data_6FAH # _model_server_result.job_id zin5AcOJjh5jpzOA11Hj_g _model_server_result.datetime_utc '2025-03-13 17:44:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fah # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 6FAH # _exptl.entry_id 6FAH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.93 _cell.angle_gamma 90 _cell.entry_id 6FAH _cell.length_a 213.74 _cell.length_b 144.26 _cell.length_c 102.84 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FAH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N ? 4 K N N ? 4 Q N N ? 4 T N N ? 4 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 330 C CYS 330 1_555 C SG CYS 355 C CYS 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf2 D SG CYS 330 D CYS 330 1_555 D SG CYS 355 D CYS 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? covale ? covale1 A SG CYS 16 A CYS 16 1_555 H S4 SF4 . A SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc1 A SG CYS 10 A CYS 10 1_555 H FE4 SF4 . A SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc2 A SG CYS 13 A CYS 13 1_555 H FE1 SF4 . A SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc3 A SG CYS 16 A CYS 16 1_555 H FE3 SF4 . A SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc4 A SG CYS 20 A CYS 20 1_555 I FE1 SF4 . A SF4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc5 A SG CYS 38 A CYS 38 1_555 I FE2 SF4 . A SF4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc6 A N THR 39 A THR 39 1_555 I FE2 SF4 . A SF4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc7 A SG CYS 41 A CYS 41 1_555 I FE3 SF4 . A SF4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc8 A SG CYS 44 A CYS 44 1_555 I FE4 SF4 . A SF4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc9 A SG CYS 48 A CYS 48 1_555 H FE2 SF4 . A SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc10 E SG CYS 10 E CYS 10 1_555 U FE2 SF4 . E SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc11 E SG CYS 13 E CYS 13 1_555 U FE3 SF4 . E SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc12 E SG CYS 16 E CYS 16 1_555 U FE1 SF4 . E SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc13 E SG CYS 20 E CYS 20 1_555 V FE1 SF4 . E SF4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc14 E SG CYS 38 E CYS 38 1_555 V FE2 SF4 . E SF4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc15 E SG CYS 41 E CYS 41 1_555 V FE3 SF4 . E SF4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc16 E SG CYS 44 E CYS 44 1_555 V FE4 SF4 . E SF4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc17 E SG CYS 48 E CYS 48 1_555 U FE4 SF4 . E SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 6FAH _atom_sites.fract_transf_matrix[1][1] 0.004679 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000735 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006932 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009843 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 FAD A 1 401 411 FAD FAD . H 5 SF4 A 1 402 456 SF4 SF4 . I 5 SF4 A 1 403 457 SF4 SF4 . J 4 FAD B 1 301 301 FAD FAD . K 4 FAD C 1 401 401 FAD FAD . L 6 SO4 C 1 402 1 SO4 SO4 . M 6 SO4 C 1 403 4 SO4 SO4 . N 6 SO4 C 1 404 5 SO4 SO4 . O 6 SO4 C 1 405 6 SO4 SO4 . P 6 SO4 C 1 406 7 SO4 SO4 . Q 4 FAD D 1 401 401 FAD FAD . R 6 SO4 D 1 402 8 SO4 SO4 . S 6 SO4 D 1 403 9 SO4 SO4 . T 4 FAD E 1 401 411 FAD FAD . U 5 SF4 E 1 402 456 SF4 SF4 . V 5 SF4 E 1 403 457 SF4 SF4 . W 4 FAD F 1 301 301 FAD FAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . G 4 -31.177 -51.354 29.245 1 59.33 ? PA FAD 401 A 1 HETATM 2 O O1A FAD . . . G 4 -30.203 -52.436 29.417 1 56.06 ? O1A FAD 401 A 1 HETATM 3 O O2A FAD . . . G 4 -32.065 -51.521 28.045 1 44.18 ? O2A FAD 401 A 1 HETATM 4 O O5B FAD . . . G 4 -31.908 -51.184 30.573 1 79.89 ? O5B FAD 401 A 1 HETATM 5 C C5B FAD . . . G 4 -31.817 -52.18 31.613 1 72.49 ? C5B FAD 401 A 1 HETATM 6 C C4B FAD . . . G 4 -31.286 -51.547 32.874 1 78.73 ? C4B FAD 401 A 1 HETATM 7 O O4B FAD . . . G 4 -32.383 -51.07 33.688 1 76.35 ? O4B FAD 401 A 1 HETATM 8 C C3B FAD . . . G 4 -30.498 -52.482 33.781 1 83.44 ? C3B FAD 401 A 1 HETATM 9 O O3B FAD . . . G 4 -29.572 -51.725 34.548 1 77.32 ? O3B FAD 401 A 1 HETATM 10 C C2B FAD . . . G 4 -31.588 -53.02 34.696 1 88.41 ? C2B FAD 401 A 1 HETATM 11 O O2B FAD . . . G 4 -31.048 -53.506 35.915 1 104.63 ? O2B FAD 401 A 1 HETATM 12 C C1B FAD . . . G 4 -32.366 -51.737 34.935 1 80.54 ? C1B FAD 401 A 1 HETATM 13 N N9A FAD . . . G 4 -33.739 -51.936 35.38 1 75.77 ? N9A FAD 401 A 1 HETATM 14 C C8A FAD . . . G 4 -34.609 -52.898 34.955 1 71.44 ? C8A FAD 401 A 1 HETATM 15 N N7A FAD . . . G 4 -35.789 -52.84 35.522 1 67.27 ? N7A FAD 401 A 1 HETATM 16 C C5A FAD . . . G 4 -35.682 -51.764 36.386 1 58.42 ? C5A FAD 401 A 1 HETATM 17 C C6A FAD . . . G 4 -36.59 -51.178 37.281 1 68.48 ? C6A FAD 401 A 1 HETATM 18 N N6A FAD . . . G 4 -37.838 -51.616 37.462 1 74.98 ? N6A FAD 401 A 1 HETATM 19 N N1A FAD . . . G 4 -36.169 -50.117 37.995 1 63.93 ? N1A FAD 401 A 1 HETATM 20 C C2A FAD . . . G 4 -34.923 -49.678 37.818 1 56.06 ? C2A FAD 401 A 1 HETATM 21 N N3A FAD . . . G 4 -33.98 -50.15 37.006 1 58.31 ? N3A FAD 401 A 1 HETATM 22 C C4A FAD . . . G 4 -34.426 -51.199 36.312 1 66.38 ? C4A FAD 401 A 1 HETATM 23 N N1 FAD . . . G 4 -28.657 -46.223 22.974 1 85.17 ? N1 FAD 401 A 1 HETATM 24 C C2 FAD . . . G 4 -28.839 -44.953 23.429 1 83.22 ? C2 FAD 401 A 1 HETATM 25 O O2 FAD . . . G 4 -29.262 -44.73 24.566 1 85.38 ? O2 FAD 401 A 1 HETATM 26 N N3 FAD . . . G 4 -28.553 -43.888 22.607 1 70.21 ? N3 FAD 401 A 1 HETATM 27 C C4 FAD . . . G 4 -28.081 -43.96 21.336 1 58.39 ? C4 FAD 401 A 1 HETATM 28 O O4 FAD . . . G 4 -27.859 -42.932 20.709 1 58.47 ? O4 FAD 401 A 1 HETATM 29 C C4X FAD . . . G 4 -27.879 -45.307 20.858 1 59.56 ? C4X FAD 401 A 1 HETATM 30 N N5 FAD . . . G 4 -27.438 -45.461 19.663 1 51.2 ? N5 FAD 401 A 1 HETATM 31 C C5X FAD . . . G 4 -27.244 -46.742 19.199 1 54.51 ? C5X FAD 401 A 1 HETATM 32 C C6 FAD . . . G 4 -26.761 -46.919 17.909 1 55.9 ? C6 FAD 401 A 1 HETATM 33 C C7 FAD . . . G 4 -26.552 -48.187 17.389 1 55.51 ? C7 FAD 401 A 1 HETATM 34 C C7M FAD . . . G 4 -26.036 -48.343 15.985 1 47.96 ? C7M FAD 401 A 1 HETATM 35 C C8 FAD . . . G 4 -26.826 -49.308 18.177 1 76.48 ? C8 FAD 401 A 1 HETATM 36 C C8M FAD . . . G 4 -26.61 -50.694 17.642 1 81.65 ? C8M FAD 401 A 1 HETATM 37 C C9 FAD . . . G 4 -27.308 -49.136 19.469 1 81.21 ? C9 FAD 401 A 1 HETATM 38 C C9A FAD . . . G 4 -27.518 -47.865 19.982 1 70.55 ? C9A FAD 401 A 1 HETATM 39 N N10 FAD . . . G 4 -27.987 -47.656 21.29 1 74.8 ? N10 FAD 401 A 1 HETATM 40 C C10 FAD . . . G 4 -28.194 -46.381 21.756 1 79.46 ? C10 FAD 401 A 1 HETATM 41 C C1' FAD . . . G 4 -28.316 -48.798 22.16 1 61.43 ? C1' FAD 401 A 1 HETATM 42 C C2' FAD . . . G 4 -27.445 -48.897 23.404 1 49.45 ? C2' FAD 401 A 1 HETATM 43 O O2' FAD . . . G 4 -26.224 -49.563 23.096 1 48.83 ? O2' FAD 401 A 1 HETATM 44 C C3' FAD . . . G 4 -28.175 -49.728 24.453 1 52.92 ? C3' FAD 401 A 1 HETATM 45 O O3' FAD . . . G 4 -28.74 -50.846 23.783 1 52.8 ? O3' FAD 401 A 1 HETATM 46 C C4' FAD . . . G 4 -29.287 -49.019 25.226 1 51.47 ? C4' FAD 401 A 1 HETATM 47 O O4' FAD . . . G 4 -28.745 -47.942 25.987 1 32.89 ? O4' FAD 401 A 1 HETATM 48 C C5' FAD . . . G 4 -30.004 -49.992 26.138 1 67.63 ? C5' FAD 401 A 1 HETATM 49 O O5' FAD . . . G 4 -31.096 -49.325 26.798 1 69.44 ? O5' FAD 401 A 1 HETATM 50 P P FAD . . . G 4 -30.938 -48.759 28.245 1 74.27 ? P FAD 401 A 1 HETATM 51 O O1P FAD . . . G 4 -29.758 -47.809 28.055 1 79.99 ? O1P FAD 401 A 1 HETATM 52 O O2P FAD . . . G 4 -32.166 -48.251 28.798 1 71.09 ? O2P FAD 401 A 1 HETATM 53 O O3P FAD . . . G 4 -30.431 -49.97 29.085 1 83.33 ? O3P FAD 401 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 410 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 53 #