data_6F3U # _model_server_result.job_id c5QLtaZQGws_2VpgsL33eg _model_server_result.datetime_utc '2024-11-30 04:09:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6f3u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":902}' # _entry.id 6F3U # _exptl.entry_id 6F3U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6F3U _cell.length_a 128.595 _cell.length_b 128.595 _cell.length_c 116.648 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6F3U _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 116.648 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 681 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 680 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 901 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.424 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 221 n n P O2P IMP sing 222 n n P O3P IMP sing 223 n n P O5' IMP sing 224 n n O2P HOP2 IMP sing 225 n n O3P HOP3 IMP sing 226 n n O5' C5' IMP sing 227 n n C5' C4' IMP sing 228 n n C5' "H5'1" IMP sing 229 n n C5' "H5'2" IMP sing 230 n n C4' O4' IMP sing 231 n n C4' C3' IMP sing 232 n n C4' H4' IMP sing 233 n n O4' C1' IMP sing 234 n n C3' O3' IMP sing 235 n n C3' C2' IMP sing 236 n n C3' H3' IMP sing 237 n n O3' HO3' IMP sing 238 n n C2' O2' IMP sing 239 n n C2' C1' IMP sing 240 n n C2' H2' IMP sing 241 n n O2' HO2' IMP sing 242 n n C1' N9 IMP sing 243 n n C1' H1' IMP sing 244 n n N9 C8 IMP sing 245 n y N9 C4 IMP sing 246 n y C8 N7 IMP doub 247 n y C8 H8 IMP sing 248 n n N7 C5 IMP sing 249 n y C5 C6 IMP sing 250 n n C5 C4 IMP doub 251 n y C6 O6 IMP doub 252 n n C6 N1 IMP sing 253 n n N1 C2 IMP sing 254 n n N1 HN1 IMP sing 255 n n C2 N3 IMP doub 256 n n C2 H2 IMP sing 257 n n N3 C4 IMP sing 258 n n # _atom_sites.entry_id 6F3U _atom_sites.fract_transf_matrix[1][1] 0.007776 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007776 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008573 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 901 903 PLP PLP . C 3 IMP A 1 902 1 IMP IMP . D 4 CNK A 1 903 2 CNK 10h . E 5 HOH A 1 1001 87 HOH HOH . E 5 HOH A 2 1002 137 HOH HOH . E 5 HOH A 3 1003 96 HOH HOH . E 5 HOH A 4 1004 158 HOH HOH . E 5 HOH A 5 1005 19 HOH HOH . E 5 HOH A 6 1006 46 HOH HOH . E 5 HOH A 7 1007 13 HOH HOH . E 5 HOH A 8 1008 235 HOH HOH . E 5 HOH A 9 1009 65 HOH HOH . E 5 HOH A 10 1010 142 HOH HOH . E 5 HOH A 11 1011 31 HOH HOH . E 5 HOH A 12 1012 23 HOH HOH . E 5 HOH A 13 1013 182 HOH HOH . E 5 HOH A 14 1014 175 HOH HOH . E 5 HOH A 15 1015 130 HOH HOH . E 5 HOH A 16 1016 53 HOH HOH . E 5 HOH A 17 1017 45 HOH HOH . E 5 HOH A 18 1018 179 HOH HOH . E 5 HOH A 19 1019 240 HOH HOH . E 5 HOH A 20 1020 168 HOH HOH . E 5 HOH A 21 1021 1 HOH HOH . E 5 HOH A 22 1022 16 HOH HOH . E 5 HOH A 23 1023 161 HOH HOH . E 5 HOH A 24 1024 343 HOH HOH . E 5 HOH A 25 1025 119 HOH HOH . E 5 HOH A 26 1026 132 HOH HOH . E 5 HOH A 27 1027 209 HOH HOH . E 5 HOH A 28 1028 122 HOH HOH . E 5 HOH A 29 1029 64 HOH HOH . E 5 HOH A 30 1030 243 HOH HOH . E 5 HOH A 31 1031 164 HOH HOH . E 5 HOH A 32 1032 129 HOH HOH . E 5 HOH A 33 1033 67 HOH HOH . E 5 HOH A 34 1034 22 HOH HOH . E 5 HOH A 35 1035 133 HOH HOH . E 5 HOH A 36 1036 75 HOH HOH . E 5 HOH A 37 1037 311 HOH HOH . E 5 HOH A 38 1038 183 HOH HOH . E 5 HOH A 39 1039 339 HOH HOH . E 5 HOH A 40 1040 107 HOH HOH . E 5 HOH A 41 1041 7 HOH HOH . E 5 HOH A 42 1042 264 HOH HOH . E 5 HOH A 43 1043 98 HOH HOH . E 5 HOH A 44 1044 128 HOH HOH . E 5 HOH A 45 1045 333 HOH HOH . E 5 HOH A 46 1046 85 HOH HOH . E 5 HOH A 47 1047 50 HOH HOH . E 5 HOH A 48 1048 21 HOH HOH . E 5 HOH A 49 1049 79 HOH HOH . E 5 HOH A 50 1050 255 HOH HOH . E 5 HOH A 51 1051 6 HOH HOH . E 5 HOH A 52 1052 340 HOH HOH . E 5 HOH A 53 1053 4 HOH HOH . E 5 HOH A 54 1054 59 HOH HOH . E 5 HOH A 55 1055 54 HOH HOH . E 5 HOH A 56 1056 134 HOH HOH . E 5 HOH A 57 1057 352 HOH HOH . E 5 HOH A 58 1058 256 HOH HOH . E 5 HOH A 59 1059 120 HOH HOH . E 5 HOH A 60 1060 35 HOH HOH . E 5 HOH A 61 1061 216 HOH HOH . E 5 HOH A 62 1062 34 HOH HOH . E 5 HOH A 63 1063 203 HOH HOH . E 5 HOH A 64 1064 288 HOH HOH . E 5 HOH A 65 1065 144 HOH HOH . E 5 HOH A 66 1066 341 HOH HOH . E 5 HOH A 67 1067 143 HOH HOH . E 5 HOH A 68 1068 187 HOH HOH . E 5 HOH A 69 1069 327 HOH HOH . E 5 HOH A 70 1070 166 HOH HOH . E 5 HOH A 71 1071 110 HOH HOH . E 5 HOH A 72 1072 148 HOH HOH . E 5 HOH A 73 1073 153 HOH HOH . E 5 HOH A 74 1074 41 HOH HOH . E 5 HOH A 75 1075 251 HOH HOH . E 5 HOH A 76 1076 92 HOH HOH . E 5 HOH A 77 1077 208 HOH HOH . E 5 HOH A 78 1078 37 HOH HOH . E 5 HOH A 79 1079 135 HOH HOH . E 5 HOH A 80 1080 136 HOH HOH . E 5 HOH A 81 1081 337 HOH HOH . E 5 HOH A 82 1082 117 HOH HOH . E 5 HOH A 83 1083 263 HOH HOH . E 5 HOH A 84 1084 330 HOH HOH . E 5 HOH A 85 1085 196 HOH HOH . E 5 HOH A 86 1086 17 HOH HOH . E 5 HOH A 87 1087 234 HOH HOH . E 5 HOH A 88 1088 56 HOH HOH . E 5 HOH A 89 1089 11 HOH HOH . E 5 HOH A 90 1090 30 HOH HOH . E 5 HOH A 91 1091 18 HOH HOH . E 5 HOH A 92 1092 346 HOH HOH . E 5 HOH A 93 1093 14 HOH HOH . E 5 HOH A 94 1094 90 HOH HOH . E 5 HOH A 95 1095 29 HOH HOH . E 5 HOH A 96 1096 336 HOH HOH . E 5 HOH A 97 1097 89 HOH HOH . E 5 HOH A 98 1098 248 HOH HOH . E 5 HOH A 99 1099 329 HOH HOH . E 5 HOH A 100 1100 108 HOH HOH . E 5 HOH A 101 1101 206 HOH HOH . E 5 HOH A 102 1102 160 HOH HOH . E 5 HOH A 103 1103 147 HOH HOH . E 5 HOH A 104 1104 97 HOH HOH . E 5 HOH A 105 1105 33 HOH HOH . E 5 HOH A 106 1106 10 HOH HOH . E 5 HOH A 107 1107 49 HOH HOH . E 5 HOH A 108 1108 194 HOH HOH . E 5 HOH A 109 1109 140 HOH HOH . E 5 HOH A 110 1110 123 HOH HOH . E 5 HOH A 111 1111 93 HOH HOH . E 5 HOH A 112 1112 321 HOH HOH . E 5 HOH A 113 1113 118 HOH HOH . E 5 HOH A 114 1114 163 HOH HOH . E 5 HOH A 115 1115 95 HOH HOH . E 5 HOH A 116 1116 260 HOH HOH . E 5 HOH A 117 1117 38 HOH HOH . E 5 HOH A 118 1118 28 HOH HOH . E 5 HOH A 119 1119 151 HOH HOH . E 5 HOH A 120 1120 214 HOH HOH . E 5 HOH A 121 1121 112 HOH HOH . E 5 HOH A 122 1122 176 HOH HOH . E 5 HOH A 123 1123 162 HOH HOH . E 5 HOH A 124 1124 338 HOH HOH . E 5 HOH A 125 1125 165 HOH HOH . E 5 HOH A 126 1126 180 HOH HOH . E 5 HOH A 127 1127 146 HOH HOH . E 5 HOH A 128 1128 351 HOH HOH . E 5 HOH A 129 1129 9 HOH HOH . E 5 HOH A 130 1130 74 HOH HOH . E 5 HOH A 131 1131 111 HOH HOH . E 5 HOH A 132 1132 48 HOH HOH . E 5 HOH A 133 1133 154 HOH HOH . E 5 HOH A 134 1134 84 HOH HOH . E 5 HOH A 135 1135 202 HOH HOH . E 5 HOH A 136 1136 15 HOH HOH . E 5 HOH A 137 1137 73 HOH HOH . E 5 HOH A 138 1138 347 HOH HOH . E 5 HOH A 139 1139 58 HOH HOH . E 5 HOH A 140 1140 342 HOH HOH . E 5 HOH A 141 1141 3 HOH HOH . E 5 HOH A 142 1142 116 HOH HOH . E 5 HOH A 143 1143 328 HOH HOH . E 5 HOH A 144 1144 152 HOH HOH . E 5 HOH A 145 1145 191 HOH HOH . E 5 HOH A 146 1146 57 HOH HOH . E 5 HOH A 147 1147 201 HOH HOH . E 5 HOH A 148 1148 52 HOH HOH . E 5 HOH A 149 1149 55 HOH HOH . E 5 HOH A 150 1150 344 HOH HOH . E 5 HOH A 151 1151 350 HOH HOH . E 5 HOH A 152 1152 210 HOH HOH . E 5 HOH A 153 1153 5 HOH HOH . E 5 HOH A 154 1154 305 HOH HOH . E 5 HOH A 155 1155 345 HOH HOH . E 5 HOH A 156 1156 126 HOH HOH . E 5 HOH A 157 1157 198 HOH HOH . E 5 HOH A 158 1158 109 HOH HOH . E 5 HOH A 159 1159 189 HOH HOH . E 5 HOH A 160 1160 141 HOH HOH . E 5 HOH A 161 1161 332 HOH HOH . E 5 HOH A 162 1162 20 HOH HOH . E 5 HOH A 163 1163 44 HOH HOH . E 5 HOH A 164 1164 280 HOH HOH . E 5 HOH A 165 1165 171 HOH HOH . E 5 HOH A 166 1166 138 HOH HOH . E 5 HOH A 167 1167 8 HOH HOH . E 5 HOH A 168 1168 51 HOH HOH . E 5 HOH A 169 1169 169 HOH HOH . E 5 HOH A 170 1170 254 HOH HOH . E 5 HOH A 171 1171 113 HOH HOH . E 5 HOH A 172 1172 106 HOH HOH . E 5 HOH A 173 1173 232 HOH HOH . E 5 HOH A 174 1174 167 HOH HOH . E 5 HOH A 175 1175 131 HOH HOH . E 5 HOH A 176 1176 83 HOH HOH . E 5 HOH A 177 1177 40 HOH HOH . E 5 HOH A 178 1178 43 HOH HOH . E 5 HOH A 179 1179 127 HOH HOH . E 5 HOH A 180 1180 25 HOH HOH . E 5 HOH A 181 1181 184 HOH HOH . E 5 HOH A 182 1182 211 HOH HOH . E 5 HOH A 183 1183 349 HOH HOH . E 5 HOH A 184 1184 121 HOH HOH . E 5 HOH A 185 1185 178 HOH HOH . E 5 HOH A 186 1186 72 HOH HOH . E 5 HOH A 187 1187 70 HOH HOH . E 5 HOH A 188 1188 150 HOH HOH . E 5 HOH A 189 1189 103 HOH HOH . E 5 HOH A 190 1190 12 HOH HOH . E 5 HOH A 191 1191 267 HOH HOH . E 5 HOH A 192 1192 2 HOH HOH . E 5 HOH A 193 1193 217 HOH HOH . E 5 HOH A 194 1194 258 HOH HOH . E 5 HOH A 195 1195 331 HOH HOH . E 5 HOH A 196 1196 242 HOH HOH . E 5 HOH A 197 1197 199 HOH HOH . E 5 HOH A 198 1198 246 HOH HOH . E 5 HOH A 199 1199 326 HOH HOH . E 5 HOH A 200 1200 39 HOH HOH . E 5 HOH A 201 1201 186 HOH HOH . E 5 HOH A 202 1202 268 HOH HOH . E 5 HOH A 203 1203 348 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . C 3 30.914 2.492 51.77 0.8 75.96 ? P IMP 902 A 1 HETATM 2 O O1P IMP . . . C 3 31.805 1.757 50.798 0.8 66.59 ? O1P IMP 902 A 1 HETATM 3 O O2P IMP . . . C 3 30.554 3.907 51.381 0.8 65.62 ? O2P IMP 902 A 1 HETATM 4 O O3P IMP . . . C 3 31.354 2.357 53.208 0.8 80.44 ? O3P IMP 902 A 1 HETATM 5 O O5' IMP . . . C 3 29.517 1.699 51.629 0.8 83.89 ? O5' IMP 902 A 1 HETATM 6 C C5' IMP . . . C 3 28.806 1.116 52.721 0.8 86.18 ? C5' IMP 902 A 1 HETATM 7 C C4' IMP . . . C 3 27.935 -0.014 52.183 0.8 83.51 ? C4' IMP 902 A 1 HETATM 8 O O4' IMP . . . C 3 28.743 -1.167 51.911 0.8 78.46 ? O4' IMP 902 A 1 HETATM 9 C C3' IMP . . . C 3 26.851 -0.421 53.175 0.8 84.76 ? C3' IMP 902 A 1 HETATM 10 O O3' IMP . . . C 3 25.55 -0.079 52.673 0.8 83.66 ? O3' IMP 902 A 1 HETATM 11 C C2' IMP . . . C 3 27.035 -1.918 53.388 0.8 85.15 ? C2' IMP 902 A 1 HETATM 12 O O2' IMP . . . C 3 25.967 -2.69 52.825 0.8 87.16 ? O2' IMP 902 A 1 HETATM 13 C C1' IMP . . . C 3 28.358 -2.288 52.715 0.8 79.76 ? C1' IMP 902 A 1 HETATM 14 N N9 IMP . . . C 3 29.405 -2.619 53.728 0.8 76.83 ? N9 IMP 902 A 1 HETATM 15 C C8 IMP . . . C 3 30.56 -1.952 53.966 0.8 75.41 ? C8 IMP 902 A 1 HETATM 16 N N7 IMP . . . C 3 31.27 -2.544 54.965 0.8 78.11 ? N7 IMP 902 A 1 HETATM 17 C C5 IMP . . . C 3 30.569 -3.613 55.386 0.8 82.69 ? C5 IMP 902 A 1 HETATM 18 C C6 IMP . . . C 3 30.735 -4.684 56.407 0.8 83.5 ? C6 IMP 902 A 1 HETATM 19 O O6 IMP . . . C 3 31.746 -4.719 57.141 0.8 84.29 ? O6 IMP 902 A 1 HETATM 20 N N1 IMP . . . C 3 29.766 -5.616 56.52 0.8 84.43 ? N1 IMP 902 A 1 HETATM 21 C C2 IMP . . . C 3 28.66 -5.603 55.737 0.8 84.13 ? C2 IMP 902 A 1 HETATM 22 N N3 IMP . . . C 3 28.444 -4.662 54.788 0.8 85.46 ? N3 IMP 902 A 1 HETATM 23 C C4 IMP . . . C 3 29.344 -3.662 54.565 0.8 83.88 ? C4 IMP 902 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 454 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #