data_6F4N
#
_model_server_result.job_id            tE6u3SPx21nwJGgOTQPpAw 
_model_server_result.datetime_utc      '2024-11-24 11:10:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6f4n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":502}' 
#
_entry.id    6F4N 
#
_exptl.entry_id    6F4N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              146.098 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-OXOGLUTARIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6F4N 
_cell.length_a            68.002 
_cell.length_b            68.002 
_cell.length_c            267.898 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6F4N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 87 A CYS 232 1_555 B SG CYS 87 B CYS 232 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc1 A NE2 HIS 176 A HIS 321 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc2 A OD2 ASP 178 A ASP 323 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc3 A NE2 HIS 255 A HIS 400 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc4 C MN MN . A MN 501 1_555 D O1 AKG . A AKG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc5 C MN MN . A MN 501 1_555 D O5 AKG . A AKG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc6 C MN MN . A MN 501 1_555 G O HOH . A HOH 640 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc7 B NE2 HIS 176 B HIS 321 1_555 E MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc8 B OD2 ASP 178 B ASP 323 1_555 E MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc9 B NE2 HIS 255 B HIS 400 1_555 E MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc10 E MN MN . B MN 501 1_555 F O5 AKG . B AKG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc11 E MN MN . B MN 501 1_555 F O2 AKG . B AKG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? 
metalc ? metalc12 E MN MN . B MN 501 1_555 H O HOH . B HOH 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? 
#
_chem_comp.formula           'C5 H6 O5' 
_chem_comp.formula_weight    146.098 
_chem_comp.id                AKG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-OXOGLUTARIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 AKG doub 1 n n 
C1 O2 AKG sing 2 n n 
C1 C2 AKG sing 3 n n 
O2 HO2 AKG sing 4 n n 
C2 O5 AKG doub 5 n n 
C2 C3 AKG sing 6 n n 
C3 C4 AKG sing 7 n n 
C3 H31 AKG sing 8 n n 
C3 H32 AKG sing 9 n n 
C4 C5 AKG sing 10 n n 
C4 H41 AKG sing 11 n n 
C4 H42 AKG sing 12 n n 
C5 O3 AKG doub 13 n n 
C5 O4 AKG sing 14 n n 
O4 HO4 AKG sing 15 n n 
#
_atom_sites.entry_id                     6F4N 
_atom_sites.fract_transf_matrix[1][1]    0.014705 
_atom_sites.fract_transf_matrix[1][2]    0.00849 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01698 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003733 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MN A 1 501 501 MN MN . 
D 3 AKG A 1 502 601 AKG AKG . 
E 2 MN B 1 501 501 MN MN . 
F 3 AKG B 1 502 601 AKG AKG . 
G 4 HOH A 1 601 1237 HOH HOH . 
G 4 HOH A 2 602 1186 HOH HOH . 
G 4 HOH A 3 603 1064 HOH HOH . 
G 4 HOH A 4 604 1051 HOH HOH . 
G 4 HOH A 5 605 1240 HOH HOH . 
G 4 HOH A 6 606 1060 HOH HOH . 
G 4 HOH A 7 607 1023 HOH HOH . 
G 4 HOH A 8 608 1203 HOH HOH . 
G 4 HOH A 9 609 1035 HOH HOH . 
G 4 HOH A 10 610 1144 HOH HOH . 
G 4 HOH A 11 611 1053 HOH HOH . 
G 4 HOH A 12 612 1047 HOH HOH . 
G 4 HOH A 13 613 1165 HOH HOH . 
G 4 HOH A 14 614 1003 HOH HOH . 
G 4 HOH A 15 615 1159 HOH HOH . 
G 4 HOH A 16 616 1061 HOH HOH . 
G 4 HOH A 17 617 1063 HOH HOH . 
G 4 HOH A 18 618 1054 HOH HOH . 
G 4 HOH A 19 619 1037 HOH HOH . 
G 4 HOH A 20 620 1166 HOH HOH . 
G 4 HOH A 21 621 1031 HOH HOH . 
G 4 HOH A 22 622 1040 HOH HOH . 
G 4 HOH A 23 623 1001 HOH HOH . 
G 4 HOH A 24 624 1198 HOH HOH . 
G 4 HOH A 25 625 1012 HOH HOH . 
G 4 HOH A 26 626 1002 HOH HOH . 
G 4 HOH A 27 627 1005 HOH HOH . 
G 4 HOH A 28 628 1086 HOH HOH . 
G 4 HOH A 29 629 1189 HOH HOH . 
G 4 HOH A 30 630 1172 HOH HOH . 
G 4 HOH A 31 631 1190 HOH HOH . 
G 4 HOH A 32 632 1062 HOH HOH . 
G 4 HOH A 33 633 1202 HOH HOH . 
G 4 HOH A 34 634 1006 HOH HOH . 
G 4 HOH A 35 635 1066 HOH HOH . 
G 4 HOH A 36 636 1049 HOH HOH . 
G 4 HOH A 37 637 1007 HOH HOH . 
G 4 HOH A 38 638 1029 HOH HOH . 
G 4 HOH A 39 639 1056 HOH HOH . 
G 4 HOH A 40 640 1004 HOH HOH . 
G 4 HOH A 41 641 1055 HOH HOH . 
G 4 HOH A 42 642 1028 HOH HOH . 
G 4 HOH A 43 643 1025 HOH HOH . 
G 4 HOH A 44 644 1121 HOH HOH . 
G 4 HOH A 45 645 1010 HOH HOH . 
G 4 HOH A 46 646 1137 HOH HOH . 
G 4 HOH A 47 647 1128 HOH HOH . 
G 4 HOH A 48 648 1022 HOH HOH . 
G 4 HOH A 49 649 1101 HOH HOH . 
G 4 HOH A 50 650 1207 HOH HOH . 
G 4 HOH A 51 651 1120 HOH HOH . 
G 4 HOH A 52 652 1119 HOH HOH . 
G 4 HOH A 53 653 1059 HOH HOH . 
G 4 HOH A 54 654 1052 HOH HOH . 
G 4 HOH A 55 655 1170 HOH HOH . 
G 4 HOH A 56 656 1011 HOH HOH . 
G 4 HOH A 57 657 1018 HOH HOH . 
G 4 HOH A 58 658 1167 HOH HOH . 
G 4 HOH A 59 659 1009 HOH HOH . 
G 4 HOH A 60 660 1041 HOH HOH . 
G 4 HOH A 61 661 1235 HOH HOH . 
G 4 HOH A 62 662 1008 HOH HOH . 
G 4 HOH A 63 663 1048 HOH HOH . 
G 4 HOH A 64 664 1234 HOH HOH . 
G 4 HOH A 65 665 1230 HOH HOH . 
G 4 HOH A 66 666 1187 HOH HOH . 
G 4 HOH A 67 667 1136 HOH HOH . 
G 4 HOH A 68 668 1027 HOH HOH . 
G 4 HOH A 69 669 1209 HOH HOH . 
G 4 HOH A 70 670 1058 HOH HOH . 
G 4 HOH A 71 671 1138 HOH HOH . 
G 4 HOH A 72 672 1067 HOH HOH . 
G 4 HOH A 73 673 1236 HOH HOH . 
G 4 HOH A 74 674 1134 HOH HOH . 
G 4 HOH A 75 675 1199 HOH HOH . 
G 4 HOH A 76 676 1204 HOH HOH . 
G 4 HOH A 77 677 1195 HOH HOH . 
G 4 HOH A 78 678 1192 HOH HOH . 
G 4 HOH A 79 679 1032 HOH HOH . 
G 4 HOH A 80 680 1231 HOH HOH . 
G 4 HOH A 81 681 1193 HOH HOH . 
G 4 HOH A 82 682 1123 HOH HOH . 
G 4 HOH A 83 683 1034 HOH HOH . 
G 4 HOH A 84 684 1196 HOH HOH . 
G 4 HOH A 85 685 1161 HOH HOH . 
G 4 HOH A 86 686 1042 HOH HOH . 
G 4 HOH A 87 687 1050 HOH HOH . 
G 4 HOH A 88 688 1133 HOH HOH . 
G 4 HOH A 89 689 1036 HOH HOH . 
G 4 HOH A 90 690 1118 HOH HOH . 
G 4 HOH A 91 691 1200 HOH HOH . 
G 4 HOH A 92 692 1160 HOH HOH . 
G 4 HOH A 93 693 1143 HOH HOH . 
G 4 HOH A 94 694 1139 HOH HOH . 
G 4 HOH A 95 695 1228 HOH HOH . 
G 4 HOH A 96 696 1210 HOH HOH . 
G 4 HOH A 97 697 1169 HOH HOH . 
G 4 HOH A 98 698 1201 HOH HOH . 
G 4 HOH A 99 699 1162 HOH HOH . 
G 4 HOH A 100 700 1227 HOH HOH . 
G 4 HOH A 101 701 1229 HOH HOH . 
G 4 HOH A 102 702 1125 HOH HOH . 
G 4 HOH A 103 703 1126 HOH HOH . 
G 4 HOH A 104 704 1191 HOH HOH . 
G 4 HOH A 105 705 1232 HOH HOH . 
G 4 HOH A 106 706 1188 HOH HOH . 
G 4 HOH A 107 707 1130 HOH HOH . 
G 4 HOH A 108 708 1238 HOH HOH . 
G 4 HOH A 109 709 1131 HOH HOH . 
H 4 HOH B 1 601 1112 HOH HOH . 
H 4 HOH B 2 602 1221 HOH HOH . 
H 4 HOH B 3 603 1116 HOH HOH . 
H 4 HOH B 4 604 1096 HOH HOH . 
H 4 HOH B 5 605 1108 HOH HOH . 
H 4 HOH B 6 606 1183 HOH HOH . 
H 4 HOH B 7 607 1074 HOH HOH . 
H 4 HOH B 8 608 1115 HOH HOH . 
H 4 HOH B 9 609 1097 HOH HOH . 
H 4 HOH B 10 610 1243 HOH HOH . 
H 4 HOH B 11 611 1076 HOH HOH . 
H 4 HOH B 12 612 1019 HOH HOH . 
H 4 HOH B 13 613 1014 HOH HOH . 
H 4 HOH B 14 614 1091 HOH HOH . 
H 4 HOH B 15 615 1015 HOH HOH . 
H 4 HOH B 16 616 1194 HOH HOH . 
H 4 HOH B 17 617 1078 HOH HOH . 
H 4 HOH B 18 618 1072 HOH HOH . 
H 4 HOH B 19 619 1013 HOH HOH . 
H 4 HOH B 20 620 1077 HOH HOH . 
H 4 HOH B 21 621 1113 HOH HOH . 
H 4 HOH B 22 622 1082 HOH HOH . 
H 4 HOH B 23 623 1070 HOH HOH . 
H 4 HOH B 24 624 1114 HOH HOH . 
H 4 HOH B 25 625 1184 HOH HOH . 
H 4 HOH B 26 626 1178 HOH HOH . 
H 4 HOH B 27 627 1182 HOH HOH . 
H 4 HOH B 28 628 1098 HOH HOH . 
H 4 HOH B 29 629 1088 HOH HOH . 
H 4 HOH B 30 630 1016 HOH HOH . 
H 4 HOH B 31 631 1109 HOH HOH . 
H 4 HOH B 32 632 1017 HOH HOH . 
H 4 HOH B 33 633 1197 HOH HOH . 
H 4 HOH B 34 634 1100 HOH HOH . 
H 4 HOH B 35 635 1095 HOH HOH . 
H 4 HOH B 36 636 1103 HOH HOH . 
H 4 HOH B 37 637 1215 HOH HOH . 
H 4 HOH B 38 638 1087 HOH HOH . 
H 4 HOH B 39 639 1020 HOH HOH . 
H 4 HOH B 40 640 1185 HOH HOH . 
H 4 HOH B 41 641 1044 HOH HOH . 
H 4 HOH B 42 642 1102 HOH HOH . 
H 4 HOH B 43 643 1071 HOH HOH . 
H 4 HOH B 44 644 1147 HOH HOH . 
H 4 HOH B 45 645 1164 HOH HOH . 
H 4 HOH B 46 646 1099 HOH HOH . 
H 4 HOH B 47 647 1083 HOH HOH . 
H 4 HOH B 48 648 1092 HOH HOH . 
H 4 HOH B 49 649 1148 HOH HOH . 
H 4 HOH B 50 650 1106 HOH HOH . 
H 4 HOH B 51 651 1093 HOH HOH . 
H 4 HOH B 52 652 1150 HOH HOH . 
H 4 HOH B 53 653 1069 HOH HOH . 
H 4 HOH B 54 654 1179 HOH HOH . 
H 4 HOH B 55 655 1222 HOH HOH . 
H 4 HOH B 56 656 1075 HOH HOH . 
H 4 HOH B 57 657 1081 HOH HOH . 
H 4 HOH B 58 658 1219 HOH HOH . 
H 4 HOH B 59 659 1211 HOH HOH . 
H 4 HOH B 60 660 1212 HOH HOH . 
H 4 HOH B 61 661 1220 HOH HOH . 
H 4 HOH B 62 662 1176 HOH HOH . 
H 4 HOH B 63 663 1094 HOH HOH . 
H 4 HOH B 64 664 1244 HOH HOH . 
H 4 HOH B 65 665 1080 HOH HOH . 
H 4 HOH B 66 666 1079 HOH HOH . 
H 4 HOH B 67 667 1180 HOH HOH . 
H 4 HOH B 68 668 1233 HOH HOH . 
H 4 HOH B 69 669 1216 HOH HOH . 
H 4 HOH B 70 670 1177 HOH HOH . 
H 4 HOH B 71 671 1105 HOH HOH . 
H 4 HOH B 72 672 1213 HOH HOH . 
H 4 HOH B 73 673 1181 HOH HOH . 
H 4 HOH B 74 674 1107 HOH HOH . 
H 4 HOH B 75 675 1073 HOH HOH . 
H 4 HOH B 76 676 1149 HOH HOH . 
H 4 HOH B 77 677 1217 HOH HOH . 
H 4 HOH B 78 678 1163 HOH HOH . 
H 4 HOH B 79 679 1224 HOH HOH . 
H 4 HOH B 80 680 1239 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 AKG . . . F 3 -32.472 -0.731 2.853 1 62.33 ? C1 AKG 502 B 1 
HETATM 2 O O1 AKG . . . F 3 -33.304 -1.013 1.954 1 60.88 ? O1 AKG 502 B 1 
HETATM 3 O O2 AKG . . . F 3 -32.712 0.177 3.693 1 62.75 ? O2 AKG 502 B 1 
HETATM 4 C C2 AKG . . . F 3 -31.163 -1.501 2.917 1 63.59 ? C2 AKG 502 B 1 
HETATM 5 O O5 AKG . . . F 3 -30.328 -1.264 3.722 1 66.8 ? O5 AKG 502 B 1 
HETATM 6 C C3 AKG . . . F 3 -31.053 -2.579 1.839 1 61.81 ? C3 AKG 502 B 1 
HETATM 7 C C4 AKG . . . F 3 -29.753 -3.364 1.958 1 60.67 ? C4 AKG 502 B 1 
HETATM 8 C C5 AKG . . . F 3 -29.513 -4.198 0.698 1 60.02 ? C5 AKG 502 B 1 
HETATM 9 O O3 AKG . . . F 3 -30.523 -4.459 -0.012 1 59.65 ? O3 AKG 502 B 1 
HETATM 10 O O4 AKG . . . F 3 -28.327 -4.559 0.448 1 60.47 ? O4 AKG 502 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           10 
#