data_6F4V
#
_model_server_result.job_id            6Jp0Eci7GyuXuhck2wCyNg 
_model_server_result.datetime_utc      '2024-11-23 00:34:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6f4v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":408}' 
#
_entry.id    6F4V 
#
_exptl.entry_id    6F4V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6F4V 
_cell.length_a            113.77 
_cell.length_b            113.77 
_cell.length_c            76.561 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6F4V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    3 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   3 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   Z9K 
_pdbx_entity_branch_link.comp_id_2                   Z9L 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
3 n C Z9L 1 B 1 Z9L F 1 H45 
3 n C Z9K 2 B 2 Z9K F 1 H45 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C O4 Z9L . B Z9L 1 1_555 C C1 Z9K . B Z9K 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 sing 
metalc ? metalc1 A O TYR 224 A TYR 270 1_555 J NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc2 A O GLY 226 A GLY 272 1_555 J NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? 
metalc ? metalc3 J NA NA . A NA 408 1_555 L O HOH . A HOH 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc4 J NA NA . A NA 408 1_555 L O HOH . A HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc5 J NA NA . A NA 408 1_555 L O HOH . A HOH 642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6F4V 
_atom_sites.fract_transf_matrix[1][1]    0.00879 
_atom_sites.fract_transf_matrix[1][2]    0.005075 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010149 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013062 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 EDO A 1 401 1 EDO EDO . 
E 4 EDO A 1 402 2 EDO EDO . 
F 4 EDO A 1 403 3 EDO EDO . 
G 4 EDO A 1 404 4 EDO EDO . 
H 5 GOL A 1 405 1 GOL GOL . 
I 6 CL A 1 407 2 CL CL . 
J 7 NA A 1 408 1 NA NA . 
K 6 CL G 1 501 1 CL CL . 
L 8 HOH A 1 501 54 HOH HOH . 
L 8 HOH A 2 502 247 HOH HOH . 
L 8 HOH A 3 503 46 HOH HOH . 
L 8 HOH A 4 504 184 HOH HOH . 
L 8 HOH A 5 505 168 HOH HOH . 
L 8 HOH A 6 506 44 HOH HOH . 
L 8 HOH A 7 507 246 HOH HOH . 
L 8 HOH A 8 508 87 HOH HOH . 
L 8 HOH A 9 509 176 HOH HOH . 
L 8 HOH A 10 510 80 HOH HOH . 
L 8 HOH A 11 511 4 HOH HOH . 
L 8 HOH A 12 512 121 HOH HOH . 
L 8 HOH A 13 513 188 HOH HOH . 
L 8 HOH A 14 514 96 HOH HOH . 
L 8 HOH A 15 515 51 HOH HOH . 
L 8 HOH A 16 516 225 HOH HOH . 
L 8 HOH A 17 517 55 HOH HOH . 
L 8 HOH A 18 518 258 HOH HOH . 
L 8 HOH A 19 519 31 HOH HOH . 
L 8 HOH A 20 520 142 HOH HOH . 
L 8 HOH A 21 521 252 HOH HOH . 
L 8 HOH A 22 522 165 HOH HOH . 
L 8 HOH A 23 523 222 HOH HOH . 
L 8 HOH A 24 524 43 HOH HOH . 
L 8 HOH A 25 525 3 HOH HOH . 
L 8 HOH A 26 526 197 HOH HOH . 
L 8 HOH A 27 527 22 HOH HOH . 
L 8 HOH A 28 528 132 HOH HOH . 
L 8 HOH A 29 529 187 HOH HOH . 
L 8 HOH A 30 530 138 HOH HOH . 
L 8 HOH A 31 531 162 HOH HOH . 
L 8 HOH A 32 532 37 HOH HOH . 
L 8 HOH A 33 533 18 HOH HOH . 
L 8 HOH A 34 534 70 HOH HOH . 
L 8 HOH A 35 535 125 HOH HOH . 
L 8 HOH A 36 536 215 HOH HOH . 
L 8 HOH A 37 537 169 HOH HOH . 
L 8 HOH A 38 538 170 HOH HOH . 
L 8 HOH A 39 539 48 HOH HOH . 
L 8 HOH A 40 540 97 HOH HOH . 
L 8 HOH A 41 541 136 HOH HOH . 
L 8 HOH A 42 542 181 HOH HOH . 
L 8 HOH A 43 543 133 HOH HOH . 
L 8 HOH A 44 544 7 HOH HOH . 
L 8 HOH A 45 545 118 HOH HOH . 
L 8 HOH A 46 546 230 HOH HOH . 
L 8 HOH A 47 547 49 HOH HOH . 
L 8 HOH A 48 548 98 HOH HOH . 
L 8 HOH A 49 549 86 HOH HOH . 
L 8 HOH A 50 550 52 HOH HOH . 
L 8 HOH A 51 551 16 HOH HOH . 
L 8 HOH A 52 552 69 HOH HOH . 
L 8 HOH A 53 553 144 HOH HOH . 
L 8 HOH A 54 554 20 HOH HOH . 
L 8 HOH A 55 555 84 HOH HOH . 
L 8 HOH A 56 556 113 HOH HOH . 
L 8 HOH A 57 557 8 HOH HOH . 
L 8 HOH A 58 558 107 HOH HOH . 
L 8 HOH A 59 559 38 HOH HOH . 
L 8 HOH A 60 560 145 HOH HOH . 
L 8 HOH A 61 561 123 HOH HOH . 
L 8 HOH A 62 562 15 HOH HOH . 
L 8 HOH A 63 563 208 HOH HOH . 
L 8 HOH A 64 564 92 HOH HOH . 
L 8 HOH A 65 565 30 HOH HOH . 
L 8 HOH A 66 566 9 HOH HOH . 
L 8 HOH A 67 567 103 HOH HOH . 
L 8 HOH A 68 568 35 HOH HOH . 
L 8 HOH A 69 569 160 HOH HOH . 
L 8 HOH A 70 570 206 HOH HOH . 
L 8 HOH A 71 571 2 HOH HOH . 
L 8 HOH A 72 572 114 HOH HOH . 
L 8 HOH A 73 573 42 HOH HOH . 
L 8 HOH A 74 574 99 HOH HOH . 
L 8 HOH A 75 575 140 HOH HOH . 
L 8 HOH A 76 576 233 HOH HOH . 
L 8 HOH A 77 577 83 HOH HOH . 
L 8 HOH A 78 578 209 HOH HOH . 
L 8 HOH A 79 579 111 HOH HOH . 
L 8 HOH A 80 580 115 HOH HOH . 
L 8 HOH A 81 581 39 HOH HOH . 
L 8 HOH A 82 582 166 HOH HOH . 
L 8 HOH A 83 583 261 HOH HOH . 
L 8 HOH A 84 584 32 HOH HOH . 
L 8 HOH A 85 585 120 HOH HOH . 
L 8 HOH A 86 586 245 HOH HOH . 
L 8 HOH A 87 587 179 HOH HOH . 
L 8 HOH A 88 588 218 HOH HOH . 
L 8 HOH A 89 589 135 HOH HOH . 
L 8 HOH A 90 590 195 HOH HOH . 
L 8 HOH A 91 591 122 HOH HOH . 
L 8 HOH A 92 592 251 HOH HOH . 
L 8 HOH A 93 593 89 HOH HOH . 
L 8 HOH A 94 594 40 HOH HOH . 
L 8 HOH A 95 595 100 HOH HOH . 
L 8 HOH A 96 596 158 HOH HOH . 
L 8 HOH A 97 597 1 HOH HOH . 
L 8 HOH A 98 598 141 HOH HOH . 
L 8 HOH A 99 599 194 HOH HOH . 
L 8 HOH A 100 600 58 HOH HOH . 
L 8 HOH A 101 601 104 HOH HOH . 
L 8 HOH A 102 602 134 HOH HOH . 
L 8 HOH A 103 603 6 HOH HOH . 
L 8 HOH A 104 604 130 HOH HOH . 
L 8 HOH A 105 605 259 HOH HOH . 
L 8 HOH A 106 606 151 HOH HOH . 
L 8 HOH A 107 607 124 HOH HOH . 
L 8 HOH A 108 608 117 HOH HOH . 
L 8 HOH A 109 609 28 HOH HOH . 
L 8 HOH A 110 610 24 HOH HOH . 
L 8 HOH A 111 611 73 HOH HOH . 
L 8 HOH A 112 612 143 HOH HOH . 
L 8 HOH A 113 613 119 HOH HOH . 
L 8 HOH A 114 614 5 HOH HOH . 
L 8 HOH A 115 615 19 HOH HOH . 
L 8 HOH A 116 616 172 HOH HOH . 
L 8 HOH A 117 617 82 HOH HOH . 
L 8 HOH A 118 618 41 HOH HOH . 
L 8 HOH A 119 619 174 HOH HOH . 
L 8 HOH A 120 620 101 HOH HOH . 
L 8 HOH A 121 621 171 HOH HOH . 
L 8 HOH A 122 622 65 HOH HOH . 
L 8 HOH A 123 623 254 HOH HOH . 
L 8 HOH A 124 624 64 HOH HOH . 
L 8 HOH A 125 625 178 HOH HOH . 
L 8 HOH A 126 626 29 HOH HOH . 
L 8 HOH A 127 627 116 HOH HOH . 
L 8 HOH A 128 628 45 HOH HOH . 
L 8 HOH A 129 629 90 HOH HOH . 
L 8 HOH A 130 630 91 HOH HOH . 
L 8 HOH A 131 631 36 HOH HOH . 
L 8 HOH A 132 632 14 HOH HOH . 
L 8 HOH A 133 633 78 HOH HOH . 
L 8 HOH A 134 634 12 HOH HOH . 
L 8 HOH A 135 635 60 HOH HOH . 
L 8 HOH A 136 636 231 HOH HOH . 
L 8 HOH A 137 637 59 HOH HOH . 
L 8 HOH A 138 638 156 HOH HOH . 
L 8 HOH A 139 639 21 HOH HOH . 
L 8 HOH A 140 640 131 HOH HOH . 
L 8 HOH A 141 641 202 HOH HOH . 
L 8 HOH A 142 642 163 HOH HOH . 
L 8 HOH A 143 643 95 HOH HOH . 
L 8 HOH A 144 644 88 HOH HOH . 
L 8 HOH A 145 645 71 HOH HOH . 
L 8 HOH A 146 646 110 HOH HOH . 
L 8 HOH A 147 647 17 HOH HOH . 
L 8 HOH A 148 648 76 HOH HOH . 
L 8 HOH A 149 649 244 HOH HOH . 
L 8 HOH A 150 650 81 HOH HOH . 
L 8 HOH A 151 651 232 HOH HOH . 
L 8 HOH A 152 652 72 HOH HOH . 
L 8 HOH A 153 653 25 HOH HOH . 
L 8 HOH A 154 654 61 HOH HOH . 
L 8 HOH A 155 655 137 HOH HOH . 
L 8 HOH A 156 656 109 HOH HOH . 
L 8 HOH A 157 657 108 HOH HOH . 
L 8 HOH A 158 658 159 HOH HOH . 
L 8 HOH A 159 659 157 HOH HOH . 
L 8 HOH A 160 660 33 HOH HOH . 
L 8 HOH A 161 661 212 HOH HOH . 
L 8 HOH A 162 662 139 HOH HOH . 
L 8 HOH A 163 663 63 HOH HOH . 
L 8 HOH A 164 664 85 HOH HOH . 
L 8 HOH A 165 665 127 HOH HOH . 
L 8 HOH A 166 666 203 HOH HOH . 
L 8 HOH A 167 667 57 HOH HOH . 
L 8 HOH A 168 668 77 HOH HOH . 
L 8 HOH A 169 669 74 HOH HOH . 
L 8 HOH A 170 670 237 HOH HOH . 
L 8 HOH A 171 671 173 HOH HOH . 
L 8 HOH A 172 672 79 HOH HOH . 
L 8 HOH A 173 673 216 HOH HOH . 
L 8 HOH A 174 674 243 HOH HOH . 
L 8 HOH A 175 675 94 HOH HOH . 
L 8 HOH A 176 676 67 HOH HOH . 
L 8 HOH A 177 677 23 HOH HOH . 
L 8 HOH A 178 678 75 HOH HOH . 
L 8 HOH A 179 679 93 HOH HOH . 
L 8 HOH A 180 680 62 HOH HOH . 
L 8 HOH A 181 681 249 HOH HOH . 
L 8 HOH A 182 682 167 HOH HOH . 
L 8 HOH A 183 683 180 HOH HOH . 
L 8 HOH A 184 684 256 HOH HOH . 
L 8 HOH A 185 685 257 HOH HOH . 
L 8 HOH A 186 686 146 HOH HOH . 
L 8 HOH A 187 687 190 HOH HOH . 
L 8 HOH A 188 688 186 HOH HOH . 
L 8 HOH A 189 689 175 HOH HOH . 
L 8 HOH A 190 690 221 HOH HOH . 
L 8 HOH A 191 691 228 HOH HOH . 
L 8 HOH A 192 692 47 HOH HOH . 
L 8 HOH A 193 693 235 HOH HOH . 
L 8 HOH A 194 694 211 HOH HOH . 
L 8 HOH A 195 695 189 HOH HOH . 
L 8 HOH A 196 696 185 HOH HOH . 
L 8 HOH A 197 697 155 HOH HOH . 
L 8 HOH A 198 698 149 HOH HOH . 
L 8 HOH A 199 699 220 HOH HOH . 
L 8 HOH A 200 700 204 HOH HOH . 
L 8 HOH A 201 701 152 HOH HOH . 
L 8 HOH A 202 702 148 HOH HOH . 
L 8 HOH A 203 703 150 HOH HOH . 
L 8 HOH A 204 704 196 HOH HOH . 
L 8 HOH A 205 705 129 HOH HOH . 
L 8 HOH A 206 706 147 HOH HOH . 
L 8 HOH A 207 707 255 HOH HOH . 
L 8 HOH A 208 708 241 HOH HOH . 
L 8 HOH A 209 709 102 HOH HOH . 
L 8 HOH A 210 710 239 HOH HOH . 
M 8 HOH G 1 601 210 HOH HOH . 
M 8 HOH G 2 602 177 HOH HOH . 
M 8 HOH G 3 603 191 HOH HOH . 
M 8 HOH G 4 604 13 HOH HOH . 
M 8 HOH G 5 605 153 HOH HOH . 
M 8 HOH G 6 606 106 HOH HOH . 
M 8 HOH G 7 607 27 HOH HOH . 
M 8 HOH G 8 608 26 HOH HOH . 
M 8 HOH G 9 609 11 HOH HOH . 
M 8 HOH G 10 610 10 HOH HOH . 
M 8 HOH G 11 611 182 HOH HOH . 
M 8 HOH G 12 612 253 HOH HOH . 
M 8 HOH G 13 613 53 HOH HOH . 
M 8 HOH G 14 614 161 HOH HOH . 
M 8 HOH G 15 615 66 HOH HOH . 
M 8 HOH G 16 616 105 HOH HOH . 
M 8 HOH G 17 617 112 HOH HOH . 
M 8 HOH G 18 618 68 HOH HOH . 
M 8 HOH G 19 619 34 HOH HOH . 
M 8 HOH G 20 620 234 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         J 
_atom_site.label_entity_id       7 
_atom_site.Cartn_x               55.41 
_atom_site.Cartn_y               21.714 
_atom_site.Cartn_z               11.525 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        34.24 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           408 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           224 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#