data_6F7V # _model_server_result.job_id MnbUa52Ns7XsFpbqWaGYGA _model_server_result.datetime_utc '2024-11-14 17:29:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6f7v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":502}' # _entry.id 6F7V # _exptl.entry_id 6F7V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 515.68 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{S},5~{R},8~{S},11~{S})-1-[(2~{R},3~{R},5~{R},6~{S})-3,5-dimethyl-6-oxidanyl-4-oxidanylidene-oxan-2-yl]-5,11-dimeth yl-8-oxidanyl-13-[[(2~{S})-2-oxidanylpropanoyl]amino]tridecan-2-yl] ethanoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6F7V _cell.length_a 124.834 _cell.length_b 124.834 _cell.length_c 157.392 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6F7V _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 118 A GLU 114 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.087 ? metalc ? metalc2 A OE2 GLU 118 A GLU 114 1_555 D CA CA . A CA 502 8_775 ? ? ? ? ? ? ? ? ? ? ? ? 3.087 ? # _chem_comp.formula 'C27 H49 N O8' _chem_comp.formula_weight 515.68 _chem_comp.id CWH _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{S},5~{R},8~{S},11~{S})-1-[(2~{R},3~{R},5~{R},6~{S})-3,5-dimethyl-6-oxidanyl-4-oxidanylidene-oxan-2-yl]-5,11-dimeth yl-8-oxidanyl-13-[[(2~{S})-2-oxidanylpropanoyl]amino]tridecan-2-yl] ethanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms LC-KA05 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OBI CAX CWH doub 70 n n CBJ CAX CWH sing 71 n n CAX OAW CWH sing 72 n n OAW CAU CWH sing 73 n n OBH CBC CWH sing 74 n n OBH CAY CWH sing 75 n n OBF CBC CWH sing 76 n n CAV CAU CWH sing 77 n n CAV CAY CWH sing 78 n n CAU CAT CWH sing 79 n n CAR CAQ CWH sing 80 n n CBC CBB CWH sing 81 n n OAN CAM CWH sing 82 n n CAY CAZ CWH sing 83 n n CAZ CBG CWH sing 84 n n CAZ CBA CWH sing 85 n n CAT CAS CWH sing 86 n n CAQ CAS CWH sing 87 n n CAQ CAP CWH sing 88 n n CAM CAL CWH sing 89 n n CAM CAO CWH sing 90 n n CBB CBA CWH sing 91 n n CBB CBE CWH sing 92 n n CBA OBD CWH doub 93 n n CAP CAO CWH sing 94 n n CAL CAK CWH sing 95 n n CAK CAI CWH sing 96 n n CAI CAH CWH sing 97 n n CAI CAJ CWH sing 98 n n CAH CAG CWH sing 99 n n CAG NAF CWH sing 100 n n NAF CAD CWH sing 101 n n CAC CAB CWH sing 102 n n CAD CAB CWH sing 103 n n CAD OAE CWH doub 104 n n OAA CAB CWH sing 105 n n CBG H1 CWH sing 106 n n CBG H2 CWH sing 107 n n CBG H3 CWH sing 108 n n CAZ H4 CWH sing 109 n n CBB H5 CWH sing 110 n n CBE H6 CWH sing 111 n n CBE H7 CWH sing 112 n n CBE H8 CWH sing 113 n n CBC H9 CWH sing 114 n n OBF H10 CWH sing 115 n n CAY H11 CWH sing 116 n n CAV H12 CWH sing 117 n n CAV H13 CWH sing 118 n n CAU H14 CWH sing 119 n n CBJ H15 CWH sing 120 n n CBJ H16 CWH sing 121 n n CBJ H17 CWH sing 122 n n CAT H18 CWH sing 123 n n CAT H19 CWH sing 124 n n CAS H20 CWH sing 125 n n CAS H21 CWH sing 126 n n CAQ H22 CWH sing 127 n n CAR H23 CWH sing 128 n n CAR H24 CWH sing 129 n n CAR H25 CWH sing 130 n n CAP H26 CWH sing 131 n n CAP H27 CWH sing 132 n n CAO H28 CWH sing 133 n n CAO H29 CWH sing 134 n n CAM H30 CWH sing 135 n n OAN H31 CWH sing 136 n n CAL H32 CWH sing 137 n n CAL H33 CWH sing 138 n n CAK H34 CWH sing 139 n n CAK H35 CWH sing 140 n n CAI H36 CWH sing 141 n n CAJ H37 CWH sing 142 n n CAJ H38 CWH sing 143 n n CAJ H39 CWH sing 144 n n CAH H40 CWH sing 145 n n CAH H41 CWH sing 146 n n CAG H42 CWH sing 147 n n CAB H43 CWH sing 148 n n CAC H44 CWH sing 149 n n CAC H45 CWH sing 150 n n CAC H46 CWH sing 151 n n OAA H47 CWH sing 152 n n CAG H48 CWH sing 153 n n NAF H49 CWH sing 154 n n # _atom_sites.entry_id 6F7V _atom_sites.fract_transf_matrix[1][1] 0.008011 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006354 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 501 439 FAD FAD . D 3 CA A 1 502 1 CA CA . E 4 CWH A 1 503 3 CWH DRG . F 2 FAD B 1 501 439 FAD FAD . G 4 CWH B 1 502 3 CWH DRG . H 5 GOL B 1 503 1 GOL GOL . I 6 HOH A 1 601 72 HOH HOH . I 6 HOH A 2 602 51 HOH HOH . I 6 HOH A 3 603 73 HOH HOH . I 6 HOH A 4 604 21 HOH HOH . I 6 HOH A 5 605 83 HOH HOH . I 6 HOH A 6 606 35 HOH HOH . I 6 HOH A 7 607 78 HOH HOH . I 6 HOH A 8 608 20 HOH HOH . I 6 HOH A 9 609 27 HOH HOH . I 6 HOH A 10 610 77 HOH HOH . I 6 HOH A 11 611 117 HOH HOH . I 6 HOH A 12 612 24 HOH HOH . I 6 HOH A 13 613 23 HOH HOH . I 6 HOH A 14 614 55 HOH HOH . I 6 HOH A 15 615 106 HOH HOH . I 6 HOH A 16 616 5 HOH HOH . I 6 HOH A 17 617 2 HOH HOH . I 6 HOH A 18 618 127 HOH HOH . I 6 HOH A 19 619 52 HOH HOH . I 6 HOH A 20 620 85 HOH HOH . I 6 HOH A 21 621 61 HOH HOH . I 6 HOH A 22 622 10 HOH HOH . I 6 HOH A 23 623 58 HOH HOH . I 6 HOH A 24 624 59 HOH HOH . I 6 HOH A 25 625 114 HOH HOH . I 6 HOH A 26 626 1 HOH HOH . I 6 HOH A 27 627 118 HOH HOH . I 6 HOH A 28 628 70 HOH HOH . I 6 HOH A 29 629 3 HOH HOH . I 6 HOH A 30 630 38 HOH HOH . I 6 HOH A 31 631 4 HOH HOH . I 6 HOH A 32 632 116 HOH HOH . I 6 HOH A 33 633 22 HOH HOH . I 6 HOH A 34 634 19 HOH HOH . I 6 HOH A 35 635 113 HOH HOH . I 6 HOH A 36 636 136 HOH HOH . I 6 HOH A 37 637 12 HOH HOH . I 6 HOH A 38 638 26 HOH HOH . I 6 HOH A 39 639 15 HOH HOH . I 6 HOH A 40 640 119 HOH HOH . I 6 HOH A 41 641 62 HOH HOH . I 6 HOH A 42 642 126 HOH HOH . I 6 HOH A 43 643 122 HOH HOH . I 6 HOH A 44 644 120 HOH HOH . I 6 HOH A 45 645 84 HOH HOH . I 6 HOH A 46 646 75 HOH HOH . I 6 HOH A 47 647 93 HOH HOH . I 6 HOH A 48 648 6 HOH HOH . I 6 HOH A 49 649 49 HOH HOH . I 6 HOH A 50 650 125 HOH HOH . I 6 HOH A 51 651 124 HOH HOH . I 6 HOH A 52 652 50 HOH HOH . I 6 HOH A 53 653 112 HOH HOH . I 6 HOH A 54 654 7 HOH HOH . I 6 HOH A 55 655 86 HOH HOH . I 6 HOH A 56 656 34 HOH HOH . I 6 HOH A 57 657 8 HOH HOH . I 6 HOH A 58 658 121 HOH HOH . I 6 HOH A 59 659 115 HOH HOH . I 6 HOH A 60 660 17 HOH HOH . I 6 HOH A 61 661 76 HOH HOH . I 6 HOH A 62 662 60 HOH HOH . I 6 HOH A 63 663 11 HOH HOH . I 6 HOH A 64 664 111 HOH HOH . I 6 HOH A 65 665 57 HOH HOH . I 6 HOH A 66 666 123 HOH HOH . I 6 HOH A 67 667 107 HOH HOH . J 6 HOH B 1 601 134 HOH HOH . J 6 HOH B 2 602 130 HOH HOH . J 6 HOH B 3 603 129 HOH HOH . J 6 HOH B 4 604 65 HOH HOH . J 6 HOH B 5 605 104 HOH HOH . J 6 HOH B 6 606 64 HOH HOH . J 6 HOH B 7 607 47 HOH HOH . J 6 HOH B 8 608 36 HOH HOH . J 6 HOH B 9 609 79 HOH HOH . J 6 HOH B 10 610 45 HOH HOH . J 6 HOH B 11 611 99 HOH HOH . J 6 HOH B 12 612 74 HOH HOH . J 6 HOH B 13 613 97 HOH HOH . J 6 HOH B 14 614 25 HOH HOH . J 6 HOH B 15 615 71 HOH HOH . J 6 HOH B 16 616 90 HOH HOH . J 6 HOH B 17 617 132 HOH HOH . J 6 HOH B 18 618 54 HOH HOH . J 6 HOH B 19 619 29 HOH HOH . J 6 HOH B 20 620 13 HOH HOH . J 6 HOH B 21 621 33 HOH HOH . J 6 HOH B 22 622 42 HOH HOH . J 6 HOH B 23 623 37 HOH HOH . J 6 HOH B 24 624 30 HOH HOH . J 6 HOH B 25 625 102 HOH HOH . J 6 HOH B 26 626 46 HOH HOH . J 6 HOH B 27 627 131 HOH HOH . J 6 HOH B 28 628 9 HOH HOH . J 6 HOH B 29 629 69 HOH HOH . J 6 HOH B 30 630 18 HOH HOH . J 6 HOH B 31 631 133 HOH HOH . J 6 HOH B 32 632 110 HOH HOH . J 6 HOH B 33 633 100 HOH HOH . J 6 HOH B 34 634 44 HOH HOH . J 6 HOH B 35 635 80 HOH HOH . J 6 HOH B 36 636 103 HOH HOH . J 6 HOH B 37 637 39 HOH HOH . J 6 HOH B 38 638 56 HOH HOH . J 6 HOH B 39 639 40 HOH HOH . J 6 HOH B 40 640 53 HOH HOH . J 6 HOH B 41 641 41 HOH HOH . J 6 HOH B 42 642 91 HOH HOH . J 6 HOH B 43 643 108 HOH HOH . J 6 HOH B 44 644 31 HOH HOH . J 6 HOH B 45 645 81 HOH HOH . J 6 HOH B 46 646 28 HOH HOH . J 6 HOH B 47 647 94 HOH HOH . J 6 HOH B 48 648 67 HOH HOH . J 6 HOH B 49 649 87 HOH HOH . J 6 HOH B 50 650 89 HOH HOH . J 6 HOH B 51 651 48 HOH HOH . J 6 HOH B 52 652 98 HOH HOH . J 6 HOH B 53 653 128 HOH HOH . J 6 HOH B 54 654 16 HOH HOH . J 6 HOH B 55 655 135 HOH HOH . J 6 HOH B 56 656 96 HOH HOH . J 6 HOH B 57 657 14 HOH HOH . J 6 HOH B 58 658 32 HOH HOH . J 6 HOH B 59 659 88 HOH HOH . J 6 HOH B 60 660 43 HOH HOH . J 6 HOH B 61 661 105 HOH HOH . J 6 HOH B 62 662 109 HOH HOH . J 6 HOH B 63 663 101 HOH HOH . J 6 HOH B 64 664 82 HOH HOH . J 6 HOH B 65 665 95 HOH HOH . J 6 HOH B 66 666 63 HOH HOH . J 6 HOH B 67 667 92 HOH HOH . J 6 HOH B 68 668 66 HOH HOH . J 6 HOH B 69 669 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBG CWH . . . G 4 164.752 112.53 2.397 1 73.7 ? CBG CWH 502 B 1 HETATM 2 C CAZ CWH . . . G 4 166.02 112.769 3.248 1 76.35 ? CAZ CWH 502 B 1 HETATM 3 C CBA CWH . . . G 4 166.331 114.161 3.356 1 79.03 ? CBA CWH 502 B 1 HETATM 4 O OBD CWH . . . G 4 166.187 114.9 2.382 1 76.49 ? OBD CWH 502 B 1 HETATM 5 C CBB CWH . . . G 4 166.805 114.68 4.614 1 80.56 ? CBB CWH 502 B 1 HETATM 6 C CBE CWH . . . G 4 167.462 116.081 4.596 1 79.8 ? CBE CWH 502 B 1 HETATM 7 C CBC CWH . . . G 4 167.797 113.67 5.137 1 76.2 ? CBC CWH 502 B 1 HETATM 8 O OBF CWH . . . G 4 168.407 114.203 6.289 1 77.03 ? OBF CWH 502 B 1 HETATM 9 O OBH CWH . . . G 4 167.094 112.434 5.407 1 76.85 ? OBH CWH 502 B 1 HETATM 10 C CAY CWH . . . G 4 165.815 112.237 4.66 1 78.62 ? CAY CWH 502 B 1 HETATM 11 C CAV CWH . . . G 4 165.456 110.76 4.768 1 85.13 ? CAV CWH 502 B 1 HETATM 12 C CAU CWH . . . G 4 164.87 110.438 6.2 1 93.56 ? CAU CWH 502 B 1 HETATM 13 O OAW CWH . . . G 4 165.661 109.359 6.801 1 104.41 ? OAW CWH 502 B 1 HETATM 14 C CAX CWH . . . G 4 165.352 108.089 6.408 1 97.27 ? CAX CWH 502 B 1 HETATM 15 O OBI CWH . . . G 4 164.407 107.456 6.876 1 85.08 ? OBI CWH 502 B 1 HETATM 16 C CBJ CWH . . . G 4 166.268 107.488 5.323 1 97.7 ? CBJ CWH 502 B 1 HETATM 17 C CAT CWH . . . G 4 164.901 111.631 7.182 1 96.13 ? CAT CWH 502 B 1 HETATM 18 C CAS CWH . . . G 4 163.882 111.416 8.288 1 89.72 ? CAS CWH 502 B 1 HETATM 19 C CAQ CWH . . . G 4 164.281 112.355 9.486 1 88.07 ? CAQ CWH 502 B 1 HETATM 20 C CAR CWH . . . G 4 165.511 111.773 10.203 1 91.33 ? CAR CWH 502 B 1 HETATM 21 C CAP CWH . . . G 4 163.079 112.466 10.397 1 83.9 ? CAP CWH 502 B 1 HETATM 22 C CAO CWH . . . G 4 163.123 113.439 11.6 1 81.05 ? CAO CWH 502 B 1 HETATM 23 C CAM CWH . . . G 4 164.352 113.429 12.541 1 75.94 ? CAM CWH 502 B 1 HETATM 24 O OAN CWH . . . G 4 164.707 112.091 12.843 1 81.15 ? OAN CWH 502 B 1 HETATM 25 C CAL CWH . . . G 4 163.969 113.945 13.9 1 77.23 ? CAL CWH 502 B 1 HETATM 26 C CAK CWH . . . G 4 164.341 115.418 14.054 1 79.99 ? CAK CWH 502 B 1 HETATM 27 C CAI CWH . . . G 4 164.141 115.77 15.566 1 79.17 ? CAI CWH 502 B 1 HETATM 28 C CAJ CWH . . . G 4 162.71 115.328 16.052 1 76.6 ? CAJ CWH 502 B 1 HETATM 29 C CAH CWH . . . G 4 164.587 117.242 15.868 1 85.98 ? CAH CWH 502 B 1 HETATM 30 C CAG CWH . . . G 4 163.936 117.851 17.174 1 83.88 ? CAG CWH 502 B 1 HETATM 31 N NAF CWH . . . G 4 164.216 119.288 17.421 1 83.97 ? NAF CWH 502 B 1 HETATM 32 C CAD CWH . . . G 4 163.618 119.952 18.456 1 81.62 ? CAD CWH 502 B 1 HETATM 33 O OAE CWH . . . G 4 162.885 119.394 19.28 1 88.46 ? OAE CWH 502 B 1 HETATM 34 C CAB CWH . . . G 4 163.913 121.471 18.633 1 75.86 ? CAB CWH 502 B 1 HETATM 35 C CAC CWH . . . G 4 162.636 122.302 18.456 1 75.58 ? CAC CWH 502 B 1 HETATM 36 O OAA CWH . . . G 4 164.902 121.956 17.726 1 71.08 ? OAA CWH 502 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #