data_6F3U # _model_server_result.job_id r_I9DJyN8MrBFvdrNCui3g _model_server_result.datetime_utc '2024-10-13 07:26:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6f3u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 6F3U # _exptl.entry_id 6F3U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6F3U _cell.length_a 128.595 _cell.length_b 128.595 _cell.length_c 116.648 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6F3U _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 116.648 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 681 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 680 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 901 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.424 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 346 n y N1 C6 PLP sing 347 n y C2 C2A PLP sing 348 n n C2 C3 PLP sing 349 n y C2A H2A1 PLP sing 350 n n C2A H2A2 PLP sing 351 n n C2A H2A3 PLP sing 352 n n C3 O3 PLP sing 353 n n C3 C4 PLP doub 354 n y O3 HO3 PLP sing 355 n n C4 C4A PLP sing 356 n n C4 C5 PLP sing 357 n y C4A O4A PLP doub 358 n n C4A H4A PLP sing 359 n n C5 C6 PLP doub 360 n y C5 C5A PLP sing 361 n n C6 H6 PLP sing 362 n n C5A O4P PLP sing 363 n n C5A H5A1 PLP sing 364 n n C5A H5A2 PLP sing 365 n n O4P P PLP sing 366 n n P O1P PLP doub 367 n n P O2P PLP sing 368 n n P O3P PLP sing 369 n n O2P HOP2 PLP sing 370 n n O3P HOP3 PLP sing 371 n n # _atom_sites.entry_id 6F3U _atom_sites.fract_transf_matrix[1][1] 0.007776 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007776 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008573 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 901 903 PLP PLP . C 3 IMP A 1 902 1 IMP IMP . D 4 CNK A 1 903 2 CNK 10h . E 5 HOH A 1 1001 87 HOH HOH . E 5 HOH A 2 1002 137 HOH HOH . E 5 HOH A 3 1003 96 HOH HOH . E 5 HOH A 4 1004 158 HOH HOH . E 5 HOH A 5 1005 19 HOH HOH . E 5 HOH A 6 1006 46 HOH HOH . E 5 HOH A 7 1007 13 HOH HOH . E 5 HOH A 8 1008 235 HOH HOH . E 5 HOH A 9 1009 65 HOH HOH . E 5 HOH A 10 1010 142 HOH HOH . E 5 HOH A 11 1011 31 HOH HOH . E 5 HOH A 12 1012 23 HOH HOH . E 5 HOH A 13 1013 182 HOH HOH . E 5 HOH A 14 1014 175 HOH HOH . E 5 HOH A 15 1015 130 HOH HOH . E 5 HOH A 16 1016 53 HOH HOH . E 5 HOH A 17 1017 45 HOH HOH . E 5 HOH A 18 1018 179 HOH HOH . E 5 HOH A 19 1019 240 HOH HOH . E 5 HOH A 20 1020 168 HOH HOH . E 5 HOH A 21 1021 1 HOH HOH . E 5 HOH A 22 1022 16 HOH HOH . E 5 HOH A 23 1023 161 HOH HOH . E 5 HOH A 24 1024 343 HOH HOH . E 5 HOH A 25 1025 119 HOH HOH . E 5 HOH A 26 1026 132 HOH HOH . E 5 HOH A 27 1027 209 HOH HOH . E 5 HOH A 28 1028 122 HOH HOH . E 5 HOH A 29 1029 64 HOH HOH . E 5 HOH A 30 1030 243 HOH HOH . E 5 HOH A 31 1031 164 HOH HOH . E 5 HOH A 32 1032 129 HOH HOH . E 5 HOH A 33 1033 67 HOH HOH . E 5 HOH A 34 1034 22 HOH HOH . E 5 HOH A 35 1035 133 HOH HOH . E 5 HOH A 36 1036 75 HOH HOH . E 5 HOH A 37 1037 311 HOH HOH . E 5 HOH A 38 1038 183 HOH HOH . E 5 HOH A 39 1039 339 HOH HOH . E 5 HOH A 40 1040 107 HOH HOH . E 5 HOH A 41 1041 7 HOH HOH . E 5 HOH A 42 1042 264 HOH HOH . E 5 HOH A 43 1043 98 HOH HOH . E 5 HOH A 44 1044 128 HOH HOH . E 5 HOH A 45 1045 333 HOH HOH . E 5 HOH A 46 1046 85 HOH HOH . E 5 HOH A 47 1047 50 HOH HOH . E 5 HOH A 48 1048 21 HOH HOH . E 5 HOH A 49 1049 79 HOH HOH . E 5 HOH A 50 1050 255 HOH HOH . E 5 HOH A 51 1051 6 HOH HOH . E 5 HOH A 52 1052 340 HOH HOH . E 5 HOH A 53 1053 4 HOH HOH . E 5 HOH A 54 1054 59 HOH HOH . E 5 HOH A 55 1055 54 HOH HOH . E 5 HOH A 56 1056 134 HOH HOH . E 5 HOH A 57 1057 352 HOH HOH . E 5 HOH A 58 1058 256 HOH HOH . E 5 HOH A 59 1059 120 HOH HOH . E 5 HOH A 60 1060 35 HOH HOH . E 5 HOH A 61 1061 216 HOH HOH . E 5 HOH A 62 1062 34 HOH HOH . E 5 HOH A 63 1063 203 HOH HOH . E 5 HOH A 64 1064 288 HOH HOH . E 5 HOH A 65 1065 144 HOH HOH . E 5 HOH A 66 1066 341 HOH HOH . E 5 HOH A 67 1067 143 HOH HOH . E 5 HOH A 68 1068 187 HOH HOH . E 5 HOH A 69 1069 327 HOH HOH . E 5 HOH A 70 1070 166 HOH HOH . E 5 HOH A 71 1071 110 HOH HOH . E 5 HOH A 72 1072 148 HOH HOH . E 5 HOH A 73 1073 153 HOH HOH . E 5 HOH A 74 1074 41 HOH HOH . E 5 HOH A 75 1075 251 HOH HOH . E 5 HOH A 76 1076 92 HOH HOH . E 5 HOH A 77 1077 208 HOH HOH . E 5 HOH A 78 1078 37 HOH HOH . E 5 HOH A 79 1079 135 HOH HOH . E 5 HOH A 80 1080 136 HOH HOH . E 5 HOH A 81 1081 337 HOH HOH . E 5 HOH A 82 1082 117 HOH HOH . E 5 HOH A 83 1083 263 HOH HOH . E 5 HOH A 84 1084 330 HOH HOH . E 5 HOH A 85 1085 196 HOH HOH . E 5 HOH A 86 1086 17 HOH HOH . E 5 HOH A 87 1087 234 HOH HOH . E 5 HOH A 88 1088 56 HOH HOH . E 5 HOH A 89 1089 11 HOH HOH . E 5 HOH A 90 1090 30 HOH HOH . E 5 HOH A 91 1091 18 HOH HOH . E 5 HOH A 92 1092 346 HOH HOH . E 5 HOH A 93 1093 14 HOH HOH . E 5 HOH A 94 1094 90 HOH HOH . E 5 HOH A 95 1095 29 HOH HOH . E 5 HOH A 96 1096 336 HOH HOH . E 5 HOH A 97 1097 89 HOH HOH . E 5 HOH A 98 1098 248 HOH HOH . E 5 HOH A 99 1099 329 HOH HOH . E 5 HOH A 100 1100 108 HOH HOH . E 5 HOH A 101 1101 206 HOH HOH . E 5 HOH A 102 1102 160 HOH HOH . E 5 HOH A 103 1103 147 HOH HOH . E 5 HOH A 104 1104 97 HOH HOH . E 5 HOH A 105 1105 33 HOH HOH . E 5 HOH A 106 1106 10 HOH HOH . E 5 HOH A 107 1107 49 HOH HOH . E 5 HOH A 108 1108 194 HOH HOH . E 5 HOH A 109 1109 140 HOH HOH . E 5 HOH A 110 1110 123 HOH HOH . E 5 HOH A 111 1111 93 HOH HOH . E 5 HOH A 112 1112 321 HOH HOH . E 5 HOH A 113 1113 118 HOH HOH . E 5 HOH A 114 1114 163 HOH HOH . E 5 HOH A 115 1115 95 HOH HOH . E 5 HOH A 116 1116 260 HOH HOH . E 5 HOH A 117 1117 38 HOH HOH . E 5 HOH A 118 1118 28 HOH HOH . E 5 HOH A 119 1119 151 HOH HOH . E 5 HOH A 120 1120 214 HOH HOH . E 5 HOH A 121 1121 112 HOH HOH . E 5 HOH A 122 1122 176 HOH HOH . E 5 HOH A 123 1123 162 HOH HOH . E 5 HOH A 124 1124 338 HOH HOH . E 5 HOH A 125 1125 165 HOH HOH . E 5 HOH A 126 1126 180 HOH HOH . E 5 HOH A 127 1127 146 HOH HOH . E 5 HOH A 128 1128 351 HOH HOH . E 5 HOH A 129 1129 9 HOH HOH . E 5 HOH A 130 1130 74 HOH HOH . E 5 HOH A 131 1131 111 HOH HOH . E 5 HOH A 132 1132 48 HOH HOH . E 5 HOH A 133 1133 154 HOH HOH . E 5 HOH A 134 1134 84 HOH HOH . E 5 HOH A 135 1135 202 HOH HOH . E 5 HOH A 136 1136 15 HOH HOH . E 5 HOH A 137 1137 73 HOH HOH . E 5 HOH A 138 1138 347 HOH HOH . E 5 HOH A 139 1139 58 HOH HOH . E 5 HOH A 140 1140 342 HOH HOH . E 5 HOH A 141 1141 3 HOH HOH . E 5 HOH A 142 1142 116 HOH HOH . E 5 HOH A 143 1143 328 HOH HOH . E 5 HOH A 144 1144 152 HOH HOH . E 5 HOH A 145 1145 191 HOH HOH . E 5 HOH A 146 1146 57 HOH HOH . E 5 HOH A 147 1147 201 HOH HOH . E 5 HOH A 148 1148 52 HOH HOH . E 5 HOH A 149 1149 55 HOH HOH . E 5 HOH A 150 1150 344 HOH HOH . E 5 HOH A 151 1151 350 HOH HOH . E 5 HOH A 152 1152 210 HOH HOH . E 5 HOH A 153 1153 5 HOH HOH . E 5 HOH A 154 1154 305 HOH HOH . E 5 HOH A 155 1155 345 HOH HOH . E 5 HOH A 156 1156 126 HOH HOH . E 5 HOH A 157 1157 198 HOH HOH . E 5 HOH A 158 1158 109 HOH HOH . E 5 HOH A 159 1159 189 HOH HOH . E 5 HOH A 160 1160 141 HOH HOH . E 5 HOH A 161 1161 332 HOH HOH . E 5 HOH A 162 1162 20 HOH HOH . E 5 HOH A 163 1163 44 HOH HOH . E 5 HOH A 164 1164 280 HOH HOH . E 5 HOH A 165 1165 171 HOH HOH . E 5 HOH A 166 1166 138 HOH HOH . E 5 HOH A 167 1167 8 HOH HOH . E 5 HOH A 168 1168 51 HOH HOH . E 5 HOH A 169 1169 169 HOH HOH . E 5 HOH A 170 1170 254 HOH HOH . E 5 HOH A 171 1171 113 HOH HOH . E 5 HOH A 172 1172 106 HOH HOH . E 5 HOH A 173 1173 232 HOH HOH . E 5 HOH A 174 1174 167 HOH HOH . E 5 HOH A 175 1175 131 HOH HOH . E 5 HOH A 176 1176 83 HOH HOH . E 5 HOH A 177 1177 40 HOH HOH . E 5 HOH A 178 1178 43 HOH HOH . E 5 HOH A 179 1179 127 HOH HOH . E 5 HOH A 180 1180 25 HOH HOH . E 5 HOH A 181 1181 184 HOH HOH . E 5 HOH A 182 1182 211 HOH HOH . E 5 HOH A 183 1183 349 HOH HOH . E 5 HOH A 184 1184 121 HOH HOH . E 5 HOH A 185 1185 178 HOH HOH . E 5 HOH A 186 1186 72 HOH HOH . E 5 HOH A 187 1187 70 HOH HOH . E 5 HOH A 188 1188 150 HOH HOH . E 5 HOH A 189 1189 103 HOH HOH . E 5 HOH A 190 1190 12 HOH HOH . E 5 HOH A 191 1191 267 HOH HOH . E 5 HOH A 192 1192 2 HOH HOH . E 5 HOH A 193 1193 217 HOH HOH . E 5 HOH A 194 1194 258 HOH HOH . E 5 HOH A 195 1195 331 HOH HOH . E 5 HOH A 196 1196 242 HOH HOH . E 5 HOH A 197 1197 199 HOH HOH . E 5 HOH A 198 1198 246 HOH HOH . E 5 HOH A 199 1199 326 HOH HOH . E 5 HOH A 200 1200 39 HOH HOH . E 5 HOH A 201 1201 186 HOH HOH . E 5 HOH A 202 1202 268 HOH HOH . E 5 HOH A 203 1203 348 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . B 2 24.696 25.801 30.467 1 21.38 ? N1 PLP 901 A 1 HETATM 2 C C2 PLP . . . B 2 23.566 25.095 30.72 1 21.19 ? C2 PLP 901 A 1 HETATM 3 C C2A PLP . . . B 2 22.657 25.54 31.81 1 22.66 ? C2A PLP 901 A 1 HETATM 4 C C3 PLP . . . B 2 23.254 23.875 29.958 1 22.37 ? C3 PLP 901 A 1 HETATM 5 O O3 PLP . . . B 2 22.133 23.131 30.202 1 24.01 ? O3 PLP 901 A 1 HETATM 6 C C4 PLP . . . B 2 24.212 23.484 28.908 1 21.99 ? C4 PLP 901 A 1 HETATM 7 C C4A PLP . . . B 2 24.034 22.272 28.026 1 23.97 ? C4A PLP 901 A 1 HETATM 8 C C5 PLP . . . B 2 25.403 24.34 28.709 1 21.65 ? C5 PLP 901 A 1 HETATM 9 C C6 PLP . . . B 2 25.571 25.469 29.507 1 21.51 ? C6 PLP 901 A 1 HETATM 10 C C5A PLP . . . B 2 26.412 24.037 27.615 1 22.53 ? C5A PLP 901 A 1 HETATM 11 O O4P PLP . . . B 2 25.935 24.662 26.397 1 21.19 ? O4P PLP 901 A 1 HETATM 12 P P PLP . . . B 2 26.998 24.97 25.201 1 22.4 ? P PLP 901 A 1 HETATM 13 O O1P PLP . . . B 2 26.113 25.588 24.164 1 22.43 ? O1P PLP 901 A 1 HETATM 14 O O2P PLP . . . B 2 27.981 25.92 25.849 1 20.31 ? O2P PLP 901 A 1 HETATM 15 O O3P PLP . . . B 2 27.552 23.608 24.805 1 20.71 ? O3P PLP 901 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 15 #