data_6F6I
#
_model_server_result.job_id            REk_HnGfE-kd10KuzJnZJA 
_model_server_result.datetime_utc      '2024-11-28 05:20:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6f6i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":705}' 
#
_entry.id    6F6I 
#
_exptl.entry_id    6F6I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6F6I 
_cell.length_a            113.68 
_cell.length_b            113.68 
_cell.length_c            306.26 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6F6I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -56.84 98.449768 0 
3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -113.68 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 I N N 
? 6 J N N 
? 6 K N N 
? 6 M N N 
? 6 N N N 
#
_pdbx_entity_branch.entity_id    3 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 3 4 3 MAN BMA C1 O1 . O6 HO6 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
3 n C NAG 1 C 1 NAG D 621 NAG 
3 n C NAG 2 C 2 NAG D 622 NAG 
3 n C BMA 3 C 3 BMA D 623 BMA 
3 n C MAN 4 C 4 MAN D 624 MAN 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 53 1_555 B SG CYS 108 B CYS 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 A SG CYS 81 A CYS 108 1_555 A SG CYS 108 A CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 A SG CYS 94 A CYS 121 1_555 A SG CYS 120 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 B SG CYS 10 B CYS 511 1_555 B SG CYS 55 B CYS 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf5 B SG CYS 100 B CYS 601 1_555 B SG CYS 107 B CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 A ND2 ASN 201 A ASN 228 1_555 E C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale2 A ND2 ASN 211 A ASN 238 1_555 F C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale3 A ND2 ASN 230 A ASN 257 1_555 D C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale4 A ND2 ASN 241 A ASN 268 1_555 G C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? 
covale ? covale5 B ND2 ASN 62 B ASN 563 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale7 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale8 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 209 n n 
C1 C2 GOL sing 210 n n 
C1 H11 GOL sing 211 n n 
C1 H12 GOL sing 212 n n 
O1 HO1 GOL sing 213 n n 
C2 O2 GOL sing 214 n n 
C2 C3 GOL sing 215 n n 
C2 H2 GOL sing 216 n n 
O2 HO2 GOL sing 217 n n 
C3 O3 GOL sing 218 n n 
C3 H31 GOL sing 219 n n 
C3 H32 GOL sing 220 n n 
O3 HO3 GOL sing 221 n n 
#
_atom_sites.entry_id                     6F6I 
_atom_sites.fract_transf_matrix[1][1]    0.008797 
_atom_sites.fract_transf_matrix[1][2]    0.005079 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010157 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003265 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NAG A 1 501 2 NAG NAG . 
E 4 NAG A 1 502 10 NAG NAG . 
F 4 NAG A 1 503 11 NAG NAG . 
G 4 NAG A 1 504 12 NAG NAG . 
H 5 DMS A 1 505 1 DMS DMS . 
I 6 GOL A 1 506 1 GOL GOL . 
J 6 GOL A 1 507 4 GOL GOL . 
K 6 GOL A 1 508 5 GOL GOL . 
L 7 8PR A 1 509 1 8PR 8PR . 
M 6 GOL B 1 705 2 GOL GOL . 
N 6 GOL B 1 706 3 GOL GOL . 
O 8 HOH A 1 601 138 HOH HOH . 
O 8 HOH A 2 602 26 HOH HOH . 
O 8 HOH A 3 603 145 HOH HOH . 
O 8 HOH A 4 604 135 HOH HOH . 
O 8 HOH A 5 605 153 HOH HOH . 
O 8 HOH A 6 606 23 HOH HOH . 
O 8 HOH A 7 607 204 HOH HOH . 
O 8 HOH A 8 608 170 HOH HOH . 
O 8 HOH A 9 609 201 HOH HOH . 
O 8 HOH A 10 610 147 HOH HOH . 
O 8 HOH A 11 611 180 HOH HOH . 
O 8 HOH A 12 612 159 HOH HOH . 
O 8 HOH A 13 613 148 HOH HOH . 
O 8 HOH A 14 614 85 HOH HOH . 
O 8 HOH A 15 615 13 HOH HOH . 
O 8 HOH A 16 616 45 HOH HOH . 
O 8 HOH A 17 617 6 HOH HOH . 
O 8 HOH A 18 618 2 HOH HOH . 
O 8 HOH A 19 619 142 HOH HOH . 
O 8 HOH A 20 620 198 HOH HOH . 
O 8 HOH A 21 621 42 HOH HOH . 
O 8 HOH A 22 622 10 HOH HOH . 
O 8 HOH A 23 623 166 HOH HOH . 
O 8 HOH A 24 624 144 HOH HOH . 
O 8 HOH A 25 625 1 HOH HOH . 
O 8 HOH A 26 626 179 HOH HOH . 
O 8 HOH A 27 627 141 HOH HOH . 
O 8 HOH A 28 628 146 HOH HOH . 
O 8 HOH A 29 629 214 HOH HOH . 
O 8 HOH A 30 630 152 HOH HOH . 
O 8 HOH A 31 631 163 HOH HOH . 
O 8 HOH A 32 632 178 HOH HOH . 
O 8 HOH A 33 633 190 HOH HOH . 
O 8 HOH A 34 634 186 HOH HOH . 
O 8 HOH A 35 635 71 HOH HOH . 
O 8 HOH A 36 636 27 HOH HOH . 
O 8 HOH A 37 637 177 HOH HOH . 
O 8 HOH A 38 638 165 HOH HOH . 
O 8 HOH A 39 639 12 HOH HOH . 
O 8 HOH A 40 640 203 HOH HOH . 
O 8 HOH A 41 641 213 HOH HOH . 
O 8 HOH A 42 642 30 HOH HOH . 
O 8 HOH A 43 643 168 HOH HOH . 
O 8 HOH A 44 644 93 HOH HOH . 
O 8 HOH A 45 645 205 HOH HOH . 
O 8 HOH A 46 646 131 HOH HOH . 
O 8 HOH A 47 647 188 HOH HOH . 
O 8 HOH A 48 648 136 HOH HOH . 
O 8 HOH A 49 649 193 HOH HOH . 
O 8 HOH A 50 650 82 HOH HOH . 
O 8 HOH A 51 651 11 HOH HOH . 
O 8 HOH A 52 652 199 HOH HOH . 
O 8 HOH A 53 653 86 HOH HOH . 
O 8 HOH A 54 654 211 HOH HOH . 
O 8 HOH A 55 655 192 HOH HOH . 
O 8 HOH A 56 656 132 HOH HOH . 
O 8 HOH A 57 657 51 HOH HOH . 
O 8 HOH A 58 658 206 HOH HOH . 
O 8 HOH A 59 659 92 HOH HOH . 
O 8 HOH A 60 660 140 HOH HOH . 
O 8 HOH A 61 661 133 HOH HOH . 
O 8 HOH A 62 662 76 HOH HOH . 
O 8 HOH A 63 663 137 HOH HOH . 
O 8 HOH A 64 664 143 HOH HOH . 
O 8 HOH A 65 665 83 HOH HOH . 
O 8 HOH A 66 666 164 HOH HOH . 
O 8 HOH A 67 667 161 HOH HOH . 
O 8 HOH A 68 668 154 HOH HOH . 
P 8 HOH B 1 801 212 HOH HOH . 
P 8 HOH B 2 802 160 HOH HOH . 
P 8 HOH B 3 803 210 HOH HOH . 
P 8 HOH B 4 804 169 HOH HOH . 
P 8 HOH B 5 805 207 HOH HOH . 
P 8 HOH B 6 806 8 HOH HOH . 
P 8 HOH B 7 807 191 HOH HOH . 
P 8 HOH B 8 808 173 HOH HOH . 
P 8 HOH B 9 809 167 HOH HOH . 
P 8 HOH B 10 810 176 HOH HOH . 
P 8 HOH B 11 811 195 HOH HOH . 
P 8 HOH B 12 812 158 HOH HOH . 
P 8 HOH B 13 813 171 HOH HOH . 
P 8 HOH B 14 814 197 HOH HOH . 
P 8 HOH B 15 815 3 HOH HOH . 
P 8 HOH B 16 816 184 HOH HOH . 
P 8 HOH B 17 817 22 HOH HOH . 
P 8 HOH B 18 818 175 HOH HOH . 
P 8 HOH B 19 819 16 HOH HOH . 
P 8 HOH B 20 820 200 HOH HOH . 
P 8 HOH B 21 821 130 HOH HOH . 
P 8 HOH B 22 822 156 HOH HOH . 
P 8 HOH B 23 823 34 HOH HOH . 
P 8 HOH B 24 824 182 HOH HOH . 
P 8 HOH B 25 825 196 HOH HOH . 
P 8 HOH B 26 826 129 HOH HOH . 
P 8 HOH B 27 827 187 HOH HOH . 
P 8 HOH B 28 828 32 HOH HOH . 
P 8 HOH B 29 829 183 HOH HOH . 
P 8 HOH B 30 830 215 HOH HOH . 
P 8 HOH B 31 831 185 HOH HOH . 
P 8 HOH B 32 832 208 HOH HOH . 
P 8 HOH B 33 833 194 HOH HOH . 
P 8 HOH B 34 834 29 HOH HOH . 
P 8 HOH B 35 835 209 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . M 6 -66.321 8.063 -12.592 1 88.45 ? C1 GOL 705 B 1 
HETATM 2 O O1 GOL . . . M 6 -65.367 9.076 -12.529 1 78.56 ? O1 GOL 705 B 1 
HETATM 3 C C2 GOL . . . M 6 -65.752 6.958 -13.509 1 92.44 ? C2 GOL 705 B 1 
HETATM 4 O O2 GOL . . . M 6 -64.369 6.89 -13.438 1 89.08 ? O2 GOL 705 B 1 
HETATM 5 C C3 GOL . . . M 6 -66.426 5.658 -13.011 1 99.05 ? C3 GOL 705 B 1 
HETATM 6 O O3 GOL . . . M 6 -66.3 4.723 -14.033 1 86.55 ? O3 GOL 705 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#