data_6FAF # _model_server_result.job_id SVOmM5DIggYeJlyRZDRqRg _model_server_result.datetime_utc '2024-11-17 19:37:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6faf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":303}' # _entry.id 6FAF # _exptl.entry_id 6FAF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FAF _cell.length_a 62.803 _cell.length_b 71.086 _cell.length_c 120.554 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FAF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,L 1 1 B,G,H,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 I N N ? 4 J N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 95 A HIS 94 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc2 A NE2 HIS 97 A HIS 96 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc3 A ND1 HIS 120 A HIS 119 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc4 C ZN ZN . A ZN 301 1_555 D S2 D3B . A D3B 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc5 C ZN ZN . A ZN 301 1_555 D N5 D3B . A D3B 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc6 B NE2 HIS 95 B HIS 94 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc7 B NE2 HIS 97 B HIS 96 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc8 B ND1 HIS 120 B HIS 119 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc9 G ZN ZN . B ZN 301 1_555 H S2 D3B . B D3B 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.907 ? metalc ? metalc10 G ZN ZN . B ZN 301 1_555 H N5 D3B . B D3B 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 170 n n C1 C2 GOL sing 171 n n C1 H11 GOL sing 172 n n C1 H12 GOL sing 173 n n O1 HO1 GOL sing 174 n n C2 O2 GOL sing 175 n n C2 C3 GOL sing 176 n n C2 H2 GOL sing 177 n n O2 HO2 GOL sing 178 n n C3 O3 GOL sing 179 n n C3 H31 GOL sing 180 n n C3 H32 GOL sing 181 n n O3 HO3 GOL sing 182 n n # _atom_sites.entry_id 6FAF _atom_sites.fract_transf_matrix[1][1] 0.015923 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014067 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008295 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 301 262 ZN ZN . D 3 D3B A 1 302 1 D3B M30 . E 4 GOL A 1 303 1 GOL GOL . F 4 GOL A 1 304 2 GOL GOL . G 2 ZN B 1 301 262 ZN ZN . H 3 D3B B 1 302 2 D3B M30 . I 4 GOL B 1 303 4 GOL GOL . J 4 GOL B 1 304 5 GOL GOL . K 4 GOL B 1 305 7 GOL GOL . L 5 HOH A 1 401 24 HOH HOH . L 5 HOH A 2 402 82 HOH HOH . L 5 HOH A 3 403 62 HOH HOH . L 5 HOH A 4 404 89 HOH HOH . L 5 HOH A 5 405 170 HOH HOH . L 5 HOH A 6 406 105 HOH HOH . L 5 HOH A 7 407 15 HOH HOH . L 5 HOH A 8 408 146 HOH HOH . L 5 HOH A 9 409 96 HOH HOH . L 5 HOH A 10 410 23 HOH HOH . L 5 HOH A 11 411 74 HOH HOH . L 5 HOH A 12 412 108 HOH HOH . L 5 HOH A 13 413 29 HOH HOH . L 5 HOH A 14 414 2 HOH HOH . L 5 HOH A 15 415 119 HOH HOH . L 5 HOH A 16 416 9 HOH HOH . L 5 HOH A 17 417 149 HOH HOH . L 5 HOH A 18 418 78 HOH HOH . L 5 HOH A 19 419 60 HOH HOH . L 5 HOH A 20 420 112 HOH HOH . L 5 HOH A 21 421 109 HOH HOH . L 5 HOH A 22 422 84 HOH HOH . L 5 HOH A 23 423 21 HOH HOH . L 5 HOH A 24 424 44 HOH HOH . L 5 HOH A 25 425 57 HOH HOH . L 5 HOH A 26 426 106 HOH HOH . L 5 HOH A 27 427 5 HOH HOH . L 5 HOH A 28 428 48 HOH HOH . L 5 HOH A 29 429 95 HOH HOH . L 5 HOH A 30 430 138 HOH HOH . L 5 HOH A 31 431 69 HOH HOH . L 5 HOH A 32 432 92 HOH HOH . L 5 HOH A 33 433 19 HOH HOH . L 5 HOH A 34 434 83 HOH HOH . L 5 HOH A 35 435 28 HOH HOH . L 5 HOH A 36 436 47 HOH HOH . L 5 HOH A 37 437 7 HOH HOH . L 5 HOH A 38 438 49 HOH HOH . L 5 HOH A 39 439 73 HOH HOH . L 5 HOH A 40 440 32 HOH HOH . L 5 HOH A 41 441 140 HOH HOH . L 5 HOH A 42 442 17 HOH HOH . L 5 HOH A 43 443 8 HOH HOH . L 5 HOH A 44 444 59 HOH HOH . L 5 HOH A 45 445 55 HOH HOH . L 5 HOH A 46 446 144 HOH HOH . L 5 HOH A 47 447 35 HOH HOH . L 5 HOH A 48 448 68 HOH HOH . L 5 HOH A 49 449 161 HOH HOH . L 5 HOH A 50 450 86 HOH HOH . L 5 HOH A 51 451 6 HOH HOH . L 5 HOH A 52 452 98 HOH HOH . L 5 HOH A 53 453 41 HOH HOH . L 5 HOH A 54 454 157 HOH HOH . L 5 HOH A 55 455 175 HOH HOH . L 5 HOH A 56 456 111 HOH HOH . L 5 HOH A 57 457 104 HOH HOH . L 5 HOH A 58 458 97 HOH HOH . L 5 HOH A 59 459 118 HOH HOH . L 5 HOH A 60 460 72 HOH HOH . L 5 HOH A 61 461 124 HOH HOH . L 5 HOH A 62 462 31 HOH HOH . L 5 HOH A 63 463 163 HOH HOH . L 5 HOH A 64 464 80 HOH HOH . L 5 HOH A 65 465 58 HOH HOH . L 5 HOH A 66 466 148 HOH HOH . L 5 HOH A 67 467 123 HOH HOH . L 5 HOH A 68 468 114 HOH HOH . L 5 HOH A 69 469 125 HOH HOH . L 5 HOH A 70 470 26 HOH HOH . L 5 HOH A 71 471 154 HOH HOH . L 5 HOH A 72 472 168 HOH HOH . L 5 HOH A 73 473 107 HOH HOH . L 5 HOH A 74 474 174 HOH HOH . L 5 HOH A 75 475 150 HOH HOH . L 5 HOH A 76 476 77 HOH HOH . L 5 HOH A 77 477 56 HOH HOH . L 5 HOH A 78 478 71 HOH HOH . L 5 HOH A 79 479 136 HOH HOH . L 5 HOH A 80 480 133 HOH HOH . L 5 HOH A 81 481 171 HOH HOH . L 5 HOH A 82 482 120 HOH HOH . L 5 HOH A 83 483 81 HOH HOH . L 5 HOH A 84 484 184 HOH HOH . L 5 HOH A 85 485 183 HOH HOH . L 5 HOH A 86 486 130 HOH HOH . L 5 HOH A 87 487 178 HOH HOH . L 5 HOH A 88 488 173 HOH HOH . M 5 HOH B 1 401 39 HOH HOH . M 5 HOH B 2 402 139 HOH HOH . M 5 HOH B 3 403 66 HOH HOH . M 5 HOH B 4 404 167 HOH HOH . M 5 HOH B 5 405 64 HOH HOH . M 5 HOH B 6 406 90 HOH HOH . M 5 HOH B 7 407 79 HOH HOH . M 5 HOH B 8 408 4 HOH HOH . M 5 HOH B 9 409 12 HOH HOH . M 5 HOH B 10 410 30 HOH HOH . M 5 HOH B 11 411 166 HOH HOH . M 5 HOH B 12 412 153 HOH HOH . M 5 HOH B 13 413 63 HOH HOH . M 5 HOH B 14 414 67 HOH HOH . M 5 HOH B 15 415 10 HOH HOH . M 5 HOH B 16 416 51 HOH HOH . M 5 HOH B 17 417 179 HOH HOH . M 5 HOH B 18 418 75 HOH HOH . M 5 HOH B 19 419 159 HOH HOH . M 5 HOH B 20 420 91 HOH HOH . M 5 HOH B 21 421 158 HOH HOH . M 5 HOH B 22 422 52 HOH HOH . M 5 HOH B 23 423 93 HOH HOH . M 5 HOH B 24 424 46 HOH HOH . M 5 HOH B 25 425 43 HOH HOH . M 5 HOH B 26 426 38 HOH HOH . M 5 HOH B 27 427 22 HOH HOH . M 5 HOH B 28 428 176 HOH HOH . M 5 HOH B 29 429 14 HOH HOH . M 5 HOH B 30 430 27 HOH HOH . M 5 HOH B 31 431 25 HOH HOH . M 5 HOH B 32 432 164 HOH HOH . M 5 HOH B 33 433 116 HOH HOH . M 5 HOH B 34 434 11 HOH HOH . M 5 HOH B 35 435 85 HOH HOH . M 5 HOH B 36 436 18 HOH HOH . M 5 HOH B 37 437 42 HOH HOH . M 5 HOH B 38 438 100 HOH HOH . M 5 HOH B 39 439 3 HOH HOH . M 5 HOH B 40 440 117 HOH HOH . M 5 HOH B 41 441 169 HOH HOH . M 5 HOH B 42 442 50 HOH HOH . M 5 HOH B 43 443 129 HOH HOH . M 5 HOH B 44 444 145 HOH HOH . M 5 HOH B 45 445 1 HOH HOH . M 5 HOH B 46 446 177 HOH HOH . M 5 HOH B 47 447 135 HOH HOH . M 5 HOH B 48 448 126 HOH HOH . M 5 HOH B 49 449 37 HOH HOH . M 5 HOH B 50 450 61 HOH HOH . M 5 HOH B 51 451 65 HOH HOH . M 5 HOH B 52 452 121 HOH HOH . M 5 HOH B 53 453 188 HOH HOH . M 5 HOH B 54 454 127 HOH HOH . M 5 HOH B 55 455 185 HOH HOH . M 5 HOH B 56 456 137 HOH HOH . M 5 HOH B 57 457 131 HOH HOH . M 5 HOH B 58 458 101 HOH HOH . M 5 HOH B 59 459 132 HOH HOH . M 5 HOH B 60 460 13 HOH HOH . M 5 HOH B 61 461 36 HOH HOH . M 5 HOH B 62 462 180 HOH HOH . M 5 HOH B 63 463 53 HOH HOH . M 5 HOH B 64 464 182 HOH HOH . M 5 HOH B 65 465 20 HOH HOH . M 5 HOH B 66 466 88 HOH HOH . M 5 HOH B 67 467 102 HOH HOH . M 5 HOH B 68 468 156 HOH HOH . M 5 HOH B 69 469 155 HOH HOH . M 5 HOH B 70 470 16 HOH HOH . M 5 HOH B 71 471 34 HOH HOH . M 5 HOH B 72 472 151 HOH HOH . M 5 HOH B 73 473 181 HOH HOH . M 5 HOH B 74 474 128 HOH HOH . M 5 HOH B 75 475 54 HOH HOH . M 5 HOH B 76 476 99 HOH HOH . M 5 HOH B 77 477 187 HOH HOH . M 5 HOH B 78 478 45 HOH HOH . M 5 HOH B 79 479 113 HOH HOH . M 5 HOH B 80 480 110 HOH HOH . M 5 HOH B 81 481 70 HOH HOH . M 5 HOH B 82 482 40 HOH HOH . M 5 HOH B 83 483 134 HOH HOH . M 5 HOH B 84 484 147 HOH HOH . M 5 HOH B 85 485 33 HOH HOH . M 5 HOH B 86 486 94 HOH HOH . M 5 HOH B 87 487 76 HOH HOH . M 5 HOH B 88 488 141 HOH HOH . M 5 HOH B 89 489 142 HOH HOH . M 5 HOH B 90 490 189 HOH HOH . M 5 HOH B 91 491 186 HOH HOH . M 5 HOH B 92 492 143 HOH HOH . M 5 HOH B 93 493 115 HOH HOH . M 5 HOH B 94 494 152 HOH HOH . M 5 HOH B 95 495 103 HOH HOH . M 5 HOH B 96 496 172 HOH HOH . M 5 HOH B 97 497 87 HOH HOH . M 5 HOH B 98 498 165 HOH HOH . M 5 HOH B 99 499 160 HOH HOH . M 5 HOH B 100 500 162 HOH HOH . M 5 HOH B 101 501 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 4 0.639 65.871 49.514 1 68.12 ? C1 GOL 303 B 1 HETATM 2 O O1 GOL . . . I 4 1.384 64.81 50.121 1 67.3 ? O1 GOL 303 B 1 HETATM 3 C C2 GOL . . . I 4 1.47 67.144 49.575 1 67.2 ? C2 GOL 303 B 1 HETATM 4 O O2 GOL . . . I 4 1.141 68.031 48.502 1 66.87 ? O2 GOL 303 B 1 HETATM 5 C C3 GOL . . . I 4 1.206 67.853 50.89 1 67.85 ? C3 GOL 303 B 1 HETATM 6 O O3 GOL . . . I 4 2.448 68.397 51.346 1 64.64 ? O3 GOL 303 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 491 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #