 HOH HOH . D 4 HOH A 30 1030 31 HOH HOH . D 4 HOH A 31 1031 353 HOH HOH . D 4 HOH A 32 1032 98 HOH HOH . D 4 HOH A 33 1033 348 HOH HOH . D 4 HOH A 34 1034 133 HOH HOH . D 4 HOH A 35 1035 218 HOH HOH . D 4 HOH A 36 1036 347 HOH HOH . D 4 HOH A 37 1037 168 HOH HOH . D 4 HOH A 38 1038 132 HOH HOH . D 4 HOH A 39 1039 85 HOH HOH . D 4 HOH A 40 1040 372 HOH HOH . D 4 HOH A 41 1041 203 HOH HOH . D 4 HOH A 42 1042 67 HOH HOH . D 4 HOH A 43 1043 140 HOH HOH . D 4 HOH A 44 1044 22 HOH HOH . D 4 HOH A 45 1045 204 HOH HOH . D 4 HOH A 46 1046 49 HOH HOH . D 4 HOH A 47 1047 243 HOH HOH . D 4 HOH A 48 1048 59 HOH HOH . D 4 HOH A 49 1049 130 HOH HOH . D 4 HOH A 50 1050 53 HOH HOH . D 4 HOH A 51 1051 96 HOH HOH . D 4 HOH A 52 1052 86 HOH HOH . D 4 HOH A 53 1053 148 HOH HOH . D 4 HOH A 54 1054 90 HOH HOH . D 4 HOH A 55 1055 16 HOH HOH . D 4 HOH A 56 1056 270 HOH HOH . D 4 HOH A 57 1057 23 HOH HOH . D 4 HOH A 58 1058 61 HOH HOH . D 4 HOH A 59 1059 195 HOH HOH . D 4 HOH A 60 1060 28 HOH HOH . D 4 HOH A 61 1061 188 HOH HOH . D 4 HOH A 62 1062 240 HOH HOH . D 4 HOH A 63 1063 75 HOH HOH . D 4 HOH A 64 1064 79 HOH HOH . D 4 HOH A 65 1065 134 HOH HOH . D 4 HOH A 66 1066 19 HOH HOH . D 4 HOH A 67 1067 136 HOH HOH . D 4 HOH A 68 1068 256 HOH HOH . D 4 HOH A 69 1069 183 HOH HOH . D 4 HOH A 70 1070 225 HOH HOH . D 4 HOH A 71 1071 147 HOH HOH . D 4 HOH A 72 1072 120 HOH HOH . D 4 HOH A 73 1073 356 HOH HOH . D 4 HOH A 74 1074 166 HOH HOH . D 4 HOH A 75 1075 233 HOH HOH . D 4 HOH A 76 1076 255 HOH HOH . D 4 HOH A 77 1077 129 HOH HOH . D 4 HOH A 78 1078 7 HOH HOH . D 4 HOH A 79 1079 197 HOH HOH . D 4 HOH A 80 1080 119 HOH HOH . D 4 HOH A 81 1081 159 HOH HOH . D 4 HOH A 82 1082 93 HOH HOH . D 4 HOH A 83 1083 164 HOH HOH . D 4 HOH A 84 1084 45 HOH HOH . D 4 HOH A 85 1085 330 HOH HOH . D 4 HOH A 86 1086 187 HOH HOH . D 4 HOH A 87 1087 257 HOH HOH . D 4 HOH A 88 1088 311 HOH HOH . D 4 HOH A 89 1089 208 HOH HOH . D 4 HOH A 90 1090 6 HOH HOH . D 4 HOH A 91 1091 18 HOH HOH . D 4 HOH A 92 1092 50 HOH HOH . D 4 HOH A 93 1093 331 HOH HOH . D 4 HOH A 94 1094 301 HOH HOH . D 4 HOH A 95 1095 145 HOH HOH . D 4 HOH A 96 1096 327 HOH HOH . D 4 HOH A 97 1097 56 HOH HOH . D 4 HOH A 98 1098 64 HOH HOH . D 4 HOH A 99 1099 194 HOH HOH . D 4 HOH A 100 1100 143 HOH HOH . D 4 HOH A 101 1101 54 HOH HOH . D 4 HOH A 102 1102 29 HOH HOH . D 4 HOH A 103 1103 191 HOH HOH . D 4 HOH A 104 1104 156 HOH HOH . D 4 HOH A 105 1105 122 HOH HOH . D 4 HOH A 106 1106 11 HOH HOH . D 4 HOH A 107 1107 1 HOH HOH . D 4 HOH A 108 1108 36 HOH HOH . D 4 HOH A 109 1109 153 HOH HOH . D 4 HOH A 110 1110 206 HOH HOH . D 4 HOH A 111 1111 118 HOH HOH . D 4 HOH A 112 1112 33 HOH HOH . D 4 HOH A 113 1113 27 HOH HOH . D 4 HOH A 114 1114 74 HOH HOH . D 4 HOH A 115 1115 226 HOH HOH . D 4 HOH A 116 1116 92 HOH HOH . D 4 HOH A 117 1117 97 HOH HOH . D 4 HOH A 118 1118 10 HOH HOH . D 4 HOH A 119 1119 135 HOH HOH . D 4 HOH A 120 1120 128 HOH HOH . D 4 HOH A 121 1121 81 HOH HOH . D 4 HOH A 122 1122 108 HOH HOH . D 4 HOH A 123 1123 262 HOH HOH . D 4 HOH A 124 1124 251 HOH HOH . D 4 HOH A 125 1125 216 HOH HOH . D 4 HOH A 126 1126 342 HOH HOH . D 4 HOH A 127 1127 78 HOH HOH . D 4 HOH A 128 1128 89 HOH HOH . D 4 HOH A 129 1129 367 HOH HOH . D 4 HOH A 130 1130 281 HOH HOH . D 4 HOH A 131 1131 37 HOH HOH . D 4 HOH A 132 1132 14 HOH HOH . D 4 HOH A 133 1133 84 HOH HOH . D 4 HOH A 134 1134 91 HOH HOH . D 4 HOH A 135 1135 335 HOH HOH . D 4 HOH A 136 1136 163 HOH HOH . D 4 HOH A 137 1137 376 HOH HOH . D 4 HOH A 138 1138 17 HOH HOH . D 4 HOH A 139 1139 55 HOH HOH . D 4 HOH A 140 1140 162 HOH HOH . D 4 HOH A 141 1141 34 HOH HOH . D 4 HOH A 142 1142 30 HOH HOH . D 4 HOH A 143 1143 117 HOH HOH . D 4 HOH A 144 1144 160 HOH HOH . D 4 HOH A 145 1145 241 HOH HOH . D 4 HOH A 146 1146 212 HOH HOH . D 4 HOH A 147 1147 321 HOH HOH . D 4 HOH A 148 1148 41 HOH HOH . D 4 HOH A 149 1149 252 HOH HOH . D 4 HOH A 150 1150 110 HOH HOH . D 4 HOH A 151 1151 181 HOH HOH . D 4 HOH A 152 1152 109 HOH HOH . D 4 HOH A 153 1153 38 HOH HOH . D 4 HOH A 154 1154 214 HOH HOH . D 4 HOH A 155 1155 95 HOH HOH . D 4 HOH A 156 1156 343 HOH HOH . D 4 HOH A 157 1157 8 HOH HOH . D 4 HOH A 158 1158 248 HOH HOH . D 4 HOH A 159 1159 260 HOH HOH . D 4 HOH A 160 1160 106 HOH HOH . D 4 HOH A 161 1161 238 HOH HOH . D 4 HOH A 162 1162 9 HOH HOH . D 4 HOH A 163 1163 48 HOH HOH . D 4 HOH A 164 1164 144 HOH HOH . D 4 HOH A 165 1165 57 HOH HOH . D 4 HOH A 166 1166 357 HOH HOH . D 4 HOH A 167 1167 245 HOH HOH . D 4 HOH A 168 1168 138 HOH HOH . D 4 HOH A 169 1169 189 HOH HOH . D 4 HOH A 170 1170 154 HOH HOH . D 4 HOH A 171 1171 210 HOH HOH . D 4 HOH A 172 1172 58 HOH HOH . D 4 HOH A 173 1173 3 HOH HOH . D 4 HOH A 174 1174 198 HOH HOH . D 4 HOH A 175 1175 111 HOH HOH . D 4 HOH A 176 1176 165 HOH HOH . D 4 HOH A 177 1177 146 HOH HOH . D 4 HOH A 178 1178 77 HOH HOH . D 4 HOH A 179 1179 123 HOH HOH . D 4 HOH A 180 1180 126 HOH HOH . D 4 HOH A 181 1181 337 HOH HOH . D 4 HOH A 182 1182 369 HOH HOH . D 4 HOH A 183 1183 176 HOH HOH . D 4 HOH A 184 1184 329 HOH HOH . D 4 HOH A 185 1185 254 HOH HOH . D 4 HOH A 186 1186 112 HOH HOH . D 4 HOH A 187 1187 73 HOH HOH . D 4 HOH A 188 1188 211 HOH HOH . D 4 HOH A 189 1189 116 HOH HOH . D 4 HOH A 190 1190 267 HOH HOH . D 4 HOH A 191 1191 152 HOH HOH . D 4 HOH A 192 1192 184 HOH HOH . D 4 HOH A 193 1193 272 HOH HOH . D 4 HOH A 194 1194 68 HOH HOH . D 4 HOH A 195 1195 32 HOH HOH . D 4 HOH A 196 1196 328 HOH HOH . D 4 HOH A 197 1197 83 HOH HOH . D 4 HOH A 198 1198 374 HOH HOH . D 4 HOH A 199 1199 178 HOH HOH . D 4 HOH A 200 1200 40 HOH HOH . D 4 HOH A 201 1201 113 HOH HOH . D 4 HOH A 202 1202 114 HOH HOH . D 4 HOH A 203 1203 326 HOH HOH . D 4 HOH A 204 1204 51 HOH HOH . D 4 HOH A 205 1205 121 HOH HOH . D 4 HOH A 206 1206 341 HOH HOH . D 4 HOH A 207 1207 167 HOH HOH . D 4 HOH A 208 1208 25 HOH HOH . D 4 HOH A 209 1209 141 HOH HOH . D 4 HOH A 210 1210 365 HOH HOH . D 4 HOH A 211 1211 232 HOH HOH . D 4 HOH A 212 1212 378 HOH HOH . D 4 HOH A 213 1213 131 HOH HOH . D 4 HOH A 214 1214 127 HOH HOH . D 4 HOH A 215 1215 169 HOH HOH . D 4 HOH A 216 1216 43 HOH HOH . D 4 HOH A 217 1217 370 HOH HOH . D 4 HOH A 218 1218 2 HOH HOH . D 4 HOH A 219 1219 52 HOH HOH . D 4 HOH A 220 1220 5 HOH HOH . D 4 HOH A 221 1221 280 HOH HOH . D 4 HOH A 222 1222 20 HOH HOH . D 4 HOH A 223 1223 44 HOH HOH . D 4 HOH A 224 1224 379 HOH HOH . D 4 HOH A 225 1225 72 HOH HOH . D 4 HOH A 226 1226 220 HOH HOH . D 4 HOH A 227 1227 70 HOH HOH . D 4 HOH A 228 1228 172 HOH HOH . D 4 HOH A 229 1229 192 HOH HOH . D 4 HOH A 230 1230 151 HOH HOH . D 4 HOH A 231 1231 12 HOH HOH . D 4 HOH A 232 1232 373 HOH HOH . D 4 HOH A 233 1233 305 HOH HOH . D 4 HOH A 234 1234 171 HOH HOH . D 4 HOH A 235 1235 103 HOH HOH . D 4 HOH A 236 1236 295 HOH HOH . D 4 HOH A 237 1237 199 HOH HOH . D 4 HOH A 238 1238 150 HOH HOH . D 4 HOH A 239 1239 375 HOH HOH . D 4 HOH A 240 1240 24 HOH HOH . D 4 HOH A 241 1241 334 HOH HOH . D 4 HOH A 242 1242 221 HOH HOH . D 4 HOH A 243 1243 39 HOH HOH . D 4 HOH A 244 1244 246 HOH HOH . D 4 HOH A 245 1245 186 HOH HOH . D 4 HOH A 246 1246 88 HOH HOH . D 4 HOH A 247 1247 231 HOH HOH . D 4 HOH A 248 1248 268 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . B 2 24.729 25.754 30.398 1 18.9 ? N1 PLP 901 A 1 HETATM 2 C C2 PLP . . . B 2 23.62 25.032 30.609 1 17.47 ? C2 PLP 901 A 1 HETATM 3 C C2A PLP . . . B 2 22.684 25.41 31.71 1 20.67 ? C2A PLP 901 A 1 HETATM 4 C C3 PLP . . . B 2 23.358 23.832 29.915 1 16.79 ? C3 PLP 901 A 1 HETATM 5 O O3 PLP . . . B 2 22.284 23.052 30.18 1 18.68 ? O3 PLP 901 A 1 HETATM 6 C C4 PLP . . . B 2 24.271 23.417 28.85 1 17.8 ? C4 PLP 901 A 1 HETATM 7 C C4A PLP . . . B 2 24.032 22.186 28.038 1 17.46 ? C4A PLP 901 A 1 HETATM 8 C C5 PLP . . . B 2 25.453 24.246 28.662 1 17.66 ? C5 PLP 901 A 1 HETATM 9 C C6 PLP . . . B 2 25.606 25.388 29.435 1 18.73 ? C6 PLP 901 A 1 HETATM 10 C C5A PLP . . . B 2 26.443 23.978 27.533 1 19.89 ? C5A PLP 901 A 1 HETATM 11 O O4P PLP . . . B 2 25.935 24.644 26.33 1 19.48 ? O4P PLP 901 A 1 HETATM 12 P P PLP . . . B 2 27.012 24.902 25.106 1 20.88 ? P PLP 901 A 1 HETATM 13 O O1P PLP . . . B 2 26.102 25.508 24.08 1 21.91 ? O1P PLP 901 A 1 HETATM 14 O O2P PLP . . . B 2 28.071 25.803 25.686 1 19.6 ? O2P PLP 901 A 1 HETATM 15 O O3P PLP . . . B 2 27.557 23.541 24.716 1 20.25 ? O3P PLP 901 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #