data_6FAG # _model_server_result.job_id p8m0kcXY4uBFJ_HwW8FKxw _model_server_result.datetime_utc '2024-11-29 13:12:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fag # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 6FAG # _exptl.entry_id 6FAG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FAG _cell.length_a 62.604 _cell.length_b 70.819 _cell.length_c 120.579 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FAG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 95 A HIS 94 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc2 A NE2 HIS 97 A HIS 96 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc3 A ND1 HIS 120 A HIS 119 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc4 C ZN ZN . A ZN 301 1_555 E N22 EON . A EON 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? metalc ? metalc5 B NE2 HIS 95 B HIS 94 1_555 F ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc6 B NE2 HIS 97 B HIS 96 1_555 F ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc7 B ND1 HIS 120 B HIS 119 1_555 F ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc8 F ZN ZN . B ZN 301 1_555 H N22 EON . B EON 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.846 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 168 n n C1 C2 GOL sing 169 n n C1 H11 GOL sing 170 n n C1 H12 GOL sing 171 n n O1 HO1 GOL sing 172 n n C2 O2 GOL sing 173 n n C2 C3 GOL sing 174 n n C2 H2 GOL sing 175 n n O2 HO2 GOL sing 176 n n C3 O3 GOL sing 177 n n C3 H31 GOL sing 178 n n C3 H32 GOL sing 179 n n O3 HO3 GOL sing 180 n n # _atom_sites.entry_id 6FAG _atom_sites.fract_transf_matrix[1][1] 0.015973 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014121 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008293 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 301 261 ZN ZN . D 3 GOL A 1 302 1 GOL GOL . E 4 EON A 1 303 1 EON M20 . F 2 ZN B 1 301 261 ZN ZN . G 3 GOL B 1 302 2 GOL GOL . H 4 EON B 1 303 2 EON M20 . I 5 HOH A 1 401 172 HOH HOH . I 5 HOH A 2 402 2 HOH HOH . I 5 HOH A 3 403 117 HOH HOH . I 5 HOH A 4 404 130 HOH HOH . I 5 HOH A 5 405 8 HOH HOH . I 5 HOH A 6 406 33 HOH HOH . I 5 HOH A 7 407 88 HOH HOH . I 5 HOH A 8 408 34 HOH HOH . I 5 HOH A 9 409 182 HOH HOH . I 5 HOH A 10 410 106 HOH HOH . I 5 HOH A 11 411 169 HOH HOH . I 5 HOH A 12 412 160 HOH HOH . I 5 HOH A 13 413 98 HOH HOH . I 5 HOH A 14 414 29 HOH HOH . I 5 HOH A 15 415 10 HOH HOH . I 5 HOH A 16 416 39 HOH HOH . I 5 HOH A 17 417 48 HOH HOH . I 5 HOH A 18 418 25 HOH HOH . I 5 HOH A 19 419 108 HOH HOH . I 5 HOH A 20 420 32 HOH HOH . I 5 HOH A 21 421 57 HOH HOH . I 5 HOH A 22 422 177 HOH HOH . I 5 HOH A 23 423 190 HOH HOH . I 5 HOH A 24 424 150 HOH HOH . I 5 HOH A 25 425 4 HOH HOH . I 5 HOH A 26 426 175 HOH HOH . I 5 HOH A 27 427 131 HOH HOH . I 5 HOH A 28 428 84 HOH HOH . I 5 HOH A 29 429 69 HOH HOH . I 5 HOH A 30 430 20 HOH HOH . I 5 HOH A 31 431 76 HOH HOH . I 5 HOH A 32 432 207 HOH HOH . I 5 HOH A 33 433 63 HOH HOH . I 5 HOH A 34 434 36 HOH HOH . I 5 HOH A 35 435 126 HOH HOH . I 5 HOH A 36 436 90 HOH HOH . I 5 HOH A 37 437 82 HOH HOH . I 5 HOH A 38 438 58 HOH HOH . I 5 HOH A 39 439 70 HOH HOH . I 5 HOH A 40 440 192 HOH HOH . I 5 HOH A 41 441 132 HOH HOH . I 5 HOH A 42 442 83 HOH HOH . I 5 HOH A 43 443 56 HOH HOH . I 5 HOH A 44 444 173 HOH HOH . I 5 HOH A 45 445 5 HOH HOH . I 5 HOH A 46 446 50 HOH HOH . I 5 HOH A 47 447 197 HOH HOH . I 5 HOH A 48 448 42 HOH HOH . I 5 HOH A 49 449 161 HOH HOH . I 5 HOH A 50 450 7 HOH HOH . I 5 HOH A 51 451 31 HOH HOH . I 5 HOH A 52 452 89 HOH HOH . I 5 HOH A 53 453 96 HOH HOH . I 5 HOH A 54 454 120 HOH HOH . I 5 HOH A 55 455 87 HOH HOH . I 5 HOH A 56 456 166 HOH HOH . I 5 HOH A 57 457 64 HOH HOH . I 5 HOH A 58 458 61 HOH HOH . I 5 HOH A 59 459 193 HOH HOH . I 5 HOH A 60 460 43 HOH HOH . I 5 HOH A 61 461 176 HOH HOH . I 5 HOH A 62 462 91 HOH HOH . I 5 HOH A 63 463 59 HOH HOH . I 5 HOH A 64 464 141 HOH HOH . I 5 HOH A 65 465 37 HOH HOH . I 5 HOH A 66 466 14 HOH HOH . I 5 HOH A 67 467 162 HOH HOH . I 5 HOH A 68 468 148 HOH HOH . I 5 HOH A 69 469 28 HOH HOH . I 5 HOH A 70 470 101 HOH HOH . I 5 HOH A 71 471 205 HOH HOH . I 5 HOH A 72 472 71 HOH HOH . I 5 HOH A 73 473 123 HOH HOH . I 5 HOH A 74 474 68 HOH HOH . I 5 HOH A 75 475 66 HOH HOH . I 5 HOH A 76 476 97 HOH HOH . I 5 HOH A 77 477 156 HOH HOH . I 5 HOH A 78 478 134 HOH HOH . I 5 HOH A 79 479 65 HOH HOH . I 5 HOH A 80 480 203 HOH HOH . I 5 HOH A 81 481 35 HOH HOH . I 5 HOH A 82 482 189 HOH HOH . I 5 HOH A 83 483 73 HOH HOH . I 5 HOH A 84 484 119 HOH HOH . I 5 HOH A 85 485 81 HOH HOH . I 5 HOH A 86 486 99 HOH HOH . I 5 HOH A 87 487 85 HOH HOH . I 5 HOH A 88 488 188 HOH HOH . I 5 HOH A 89 489 122 HOH HOH . I 5 HOH A 90 490 198 HOH HOH . I 5 HOH A 91 491 201 HOH HOH . I 5 HOH A 92 492 206 HOH HOH . I 5 HOH A 93 493 93 HOH HOH . I 5 HOH A 94 494 199 HOH HOH . I 5 HOH A 95 495 200 HOH HOH . I 5 HOH A 96 496 187 HOH HOH . I 5 HOH A 97 497 195 HOH HOH . I 5 HOH A 98 498 136 HOH HOH . I 5 HOH A 99 499 144 HOH HOH . J 5 HOH B 1 401 194 HOH HOH . J 5 HOH B 2 402 44 HOH HOH . J 5 HOH B 3 403 55 HOH HOH . J 5 HOH B 4 404 171 HOH HOH . J 5 HOH B 5 405 110 HOH HOH . J 5 HOH B 6 406 60 HOH HOH . J 5 HOH B 7 407 52 HOH HOH . J 5 HOH B 8 408 196 HOH HOH . J 5 HOH B 9 409 140 HOH HOH . J 5 HOH B 10 410 6 HOH HOH . J 5 HOH B 11 411 1 HOH HOH . J 5 HOH B 12 412 118 HOH HOH . J 5 HOH B 13 413 181 HOH HOH . J 5 HOH B 14 414 107 HOH HOH . J 5 HOH B 15 415 127 HOH HOH . J 5 HOH B 16 416 164 HOH HOH . J 5 HOH B 17 417 158 HOH HOH . J 5 HOH B 18 418 27 HOH HOH . J 5 HOH B 19 419 202 HOH HOH . J 5 HOH B 20 420 155 HOH HOH . J 5 HOH B 21 421 62 HOH HOH . J 5 HOH B 22 422 16 HOH HOH . J 5 HOH B 23 423 210 HOH HOH . J 5 HOH B 24 424 191 HOH HOH . J 5 HOH B 25 425 133 HOH HOH . J 5 HOH B 26 426 19 HOH HOH . J 5 HOH B 27 427 137 HOH HOH . J 5 HOH B 28 428 174 HOH HOH . J 5 HOH B 29 429 114 HOH HOH . J 5 HOH B 30 430 116 HOH HOH . J 5 HOH B 31 431 145 HOH HOH . J 5 HOH B 32 432 11 HOH HOH . J 5 HOH B 33 433 53 HOH HOH . J 5 HOH B 34 434 47 HOH HOH . J 5 HOH B 35 435 168 HOH HOH . J 5 HOH B 36 436 77 HOH HOH . J 5 HOH B 37 437 54 HOH HOH . J 5 HOH B 38 438 46 HOH HOH . J 5 HOH B 39 439 102 HOH HOH . J 5 HOH B 40 440 22 HOH HOH . J 5 HOH B 41 441 26 HOH HOH . J 5 HOH B 42 442 45 HOH HOH . J 5 HOH B 43 443 86 HOH HOH . J 5 HOH B 44 444 167 HOH HOH . J 5 HOH B 45 445 12 HOH HOH . J 5 HOH B 46 446 149 HOH HOH . J 5 HOH B 47 447 15 HOH HOH . J 5 HOH B 48 448 24 HOH HOH . J 5 HOH B 49 449 67 HOH HOH . J 5 HOH B 50 450 51 HOH HOH . J 5 HOH B 51 451 21 HOH HOH . J 5 HOH B 52 452 23 HOH HOH . J 5 HOH B 53 453 128 HOH HOH . J 5 HOH B 54 454 112 HOH HOH . J 5 HOH B 55 455 3 HOH HOH . J 5 HOH B 56 456 78 HOH HOH . J 5 HOH B 57 457 9 HOH HOH . J 5 HOH B 58 458 121 HOH HOH . J 5 HOH B 59 459 146 HOH HOH . J 5 HOH B 60 460 41 HOH HOH . J 5 HOH B 61 461 180 HOH HOH . J 5 HOH B 62 462 185 HOH HOH . J 5 HOH B 63 463 74 HOH HOH . J 5 HOH B 64 464 94 HOH HOH . J 5 HOH B 65 465 95 HOH HOH . J 5 HOH B 66 466 18 HOH HOH . J 5 HOH B 67 467 104 HOH HOH . J 5 HOH B 68 468 92 HOH HOH . J 5 HOH B 69 469 125 HOH HOH . J 5 HOH B 70 470 151 HOH HOH . J 5 HOH B 71 471 179 HOH HOH . J 5 HOH B 72 472 13 HOH HOH . J 5 HOH B 73 473 159 HOH HOH . J 5 HOH B 74 474 109 HOH HOH . J 5 HOH B 75 475 72 HOH HOH . J 5 HOH B 76 476 204 HOH HOH . J 5 HOH B 77 477 163 HOH HOH . J 5 HOH B 78 478 157 HOH HOH . J 5 HOH B 79 479 103 HOH HOH . J 5 HOH B 80 480 40 HOH HOH . J 5 HOH B 81 481 113 HOH HOH . J 5 HOH B 82 482 165 HOH HOH . J 5 HOH B 83 483 17 HOH HOH . J 5 HOH B 84 484 111 HOH HOH . J 5 HOH B 85 485 147 HOH HOH . J 5 HOH B 86 486 138 HOH HOH . J 5 HOH B 87 487 79 HOH HOH . J 5 HOH B 88 488 100 HOH HOH . J 5 HOH B 89 489 38 HOH HOH . J 5 HOH B 90 490 115 HOH HOH . J 5 HOH B 91 491 153 HOH HOH . J 5 HOH B 92 492 75 HOH HOH . J 5 HOH B 93 493 178 HOH HOH . J 5 HOH B 94 494 49 HOH HOH . J 5 HOH B 95 495 152 HOH HOH . J 5 HOH B 96 496 30 HOH HOH . J 5 HOH B 97 497 105 HOH HOH . J 5 HOH B 98 498 183 HOH HOH . J 5 HOH B 99 499 143 HOH HOH . J 5 HOH B 100 500 80 HOH HOH . J 5 HOH B 101 501 186 HOH HOH . J 5 HOH B 102 502 184 HOH HOH . J 5 HOH B 103 503 209 HOH HOH . J 5 HOH B 104 504 135 HOH HOH . J 5 HOH B 105 505 129 HOH HOH . J 5 HOH B 106 506 154 HOH HOH . J 5 HOH B 107 507 124 HOH HOH . J 5 HOH B 108 508 170 HOH HOH . J 5 HOH B 109 509 139 HOH HOH . J 5 HOH B 110 510 208 HOH HOH . J 5 HOH B 111 511 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 12.15 31.406 13.874 1 48.3 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . D 3 13.303 32.211 14.134 1 43.08 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . D 3 12.449 30.652 12.599 1 48.39 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . D 3 11.757 29.396 12.644 1 51.86 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . D 3 11.977 31.528 11.445 1 50.74 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . D 3 12.548 32.852 11.494 1 52.91 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 42 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 1255 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 6 #