data_6F6S
#
_model_server_result.job_id            ezel9FE_uJ6r5YVizTieaQ 
_model_server_result.datetime_utc      '2024-10-14 03:13:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6f6s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":702}' 
#
_entry.id    6F6S 
#
_exptl.entry_id    6F6S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6F6S 
_cell.length_a            114.379 
_cell.length_b            114.379 
_cell.length_c            305.749 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6F6S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -57.1895 99.05512 0 
3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -114.379 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 R N N 
? 4 S N N 
? 4 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 53 1_555 B SG CYS 108 B CYS 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 81 A CYS 108 1_555 A SG CYS 108 A CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf3 A SG CYS 94 A CYS 121 1_555 A SG CYS 120 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 B SG CYS 10 B CYS 511 1_555 B SG CYS 55 B CYS 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 B SG CYS 100 B CYS 601 1_555 B SG CYS 107 B CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A ND2 ASN 201 A ASN 228 1_555 D C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale2 A ND2 ASN 211 A ASN 238 1_555 E C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale3 A ND2 ASN 230 A ASN 257 1_555 C C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale4 A ND2 ASN 241 A ASN 268 1_555 F C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? 
covale ? covale5 B ND2 ASN 62 B ASN 563 1_555 Q C1 NAG . B NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 189 n n 
C1 C2 GOL sing 190 n n 
C1 H11 GOL sing 191 n n 
C1 H12 GOL sing 192 n n 
O1 HO1 GOL sing 193 n n 
C2 O2 GOL sing 194 n n 
C2 C3 GOL sing 195 n n 
C2 H2 GOL sing 196 n n 
O2 HO2 GOL sing 197 n n 
C3 O3 GOL sing 198 n n 
C3 H31 GOL sing 199 n n 
C3 H32 GOL sing 200 n n 
O3 HO3 GOL sing 201 n n 
#
_atom_sites.entry_id                     6F6S 
_atom_sites.fract_transf_matrix[1][1]    0.008743 
_atom_sites.fract_transf_matrix[1][2]    0.005048 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010095 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003271 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG A 1 501 2 NAG NAG . 
D 3 NAG A 1 502 10 NAG NAG . 
E 3 NAG A 1 503 11 NAG NAG . 
F 3 NAG A 1 504 12 NAG NAG . 
G 4 GOL A 1 505 1 GOL GOL . 
H 4 GOL A 1 506 3 GOL GOL . 
I 5 CXQ A 1 507 2 CXQ LIG . 
J 6 DMS A 1 508 1 DMS DMS . 
K 6 DMS A 1 509 2 DMS DMS . 
L 6 DMS A 1 510 4 DMS DMS . 
M 6 DMS A 1 511 5 DMS DMS . 
N 6 DMS A 1 512 10 DMS DMS . 
O 6 DMS A 1 513 11 DMS DMS . 
P 6 DMS A 1 514 13 DMS DMS . 
Q 3 NAG B 1 701 621 NAG NAG . 
R 4 GOL B 1 702 2 GOL GOL . 
S 4 GOL B 1 703 4 GOL GOL . 
T 4 GOL B 1 704 6 GOL GOL . 
U 5 CXQ B 1 705 1 CXQ LIG . 
V 6 DMS B 1 706 3 DMS DMS . 
W 6 DMS B 1 707 7 DMS DMS . 
X 6 DMS B 1 708 8 DMS DMS . 
Y 6 DMS B 1 709 12 DMS DMS . 
Z 6 DMS B 1 710 14 DMS DMS . 
AA 6 DMS B 1 711 15 DMS DMS . 
BA 7 HOH A 1 601 143 HOH HOH . 
BA 7 HOH A 2 602 145 HOH HOH . 
BA 7 HOH A 3 603 138 HOH HOH . 
BA 7 HOH A 4 604 141 HOH HOH . 
BA 7 HOH A 5 605 181 HOH HOH . 
BA 7 HOH A 6 606 45 HOH HOH . 
BA 7 HOH A 7 607 175 HOH HOH . 
BA 7 HOH A 8 608 148 HOH HOH . 
BA 7 HOH A 9 609 71 HOH HOH . 
BA 7 HOH A 10 610 13 HOH HOH . 
BA 7 HOH A 11 611 171 HOH HOH . 
BA 7 HOH A 12 612 170 HOH HOH . 
BA 7 HOH A 13 613 6 HOH HOH . 
BA 7 HOH A 14 614 186 HOH HOH . 
BA 7 HOH A 15 615 27 HOH HOH . 
BA 7 HOH A 16 616 166 HOH HOH . 
BA 7 HOH A 17 617 23 HOH HOH . 
BA 7 HOH A 18 618 2 HOH HOH . 
BA 7 HOH A 19 619 183 HOH HOH . 
BA 7 HOH A 20 620 142 HOH HOH . 
BA 7 HOH A 21 621 146 HOH HOH . 
BA 7 HOH A 22 622 131 HOH HOH . 
BA 7 HOH A 23 623 85 HOH HOH . 
BA 7 HOH A 24 624 76 HOH HOH . 
BA 7 HOH A 25 625 1 HOH HOH . 
BA 7 HOH A 26 626 163 HOH HOH . 
BA 7 HOH A 27 627 198 HOH HOH . 
BA 7 HOH A 28 628 152 HOH HOH . 
BA 7 HOH A 29 629 174 HOH HOH . 
BA 7 HOH A 30 630 30 HOH HOH . 
BA 7 HOH A 31 631 180 HOH HOH . 
BA 7 HOH A 32 632 16 HOH HOH . 
BA 7 HOH A 33 633 204 HOH HOH . 
BA 7 HOH A 34 634 82 HOH HOH . 
BA 7 HOH A 35 635 190 HOH HOH . 
BA 7 HOH A 36 636 102 HOH HOH . 
BA 7 HOH A 37 637 192 HOH HOH . 
BA 7 HOH A 38 638 203 HOH HOH . 
BA 7 HOH A 39 639 133 HOH HOH . 
BA 7 HOH A 40 640 182 HOH HOH . 
BA 7 HOH A 41 641 193 HOH HOH . 
BA 7 HOH A 42 642 191 HOH HOH . 
BA 7 HOH A 43 643 184 HOH HOH . 
BA 7 HOH A 44 644 164 HOH HOH . 
BA 7 HOH A 45 645 189 HOH HOH . 
BA 7 HOH A 46 646 87 HOH HOH . 
CA 7 HOH B 1 801 179 HOH HOH . 
CA 7 HOH B 2 802 185 HOH HOH . 
CA 7 HOH B 3 803 151 HOH HOH . 
CA 7 HOH B 4 804 172 HOH HOH . 
CA 7 HOH B 5 805 196 HOH HOH . 
CA 7 HOH B 6 806 158 HOH HOH . 
CA 7 HOH B 7 807 156 HOH HOH . 
CA 7 HOH B 8 808 128 HOH HOH . 
CA 7 HOH B 9 809 201 HOH HOH . 
CA 7 HOH B 10 810 178 HOH HOH . 
CA 7 HOH B 11 811 194 HOH HOH . 
CA 7 HOH B 12 812 187 HOH HOH . 
CA 7 HOH B 13 813 202 HOH HOH . 
CA 7 HOH B 14 814 199 HOH HOH . 
CA 7 HOH B 15 815 195 HOH HOH . 
CA 7 HOH B 16 816 32 HOH HOH . 
CA 7 HOH B 17 817 157 HOH HOH . 
CA 7 HOH B 18 818 130 HOH HOH . 
CA 7 HOH B 19 819 17 HOH HOH . 
CA 7 HOH B 20 820 34 HOH HOH . 
CA 7 HOH B 21 821 197 HOH HOH . 
CA 7 HOH B 22 822 200 HOH HOH . 
CA 7 HOH B 23 823 92 HOH HOH . 
CA 7 HOH B 24 824 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . R 4 -56.708 23.386 -12.788 1 73.72 ? C1 GOL 702 B 1 
HETATM 2 O O1 GOL . . . R 4 -57.429 24.578 -12.845 1 69.8 ? O1 GOL 702 B 1 
HETATM 3 C C2 GOL . . . R 4 -55.459 23.658 -11.925 1 81.04 ? C2 GOL 702 B 1 
HETATM 4 O O2 GOL . . . R 4 -55.792 24.017 -10.622 1 66.32 ? O2 GOL 702 B 1 
HETATM 5 C C3 GOL . . . R 4 -54.666 22.339 -11.978 1 78.21 ? C3 GOL 702 B 1 
HETATM 6 O O3 GOL . . . R 4 -53.389 22.628 -11.506 1 71.76 ? O3 GOL 702 B 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           397 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#