data_6F4V # _model_server_result.job_id QiuFPYlxtGhTyc_cYK47tQ _model_server_result.datetime_utc '2024-11-23 00:09:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6f4v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 6F4V # _exptl.entry_id 6F4V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6F4V _cell.length_a 113.77 _cell.length_b 113.77 _cell.length_c 76.561 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6F4V _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 Z9K _pdbx_entity_branch_link.comp_id_2 Z9L _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C Z9L 1 B 1 Z9L F 1 H45 3 n C Z9K 2 B 2 Z9K F 1 H45 # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O4 Z9L . B Z9L 1 1_555 C C1 Z9K . B Z9K 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 sing metalc ? metalc1 A O TYR 224 A TYR 270 1_555 J NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc2 A O GLY 226 A GLY 272 1_555 J NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc3 J NA NA . A NA 408 1_555 L O HOH . A HOH 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc4 J NA NA . A NA 408 1_555 L O HOH . A HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc5 J NA NA . A NA 408 1_555 L O HOH . A HOH 642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6F4V _atom_sites.fract_transf_matrix[1][1] 0.00879 _atom_sites.fract_transf_matrix[1][2] 0.005075 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010149 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013062 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 EDO A 1 401 1 EDO EDO . E 4 EDO A 1 402 2 EDO EDO . F 4 EDO A 1 403 3 EDO EDO . G 4 EDO A 1 404 4 EDO EDO . H 5 GOL A 1 405 1 GOL GOL . I 6 CL A 1 407 2 CL CL . J 7 NA A 1 408 1 NA NA . K 6 CL G 1 501 1 CL CL . L 8 HOH A 1 501 54 HOH HOH . L 8 HOH A 2 502 247 HOH HOH . L 8 HOH A 3 503 46 HOH HOH . L 8 HOH A 4 504 184 HOH HOH . L 8 HOH A 5 505 168 HOH HOH . L 8 HOH A 6 506 44 HOH HOH . L 8 HOH A 7 507 246 HOH HOH . L 8 HOH A 8 508 87 HOH HOH . L 8 HOH A 9 509 176 HOH HOH . L 8 HOH A 10 510 80 HOH HOH . L 8 HOH A 11 511 4 HOH HOH . L 8 HOH A 12 512 121 HOH HOH . L 8 HOH A 13 513 188 HOH HOH . L 8 HOH A 14 514 96 HOH HOH . L 8 HOH A 15 515 51 HOH HOH . L 8 HOH A 16 516 225 HOH HOH . L 8 HOH A 17 517 55 HOH HOH . L 8 HOH A 18 518 258 HOH HOH . L 8 HOH A 19 519 31 HOH HOH . L 8 HOH A 20 520 142 HOH HOH . L 8 HOH A 21 521 252 HOH HOH . L 8 HOH A 22 522 165 HOH HOH . L 8 HOH A 23 523 222 HOH HOH . L 8 HOH A 24 524 43 HOH HOH . L 8 HOH A 25 525 3 HOH HOH . L 8 HOH A 26 526 197 HOH HOH . L 8 HOH A 27 527 22 HOH HOH . L 8 HOH A 28 528 132 HOH HOH . L 8 HOH A 29 529 187 HOH HOH . L 8 HOH A 30 530 138 HOH HOH . L 8 HOH A 31 531 162 HOH HOH . L 8 HOH A 32 532 37 HOH HOH . L 8 HOH A 33 533 18 HOH HOH . L 8 HOH A 34 534 70 HOH HOH . L 8 HOH A 35 535 125 HOH HOH . L 8 HOH A 36 536 215 HOH HOH . L 8 HOH A 37 537 169 HOH HOH . L 8 HOH A 38 538 170 HOH HOH . L 8 HOH A 39 539 48 HOH HOH . L 8 HOH A 40 540 97 HOH HOH . L 8 HOH A 41 541 136 HOH HOH . L 8 HOH A 42 542 181 HOH HOH . L 8 HOH A 43 543 133 HOH HOH . L 8 HOH A 44 544 7 HOH HOH . L 8 HOH A 45 545 118 HOH HOH . L 8 HOH A 46 546 230 HOH HOH . L 8 HOH A 47 547 49 HOH HOH . L 8 HOH A 48 548 98 HOH HOH . L 8 HOH A 49 549 86 HOH HOH . L 8 HOH A 50 550 52 HOH HOH . L 8 HOH A 51 551 16 HOH HOH . L 8 HOH A 52 552 69 HOH HOH . L 8 HOH A 53 553 144 HOH HOH . L 8 HOH A 54 554 20 HOH HOH . L 8 HOH A 55 555 84 HOH HOH . L 8 HOH A 56 556 113 HOH HOH . L 8 HOH A 57 557 8 HOH HOH . L 8 HOH A 58 558 107 HOH HOH . L 8 HOH A 59 559 38 HOH HOH . L 8 HOH A 60 560 145 HOH HOH . L 8 HOH A 61 561 123 HOH HOH . L 8 HOH A 62 562 15 HOH HOH . L 8 HOH A 63 563 208 HOH HOH . L 8 HOH A 64 564 92 HOH HOH . L 8 HOH A 65 565 30 HOH HOH . L 8 HOH A 66 566 9 HOH HOH . L 8 HOH A 67 567 103 HOH HOH . L 8 HOH A 68 568 35 HOH HOH . L 8 HOH A 69 569 160 HOH HOH . L 8 HOH A 70 570 206 HOH HOH . L 8 HOH A 71 571 2 HOH HOH . L 8 HOH A 72 572 114 HOH HOH . L 8 HOH A 73 573 42 HOH HOH . L 8 HOH A 74 574 99 HOH HOH . L 8 HOH A 75 575 140 HOH HOH . L 8 HOH A 76 576 233 HOH HOH . L 8 HOH A 77 577 83 HOH HOH . L 8 HOH A 78 578 209 HOH HOH . L 8 HOH A 79 579 111 HOH HOH . L 8 HOH A 80 580 115 HOH HOH . L 8 HOH A 81 581 39 HOH HOH . L 8 HOH A 82 582 166 HOH HOH . L 8 HOH A 83 583 261 HOH HOH . L 8 HOH A 84 584 32 HOH HOH . L 8 HOH A 85 585 120 HOH HOH . L 8 HOH A 86 586 245 HOH HOH . L 8 HOH A 87 587 179 HOH HOH . L 8 HOH A 88 588 218 HOH HOH . L 8 HOH A 89 589 135 HOH HOH . L 8 HOH A 90 590 195 HOH HOH . L 8 HOH A 91 591 122 HOH HOH . L 8 HOH A 92 592 251 HOH HOH . L 8 HOH A 93 593 89 HOH HOH . L 8 HOH A 94 594 40 HOH HOH . L 8 HOH A 95 595 100 HOH HOH . L 8 HOH A 96 596 158 HOH HOH . L 8 HOH A 97 597 1 HOH HOH . L 8 HOH A 98 598 141 HOH HOH . L 8 HOH A 99 599 194 HOH HOH . L 8 HOH A 100 600 58 HOH HOH . L 8 HOH A 101 601 104 HOH HOH . L 8 HOH A 102 602 134 HOH HOH . L 8 HOH A 103 603 6 HOH HOH . L 8 HOH A 104 604 130 HOH HOH . L 8 HOH A 105 605 259 HOH HOH . L 8 HOH A 106 606 151 HOH HOH . L 8 HOH A 107 607 124 HOH HOH . L 8 HOH A 108 608 117 HOH HOH . L 8 HOH A 109 609 28 HOH HOH . L 8 HOH A 110 610 24 HOH HOH . L 8 HOH A 111 611 73 HOH HOH . L 8 HOH A 112 612 143 HOH HOH . L 8 HOH A 113 613 119 HOH HOH . L 8 HOH A 114 614 5 HOH HOH . L 8 HOH A 115 615 19 HOH HOH . L 8 HOH A 116 616 172 HOH HOH . L 8 HOH A 117 617 82 HOH HOH . L 8 HOH A 118 618 41 HOH HOH . L 8 HOH A 119 619 174 HOH HOH . L 8 HOH A 120 620 101 HOH HOH . L 8 HOH A 121 621 171 HOH HOH . L 8 HOH A 122 622 65 HOH HOH . L 8 HOH A 123 623 254 HOH HOH . L 8 HOH A 124 624 64 HOH HOH . L 8 HOH A 125 625 178 HOH HOH . L 8 HOH A 126 626 29 HOH HOH . L 8 HOH A 127 627 116 HOH HOH . L 8 HOH A 128 628 45 HOH HOH . L 8 HOH A 129 629 90 HOH HOH . L 8 HOH A 130 630 91 HOH HOH . L 8 HOH A 131 631 36 HOH HOH . L 8 HOH A 132 632 14 HOH HOH . L 8 HOH A 133 633 78 HOH HOH . L 8 HOH A 134 634 12 HOH HOH . L 8 HOH A 135 635 60 HOH HOH . L 8 HOH A 136 636 231 HOH HOH . L 8 HOH A 137 637 59 HOH HOH . L 8 HOH A 138 638 156 HOH HOH . L 8 HOH A 139 639 21 HOH HOH . L 8 HOH A 140 640 131 HOH HOH . L 8 HOH A 141 641 202 HOH HOH . L 8 HOH A 142 642 163 HOH HOH . L 8 HOH A 143 643 95 HOH HOH . L 8 HOH A 144 644 88 HOH HOH . L 8 HOH A 145 645 71 HOH HOH . L 8 HOH A 146 646 110 HOH HOH . L 8 HOH A 147 647 17 HOH HOH . L 8 HOH A 148 648 76 HOH HOH . L 8 HOH A 149 649 244 HOH HOH . L 8 HOH A 150 650 81 HOH HOH . L 8 HOH A 151 651 232 HOH HOH . L 8 HOH A 152 652 72 HOH HOH . L 8 HOH A 153 653 25 HOH HOH . L 8 HOH A 154 654 61 HOH HOH . L 8 HOH A 155 655 137 HOH HOH . L 8 HOH A 156 656 109 HOH HOH . L 8 HOH A 157 657 108 HOH HOH . L 8 HOH A 158 658 159 HOH HOH . L 8 HOH A 159 659 157 HOH HOH . L 8 HOH A 160 660 33 HOH HOH . L 8 HOH A 161 661 212 HOH HOH . L 8 HOH A 162 662 139 HOH HOH . L 8 HOH A 163 663 63 HOH HOH . L 8 HOH A 164 664 85 HOH HOH . L 8 HOH A 165 665 127 HOH HOH . L 8 HOH A 166 666 203 HOH HOH . L 8 HOH A 167 667 57 HOH HOH . L 8 HOH A 168 668 77 HOH HOH . L 8 HOH A 169 669 74 HOH HOH . L 8 HOH A 170 670 237 HOH HOH . L 8 HOH A 171 671 173 HOH HOH . L 8 HOH A 172 672 79 HOH HOH . L 8 HOH A 173 673 216 HOH HOH . L 8 HOH A 174 674 243 HOH HOH . L 8 HOH A 175 675 94 HOH HOH . L 8 HOH A 176 676 67 HOH HOH . L 8 HOH A 177 677 23 HOH HOH . L 8 HOH A 178 678 75 HOH HOH . L 8 HOH A 179 679 93 HOH HOH . L 8 HOH A 180 680 62 HOH HOH . L 8 HOH A 181 681 249 HOH HOH . L 8 HOH A 182 682 167 HOH HOH . L 8 HOH A 183 683 180 HOH HOH . L 8 HOH A 184 684 256 HOH HOH . L 8 HOH A 185 685 257 HOH HOH . L 8 HOH A 186 686 146 HOH HOH . L 8 HOH A 187 687 190 HOH HOH . L 8 HOH A 188 688 186 HOH HOH . L 8 HOH A 189 689 175 HOH HOH . L 8 HOH A 190 690 221 HOH HOH . L 8 HOH A 191 691 228 HOH HOH . L 8 HOH A 192 692 47 HOH HOH . L 8 HOH A 193 693 235 HOH HOH . L 8 HOH A 194 694 211 HOH HOH . L 8 HOH A 195 695 189 HOH HOH . L 8 HOH A 196 696 185 HOH HOH . L 8 HOH A 197 697 155 HOH HOH . L 8 HOH A 198 698 149 HOH HOH . L 8 HOH A 199 699 220 HOH HOH . L 8 HOH A 200 700 204 HOH HOH . L 8 HOH A 201 701 152 HOH HOH . L 8 HOH A 202 702 148 HOH HOH . L 8 HOH A 203 703 150 HOH HOH . L 8 HOH A 204 704 196 HOH HOH . L 8 HOH A 205 705 129 HOH HOH . L 8 HOH A 206 706 147 HOH HOH . L 8 HOH A 207 707 255 HOH HOH . L 8 HOH A 208 708 241 HOH HOH . L 8 HOH A 209 709 102 HOH HOH . L 8 HOH A 210 710 239 HOH HOH . M 8 HOH G 1 601 210 HOH HOH . M 8 HOH G 2 602 177 HOH HOH . M 8 HOH G 3 603 191 HOH HOH . M 8 HOH G 4 604 13 HOH HOH . M 8 HOH G 5 605 153 HOH HOH . M 8 HOH G 6 606 106 HOH HOH . M 8 HOH G 7 607 27 HOH HOH . M 8 HOH G 8 608 26 HOH HOH . M 8 HOH G 9 609 11 HOH HOH . M 8 HOH G 10 610 10 HOH HOH . M 8 HOH G 11 611 182 HOH HOH . M 8 HOH G 12 612 253 HOH HOH . M 8 HOH G 13 613 53 HOH HOH . M 8 HOH G 14 614 161 HOH HOH . M 8 HOH G 15 615 66 HOH HOH . M 8 HOH G 16 616 105 HOH HOH . M 8 HOH G 17 617 112 HOH HOH . M 8 HOH G 18 618 68 HOH HOH . M 8 HOH G 19 619 34 HOH HOH . M 8 HOH G 20 620 234 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 60.04 -2.179 0.502 1 51.34 ? C1 EDO 401 A 1 HETATM 2 O O1 EDO . . . D 4 58.805 -2.912 0.374 1 47.02 ? O1 EDO 401 A 1 HETATM 3 C C2 EDO . . . D 4 60.596 -2.27 1.921 1 51.85 ? C2 EDO 401 A 1 HETATM 4 O O2 EDO . . . D 4 60.869 -3.638 2.284 1 51.27 ? O2 EDO 401 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #