data_6FAH # _model_server_result.job_id pwPlwcLI1KAGILrlHKiphA _model_server_result.datetime_utc '2025-03-13 17:50:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fah # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 6FAH # _exptl.entry_id 6FAH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.93 _cell.angle_gamma 90 _cell.entry_id 6FAH _cell.length_a 213.74 _cell.length_b 144.26 _cell.length_c 102.84 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FAH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N ? 5 U N N ? 5 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 330 C CYS 330 1_555 C SG CYS 355 C CYS 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf2 D SG CYS 330 D CYS 330 1_555 D SG CYS 355 D CYS 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? covale ? covale1 A SG CYS 16 A CYS 16 1_555 H S4 SF4 . A SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc1 A SG CYS 10 A CYS 10 1_555 H FE4 SF4 . A SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc2 A SG CYS 13 A CYS 13 1_555 H FE1 SF4 . A SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc3 A SG CYS 16 A CYS 16 1_555 H FE3 SF4 . A SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc4 A SG CYS 20 A CYS 20 1_555 I FE1 SF4 . A SF4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc5 A SG CYS 38 A CYS 38 1_555 I FE2 SF4 . A SF4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc6 A N THR 39 A THR 39 1_555 I FE2 SF4 . A SF4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc7 A SG CYS 41 A CYS 41 1_555 I FE3 SF4 . A SF4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc8 A SG CYS 44 A CYS 44 1_555 I FE4 SF4 . A SF4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc9 A SG CYS 48 A CYS 48 1_555 H FE2 SF4 . A SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc10 E SG CYS 10 E CYS 10 1_555 U FE2 SF4 . E SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc11 E SG CYS 13 E CYS 13 1_555 U FE3 SF4 . E SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc12 E SG CYS 16 E CYS 16 1_555 U FE1 SF4 . E SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc13 E SG CYS 20 E CYS 20 1_555 V FE1 SF4 . E SF4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc14 E SG CYS 38 E CYS 38 1_555 V FE2 SF4 . E SF4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc15 E SG CYS 41 E CYS 41 1_555 V FE3 SF4 . E SF4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc16 E SG CYS 44 E CYS 44 1_555 V FE4 SF4 . E SF4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc17 E SG CYS 48 E CYS 48 1_555 U FE4 SF4 . E SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 379 n n FE1 S3 SF4 sing 380 n n FE1 S4 SF4 sing 381 n n FE2 S1 SF4 sing 382 n n FE2 S3 SF4 sing 383 n n FE2 S4 SF4 sing 384 n n FE3 S1 SF4 sing 385 n n FE3 S2 SF4 sing 386 n n FE3 S4 SF4 sing 387 n n FE4 S1 SF4 sing 388 n n FE4 S2 SF4 sing 389 n n FE4 S3 SF4 sing 390 n n # _atom_sites.entry_id 6FAH _atom_sites.fract_transf_matrix[1][1] 0.004679 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000735 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006932 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009843 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 FAD A 1 401 411 FAD FAD . H 5 SF4 A 1 402 456 SF4 SF4 . I 5 SF4 A 1 403 457 SF4 SF4 . J 4 FAD B 1 301 301 FAD FAD . K 4 FAD C 1 401 401 FAD FAD . L 6 SO4 C 1 402 1 SO4 SO4 . M 6 SO4 C 1 403 4 SO4 SO4 . N 6 SO4 C 1 404 5 SO4 SO4 . O 6 SO4 C 1 405 6 SO4 SO4 . P 6 SO4 C 1 406 7 SO4 SO4 . Q 4 FAD D 1 401 401 FAD FAD . R 6 SO4 D 1 402 8 SO4 SO4 . S 6 SO4 D 1 403 9 SO4 SO4 . T 4 FAD E 1 401 411 FAD FAD . U 5 SF4 E 1 402 456 SF4 SF4 . V 5 SF4 E 1 403 457 SF4 SF4 . W 4 FAD F 1 301 301 FAD FAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . H 5 -24.666 27.246 27.538 1 270.27 ? FE1 SF4 402 A 1 HETATM 2 FE FE2 SF4 . . . H 5 -22.056 28.283 28.854 1 267.52 ? FE2 SF4 402 A 1 HETATM 3 FE FE3 SF4 . . . H 5 -23.838 26.191 30.311 1 265.96 ? FE3 SF4 402 A 1 HETATM 4 FE FE4 SF4 . . . H 5 -24.82 29.076 29.992 1 273.75 ? FE4 SF4 402 A 1 HETATM 5 S S1 SF4 . . . H 5 -23.019 28.151 30.814 1 267.87 ? S1 SF4 402 A 1 HETATM 6 S S2 SF4 . . . H 5 -25.636 27.117 29.488 1 268.02 ? S2 SF4 402 A 1 HETATM 7 S S3 SF4 . . . H 5 -23.852 29.214 28.035 1 273.59 ? S3 SF4 402 A 1 HETATM 8 S S4 SF4 . . . H 5 -22.871 26.316 28.354 1 257.08 ? S4 SF4 402 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 73 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 1111 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #