data_6F5M
#
_model_server_result.job_id            JhjPO-keHwI1jYqf9oeLhw 
_model_server_result.datetime_utc      '2025-08-31 14:21:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6f5m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":410}' 
#
_entry.id    6F5M 
#
_exptl.entry_id    6F5M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6F5M 
_cell.length_a            204.557 
_cell.length_b            204.557 
_cell.length_c            62.155 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6F5M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G,H,I,J,K,P 1 1 
B,E,F,L,M,N,O,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 M N N 
? 5 N N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
2 oligosaccharide 
3 oligosaccharide 
4 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 2 4 3 MAN BMA C1 O1 . O6 HO6 . sing 
4 ? 2 5 1 FUC NAG C1 O1 . O6 HO6 . sing 
5 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
6 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
7 ? 3 4 1 FUC NAG C1 O1 . O6 HO6 . sing 
8 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
9 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
10 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 
11 ? 4 5 3 MAN BMA C1 O1 . O6 HO6 . sing 
12 ? 4 6 1 FUC NAG C1 O1 . O6 HO6 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n C NAG 1 C 1 NAG A 401 NAG 
2 n C NAG 2 C 2 NAG A 403 NAG 
2 n C BMA 3 C 3 BMA A 404 BMA 
2 n C MAN 4 C 4 MAN A 405 MAN 
2 n C FUC 5 C 5 FUC A 402 FUC 
3 n D NAG 1 D 1 NAG A 406 NAG 
3 n D NAG 2 D 2 NAG A 408 NAG 
3 n D BMA 3 D 3 BMA A 409 BMA 
3 n D FUC 4 D 4 FUC A 407 FUC 
4 n E NAG 1 E 1 NAG B 401 NAG 
4 n E NAG 2 E 2 NAG B 403 NAG 
4 n E BMA 3 E 3 BMA B 404 BMA 
4 n E MAN 4 E 4 MAN B 406 MAN 
4 n E MAN 5 E 5 MAN B 405 MAN 
4 n E FUC 6 E 6 FUC B 402 FUC 
3 n F NAG 1 F 1 NAG B 407 NAG 
3 n F NAG 2 F 2 NAG B 409 NAG 
3 n F BMA 3 F 3 BMA B 410 BMA 
3 n F FUC 4 F 4 FUC B 408 FUC 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 42 1_555 A SG CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 122 A CYS 136 1_555 A SG CYS 179 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 A SG CYS 152 A CYS 168 1_555 A SG CYS 158 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf4 A SG CYS 169 A CYS 191 1_555 A SG CYS 194 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 B SG CYS 26 B CYS 42 1_555 B SG CYS 42 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 B SG CYS 122 B CYS 136 1_555 B SG CYS 179 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 B SG CYS 152 B CYS 168 1_555 B SG CYS 158 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf8 B SG CYS 169 B CYS 191 1_555 B SG CYS 194 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A ND2 ASN 95 A ASN 109 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale2 A ND2 ASN 144 A ASN 159 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale3 B ND2 ASN 95 B ASN 109 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale4 B ND2 ASN 144 B ASN 159 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale6 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale7 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale8 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale10 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale11 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale12 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale13 E O6 NAG . E NAG 1 1_555 E C1 FUC . E FUC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale14 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
covale ? covale15 E O3 BMA . E BMA 3 1_555 E C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? 
covale ? covale16 E O6 BMA . E BMA 3 1_555 E C1 MAN . E MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale17 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale18 F O6 NAG . F NAG 1 1_555 F C1 FUC . F FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale19 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 438 n n 
S O2 SO4 doub 439 n n 
S O3 SO4 sing 440 n n 
S O4 SO4 sing 441 n n 
#
_atom_sites.entry_id                     6F5M 
_atom_sites.fract_transf_matrix[1][1]    0.004889 
_atom_sites.fract_transf_matrix[1][2]    0.002822 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005645 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016089 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 5 SO4 A 1 410 410 SO4 SO4 . 
H 5 SO4 A 1 411 411 SO4 SO4 . 
I 6 ACT A 1 412 412 ACT ACT . 
J 6 ACT A 1 413 413 ACT ACT . 
K 7 CQH A 1 414 414 CQH CQH . 
L 7 CQH B 1 301 415 CQH CQH . 
M 5 SO4 B 1 312 411 SO4 SO4 . 
N 5 SO4 B 1 313 412 SO4 SO4 . 
O 6 ACT B 1 314 413 ACT ACT . 
P 8 HOH A 1 501 501 HOH HOH . 
P 8 HOH A 2 502 502 HOH HOH . 
P 8 HOH A 3 503 503 HOH HOH . 
P 8 HOH A 4 504 504 HOH HOH . 
P 8 HOH A 5 505 505 HOH HOH . 
P 8 HOH A 6 506 506 HOH HOH . 
P 8 HOH A 7 507 510 HOH HOH . 
P 8 HOH A 8 508 511 HOH HOH . 
P 8 HOH A 9 509 507 HOH HOH . 
P 8 HOH A 10 510 509 HOH HOH . 
P 8 HOH A 11 511 508 HOH HOH . 
P 8 HOH A 12 512 513 HOH HOH . 
P 8 HOH A 13 513 512 HOH HOH . 
P 8 HOH A 14 514 516 HOH HOH . 
P 8 HOH A 15 515 514 HOH HOH . 
P 8 HOH A 16 516 517 HOH HOH . 
P 8 HOH A 17 517 515 HOH HOH . 
P 8 HOH A 18 518 518 HOH HOH . 
P 8 HOH A 19 519 519 HOH HOH . 
P 8 HOH A 20 520 520 HOH HOH . 
P 8 HOH A 21 521 521 HOH HOH . 
Q 8 HOH B 1 501 501 HOH HOH . 
Q 8 HOH B 2 502 502 HOH HOH . 
Q 8 HOH B 3 503 505 HOH HOH . 
Q 8 HOH B 4 504 504 HOH HOH . 
Q 8 HOH B 5 505 507 HOH HOH . 
Q 8 HOH B 6 506 506 HOH HOH . 
Q 8 HOH B 7 507 503 HOH HOH . 
Q 8 HOH B 8 508 509 HOH HOH . 
Q 8 HOH B 9 509 511 HOH HOH . 
Q 8 HOH B 10 510 510 HOH HOH . 
Q 8 HOH B 11 511 508 HOH HOH . 
Q 8 HOH B 12 512 512 HOH HOH . 
Q 8 HOH B 13 513 513 HOH HOH . 
Q 8 HOH B 14 514 514 HOH HOH . 
Q 8 HOH B 15 515 515 HOH HOH . 
Q 8 HOH B 16 516 516 HOH HOH . 
Q 8 HOH B 17 517 517 HOH HOH . 
Q 8 HOH B 18 518 518 HOH HOH . 
Q 8 HOH B 19 519 519 HOH HOH . 
Q 8 HOH B 20 520 520 HOH HOH . 
Q 8 HOH B 21 521 522 HOH HOH . 
Q 8 HOH B 22 522 521 HOH HOH . 
Q 8 HOH B 23 523 522 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . G 5 53.56 12.369 35.421 1 129.98 ? S SO4 410 A 1 
HETATM 2 O O1 SO4 . . . G 5 54.661 13.288 35.145 1 126.67 ? O1 SO4 410 A 1 
HETATM 3 O O2 SO4 . . . G 5 53.161 11.697 34.187 1 128.8 ? O2 SO4 410 A 1 
HETATM 4 O O3 SO4 . . . G 5 53.991 11.375 36.401 1 129.96 ? O3 SO4 410 A 1 
HETATM 5 O O4 SO4 . . . G 5 52.424 13.119 35.951 1 130.31 ? O4 SO4 410 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           353 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           5 
#