data_6FA2
#
_model_server_result.job_id            rgMnxmeKacFZwB5JPABhoA 
_model_server_result.datetime_utc      '2024-11-24 15:10:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6fa2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":202}' 
#
_entry.id    6FA2 
#
_exptl.entry_id    6FA2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6FA2 
_cell.length_a            63.23 
_cell.length_b            117.215 
_cell.length_c            156.446 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6FA2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,H,I,Y 1 1 
B,J,K,L,Z 2 1 
C,M,N,O,AA 3 1 
D,P,Q,R,BA 4 1 
E,S,T,U,CA 5 1 
F,V,W,X,DA 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 K N N 
? 5 N N N 
? 5 Q N N 
? 5 T N N 
? 5 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 17 A SER 17 1_555 G MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 G MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc3 G MG MG . A MG 201 1_555 H O2B GNP . A GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
metalc ? metalc4 G MG MG . A MG 201 1_555 H O2G GNP . A GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? 
metalc ? metalc5 G MG MG . A MG 201 1_555 Y O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc6 G MG MG . A MG 201 1_555 Y O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc7 B OG SER 20 B SER 17 1_555 J MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc8 B OG1 THR 38 B THR 35 1_555 J MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc9 J MG MG . B MG 201 1_555 K O2G GNP . B GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? 
metalc ? metalc10 J MG MG . B MG 201 1_555 K O2B GNP . B GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc11 J MG MG . B MG 201 1_555 Z O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc12 J MG MG . B MG 201 1_555 Z O HOH . B HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
metalc ? metalc13 C OG SER 21 C SER 17 1_555 M MG MG . C MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc14 C OG1 THR 39 C THR 35 1_555 M MG MG . C MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
metalc ? metalc15 M MG MG . C MG 201 1_555 N O1G GNP . C GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc16 M MG MG . C MG 201 1_555 N O1B GNP . C GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc17 D OG SER 20 D SER 17 1_555 P MG MG . D MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? 
metalc ? metalc18 P MG MG . D MG 201 1_555 Q O2G GNP . D GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? 
metalc ? metalc19 P MG MG . D MG 201 1_555 Q O2B GNP . D GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? 
metalc ? metalc20 E OG SER 20 E SER 17 1_555 S MG MG . E MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? 
metalc ? metalc21 E OG1 THR 38 E THR 35 1_555 S MG MG . E MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc22 S MG MG . E MG 201 1_555 T O1G GNP . E GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc23 S MG MG . E MG 201 1_555 T O1B GNP . E GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc24 F OG SER 20 F SER 17 1_555 V MG MG . F MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
metalc ? metalc25 V MG MG . F MG 201 1_555 W O1B GNP . F GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? 
metalc ? metalc26 V MG MG . F MG 201 1_555 W O1G GNP . F GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 195 n n 
PG O2G GNP sing 196 n n 
PG O3G GNP sing 197 n n 
PG N3B GNP sing 198 n n 
O2G HOG2 GNP sing 199 n n 
O3G HOG3 GNP sing 200 n n 
N3B PB GNP sing 201 n n 
N3B HNB3 GNP sing 202 n n 
PB O1B GNP doub 203 n n 
PB O2B GNP sing 204 n n 
PB O3A GNP sing 205 n n 
O2B HOB2 GNP sing 206 n n 
O3A PA GNP sing 207 n n 
PA O1A GNP doub 208 n n 
PA O2A GNP sing 209 n n 
PA O5' GNP sing 210 n n 
O2A HOA2 GNP sing 211 n n 
O5' C5' GNP sing 212 n n 
C5' C4' GNP sing 213 n n 
C5' "H5'2" GNP sing 214 n n 
C5' "H5'1" GNP sing 215 n n 
C4' O4' GNP sing 216 n n 
C4' C3' GNP sing 217 n n 
C4' H4' GNP sing 218 n n 
O4' C1' GNP sing 219 n n 
C3' O3' GNP sing 220 n n 
C3' C2' GNP sing 221 n n 
C3' H3' GNP sing 222 n n 
O3' HO3' GNP sing 223 n n 
C2' O2' GNP sing 224 n n 
C2' C1' GNP sing 225 n n 
C2' H2' GNP sing 226 n n 
O2' HO2' GNP sing 227 n n 
C1' N9 GNP sing 228 n n 
C1' H1' GNP sing 229 n n 
N9 C8 GNP sing 230 n y 
N9 C4 GNP sing 231 n y 
C8 N7 GNP doub 232 n y 
C8 H8 GNP sing 233 n n 
N7 C5 GNP sing 234 n y 
C5 C6 GNP sing 235 n y 
C5 C4 GNP doub 236 n y 
C6 O6 GNP doub 237 n n 
C6 N1 GNP sing 238 n y 
N1 C2 GNP sing 239 n y 
N1 HN1 GNP sing 240 n n 
C2 N2 GNP sing 241 n n 
C2 N3 GNP doub 242 n y 
N2 HN21 GNP sing 243 n n 
N2 HN22 GNP sing 244 n n 
N3 C4 GNP sing 245 n y 
#
_atom_sites.entry_id                     6FA2 
_atom_sites.fract_transf_matrix[1][1]    0.015815 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008531 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006392 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 MG A 1 201 202 MG MG . 
H 5 GNP A 1 202 201 GNP GNP . 
I 6 D2W A 1 203 205 D2W Ab5 . 
J 4 MG B 1 201 202 MG MG . 
K 5 GNP B 1 202 201 GNP GNP . 
L 6 D2W B 1 203 205 D2W Ab5 . 
M 4 MG C 1 201 202 MG MG . 
N 5 GNP C 1 202 201 GNP GNP . 
O 6 D2W C 1 203 205 D2W Ab5 . 
P 4 MG D 1 201 202 MG MG . 
Q 5 GNP D 1 202 201 GNP GNP . 
R 6 D2W D 1 203 205 D2W Ab5 . 
S 4 MG E 1 201 202 MG MG . 
T 5 GNP E 1 202 201 GNP GNP . 
U 6 D2W E 1 203 1 D2W Ab5 . 
V 4 MG F 1 201 202 MG MG . 
W 5 GNP F 1 202 201 GNP GNP . 
X 6 D2W F 1 203 205 D2W Ab5 . 
Y 7 HOH A 1 301 20 HOH HOH . 
Y 7 HOH A 2 302 4 HOH HOH . 
Y 7 HOH A 3 303 17 HOH HOH . 
Y 7 HOH A 4 304 7 HOH HOH . 
Y 7 HOH A 5 305 24 HOH HOH . 
Y 7 HOH A 6 306 27 HOH HOH . 
Y 7 HOH A 7 307 26 HOH HOH . 
Y 7 HOH A 8 308 25 HOH HOH . 
Y 7 HOH A 9 309 13 HOH HOH . 
Y 7 HOH A 10 310 2 HOH HOH . 
Y 7 HOH A 11 311 8 HOH HOH . 
Z 7 HOH B 1 301 9 HOH HOH . 
Z 7 HOH B 2 302 12 HOH HOH . 
Z 7 HOH B 3 303 19 HOH HOH . 
Z 7 HOH B 4 304 1 HOH HOH . 
AA 7 HOH C 1 301 14 HOH HOH . 
AA 7 HOH C 2 302 23 HOH HOH . 
BA 7 HOH D 1 301 15 HOH HOH . 
BA 7 HOH D 2 302 10 HOH HOH . 
CA 7 HOH E 1 301 22 HOH HOH . 
CA 7 HOH E 2 302 18 HOH HOH . 
CA 7 HOH E 3 303 28 HOH HOH . 
CA 7 HOH E 4 304 6 HOH HOH . 
DA 7 HOH F 1 301 16 HOH HOH . 
DA 7 HOH F 2 302 21 HOH HOH . 
DA 7 HOH F 3 303 11 HOH HOH . 
DA 7 HOH F 4 304 3 HOH HOH . 
DA 7 HOH F 5 305 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . W 5 61.4 130.007 56.059 1 54.07 ? PG GNP 202 F 1 
HETATM 2 O O1G GNP . . . W 5 61.637 130.191 54.465 1 61.53 ? O1G GNP 202 F 1 
HETATM 3 O O2G GNP . . . W 5 59.992 130.279 56.347 1 59.76 ? O2G GNP 202 F 1 
HETATM 4 O O3G GNP . . . W 5 62.285 131.002 56.931 1 61.19 ? O3G GNP 202 F 1 
HETATM 5 N N3B GNP . . . W 5 61.777 128.394 56.536 1 48.62 ? N3B GNP 202 F 1 
HETATM 6 P PB GNP . . . W 5 60.789 127.126 55.907 1 43.14 ? PB GNP 202 F 1 
HETATM 7 O O1B GNP . . . W 5 60.839 127.224 54.433 1 44.44 ? O1B GNP 202 F 1 
HETATM 8 O O2B GNP . . . W 5 59.268 127.145 56.463 1 43.97 ? O2B GNP 202 F 1 
HETATM 9 O O3A GNP . . . W 5 61.481 125.751 56.376 1 49.87 ? O3A GNP 202 F 1 
HETATM 10 P PA GNP . . . W 5 62.665 125.044 55.517 1 51.26 ? PA GNP 202 F 1 
HETATM 11 O O1A GNP . . . W 5 62.038 124.379 54.322 1 55.36 ? O1A GNP 202 F 1 
HETATM 12 O O2A GNP . . . W 5 63.781 126.037 55.299 1 50.1 ? O2A GNP 202 F 1 
HETATM 13 O O5' GNP . . . W 5 63.231 123.955 56.542 1 47.44 ? O5' GNP 202 F 1 
HETATM 14 C C5' GNP . . . W 5 63.84 124.469 57.744 1 46.43 ? C5' GNP 202 F 1 
HETATM 15 C C4' GNP . . . W 5 64.705 123.373 58.323 1 47.27 ? C4' GNP 202 F 1 
HETATM 16 O O4' GNP . . . W 5 63.874 122.273 58.716 1 47.15 ? O4' GNP 202 F 1 
HETATM 17 C C3' GNP . . . W 5 65.695 122.827 57.304 1 49.3 ? C3' GNP 202 F 1 
HETATM 18 O O3' GNP . . . W 5 66.949 122.637 57.959 1 49.59 ? O3' GNP 202 F 1 
HETATM 19 C C2' GNP . . . W 5 65.091 121.511 56.827 1 49.14 ? C2' GNP 202 F 1 
HETATM 20 O O2' GNP . . . W 5 66.063 120.502 56.494 1 48.48 ? O2' GNP 202 F 1 
HETATM 21 C C1' GNP . . . W 5 64.247 121.091 58.027 1 46.12 ? C1' GNP 202 F 1 
HETATM 22 N N9 GNP . . . W 5 63.007 120.381 57.685 1 44.69 ? N9 GNP 202 F 1 
HETATM 23 C C8 GNP . . . W 5 61.951 120.835 56.978 1 46.37 ? C8 GNP 202 F 1 
HETATM 24 N N7 GNP . . . W 5 60.97 119.88 56.909 1 44.62 ? N7 GNP 202 F 1 
HETATM 25 C C5 GNP . . . W 5 61.412 118.803 57.565 1 43.38 ? C5 GNP 202 F 1 
HETATM 26 C C6 GNP . . . W 5 60.887 117.461 57.904 1 47.14 ? C6 GNP 202 F 1 
HETATM 27 O O6 GNP . . . W 5 59.754 117.043 57.525 1 48.63 ? O6 GNP 202 F 1 
HETATM 28 N N1 GNP . . . W 5 61.687 116.696 58.668 1 47.42 ? N1 GNP 202 F 1 
HETATM 29 C C2 GNP . . . W 5 62.922 117.093 59.106 1 47.73 ? C2 GNP 202 F 1 
HETATM 30 N N2 GNP . . . W 5 63.678 116.25 59.87 1 50.29 ? N2 GNP 202 F 1 
HETATM 31 N N3 GNP . . . W 5 63.448 118.307 58.837 1 40.1 ? N3 GNP 202 F 1 
HETATM 32 C C4 GNP . . . W 5 62.749 119.158 58.09 1 42.86 ? C4 GNP 202 F 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#