data_6FB4 # _model_server_result.job_id x7VhTfsYy-PoXrW1nEqQUw _model_server_result.datetime_utc '2024-11-29 09:38:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fb4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 6FB4 # _exptl.entry_id 6FB4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6FB4 _cell.length_a 83.88 _cell.length_b 83.88 _cell.length_c 207.77 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FB4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 49 A CYS 705 1_555 A SG CYS 55 A CYS 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 93 A CYS 749 1_555 A SG CYS 103 A CYS 759 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf3 B SG CYS 49 B CYS 705 1_555 B SG CYS 55 B CYS 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 B SG CYS 93 B CYS 749 1_555 B SG CYS 103 B CYS 759 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6FB4 _atom_sites.fract_transf_matrix[1][1] 0.011922 _atom_sites.fract_transf_matrix[1][2] 0.006883 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013766 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004813 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 801 1 GOL GOL . D 2 GOL A 1 802 3 GOL GOL . E 3 PO4 B 1 801 1 PO4 PO4 . F 2 GOL B 1 802 2 GOL GOL . G 2 GOL B 1 803 4 GOL GOL . H 4 HOH A 1 901 59 HOH HOH . H 4 HOH A 2 902 68 HOH HOH . H 4 HOH A 3 903 71 HOH HOH . H 4 HOH A 4 904 97 HOH HOH . H 4 HOH A 5 905 13 HOH HOH . H 4 HOH A 6 906 44 HOH HOH . H 4 HOH A 7 907 2 HOH HOH . H 4 HOH A 8 908 60 HOH HOH . H 4 HOH A 9 909 109 HOH HOH . H 4 HOH A 10 910 3 HOH HOH . H 4 HOH A 11 911 69 HOH HOH . H 4 HOH A 12 912 95 HOH HOH . H 4 HOH A 13 913 39 HOH HOH . H 4 HOH A 14 914 31 HOH HOH . H 4 HOH A 15 915 5 HOH HOH . H 4 HOH A 16 916 81 HOH HOH . H 4 HOH A 17 917 43 HOH HOH . H 4 HOH A 18 918 94 HOH HOH . H 4 HOH A 19 919 48 HOH HOH . H 4 HOH A 20 920 42 HOH HOH . H 4 HOH A 21 921 114 HOH HOH . H 4 HOH A 22 922 17 HOH HOH . H 4 HOH A 23 923 9 HOH HOH . H 4 HOH A 24 924 61 HOH HOH . H 4 HOH A 25 925 4 HOH HOH . H 4 HOH A 26 926 20 HOH HOH . H 4 HOH A 27 927 34 HOH HOH . H 4 HOH A 28 928 82 HOH HOH . H 4 HOH A 29 929 12 HOH HOH . H 4 HOH A 30 930 125 HOH HOH . H 4 HOH A 31 931 33 HOH HOH . H 4 HOH A 32 932 63 HOH HOH . H 4 HOH A 33 933 104 HOH HOH . H 4 HOH A 34 934 119 HOH HOH . H 4 HOH A 35 935 32 HOH HOH . H 4 HOH A 36 936 115 HOH HOH . H 4 HOH A 37 937 56 HOH HOH . H 4 HOH A 38 938 29 HOH HOH . H 4 HOH A 39 939 62 HOH HOH . H 4 HOH A 40 940 67 HOH HOH . H 4 HOH A 41 941 122 HOH HOH . H 4 HOH A 42 942 79 HOH HOH . H 4 HOH A 43 943 55 HOH HOH . H 4 HOH A 44 944 6 HOH HOH . H 4 HOH A 45 945 37 HOH HOH . H 4 HOH A 46 946 112 HOH HOH . H 4 HOH A 47 947 23 HOH HOH . H 4 HOH A 48 948 52 HOH HOH . H 4 HOH A 49 949 83 HOH HOH . H 4 HOH A 50 950 116 HOH HOH . H 4 HOH A 51 951 58 HOH HOH . H 4 HOH A 52 952 107 HOH HOH . H 4 HOH A 53 953 118 HOH HOH . H 4 HOH A 54 954 98 HOH HOH . H 4 HOH A 55 955 89 HOH HOH . H 4 HOH A 56 956 70 HOH HOH . H 4 HOH A 57 957 103 HOH HOH . H 4 HOH A 58 958 99 HOH HOH . H 4 HOH A 59 959 73 HOH HOH . H 4 HOH A 60 960 84 HOH HOH . I 4 HOH B 1 901 7 HOH HOH . I 4 HOH B 2 902 53 HOH HOH . I 4 HOH B 3 903 30 HOH HOH . I 4 HOH B 4 904 15 HOH HOH . I 4 HOH B 5 905 87 HOH HOH . I 4 HOH B 6 906 24 HOH HOH . I 4 HOH B 7 907 40 HOH HOH . I 4 HOH B 8 908 26 HOH HOH . I 4 HOH B 9 909 85 HOH HOH . I 4 HOH B 10 910 47 HOH HOH . I 4 HOH B 11 911 21 HOH HOH . I 4 HOH B 12 912 1 HOH HOH . I 4 HOH B 13 913 18 HOH HOH . I 4 HOH B 14 914 38 HOH HOH . I 4 HOH B 15 915 16 HOH HOH . I 4 HOH B 16 916 91 HOH HOH . I 4 HOH B 17 917 45 HOH HOH . I 4 HOH B 18 918 117 HOH HOH . I 4 HOH B 19 919 41 HOH HOH . I 4 HOH B 20 920 80 HOH HOH . I 4 HOH B 21 921 36 HOH HOH . I 4 HOH B 22 922 11 HOH HOH . I 4 HOH B 23 923 27 HOH HOH . I 4 HOH B 24 924 14 HOH HOH . I 4 HOH B 25 925 19 HOH HOH . I 4 HOH B 26 926 8 HOH HOH . I 4 HOH B 27 927 57 HOH HOH . I 4 HOH B 28 928 75 HOH HOH . I 4 HOH B 29 929 50 HOH HOH . I 4 HOH B 30 930 22 HOH HOH . I 4 HOH B 31 931 64 HOH HOH . I 4 HOH B 32 932 77 HOH HOH . I 4 HOH B 33 933 25 HOH HOH . I 4 HOH B 34 934 78 HOH HOH . I 4 HOH B 35 935 86 HOH HOH . I 4 HOH B 36 936 96 HOH HOH . I 4 HOH B 37 937 54 HOH HOH . I 4 HOH B 38 938 66 HOH HOH . I 4 HOH B 39 939 108 HOH HOH . I 4 HOH B 40 940 106 HOH HOH . I 4 HOH B 41 941 10 HOH HOH . I 4 HOH B 42 942 35 HOH HOH . I 4 HOH B 43 943 120 HOH HOH . I 4 HOH B 44 944 123 HOH HOH . I 4 HOH B 45 945 101 HOH HOH . I 4 HOH B 46 946 46 HOH HOH . I 4 HOH B 47 947 49 HOH HOH . I 4 HOH B 48 948 113 HOH HOH . I 4 HOH B 49 949 76 HOH HOH . I 4 HOH B 50 950 100 HOH HOH . I 4 HOH B 51 951 121 HOH HOH . I 4 HOH B 52 952 74 HOH HOH . I 4 HOH B 53 953 124 HOH HOH . I 4 HOH B 54 954 28 HOH HOH . I 4 HOH B 55 955 102 HOH HOH . I 4 HOH B 56 956 88 HOH HOH . I 4 HOH B 57 957 105 HOH HOH . I 4 HOH B 58 958 111 HOH HOH . I 4 HOH B 59 959 72 HOH HOH . I 4 HOH B 60 960 92 HOH HOH . I 4 HOH B 61 961 110 HOH HOH . I 4 HOH B 62 962 51 HOH HOH . I 4 HOH B 63 963 90 HOH HOH . I 4 HOH B 64 964 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 -20.915 3.434 18.227 1 67.01 ? C1 GOL 802 A 1 HETATM 2 O O1 GOL . . . D 2 -22.236 3.317 17.745 1 68.13 ? O1 GOL 802 A 1 HETATM 3 C C2 GOL . . . D 2 -20.709 4.921 18.6 1 66.28 ? C2 GOL 802 A 1 HETATM 4 O O2 GOL . . . D 2 -21.235 5.778 17.605 1 48.92 ? O2 GOL 802 A 1 HETATM 5 C C3 GOL . . . D 2 -21.396 5.092 20.023 1 63.22 ? C3 GOL 802 A 1 HETATM 6 O O3 GOL . . . D 2 -20.615 4.404 20.979 1 54.05 ? O3 GOL 802 A 1 HETATM 7 H H11 GOL . . . D 2 -20.745 2.877 19.002 1 80.51 ? H11 GOL 802 A 1 HETATM 8 H H12 GOL . . . D 2 -20.265 3.167 17.558 1 80.51 ? H12 GOL 802 A 1 HETATM 9 H HO1 GOL . . . D 2 -22.427 4.06 17.38 1 81.86 ? HO1 GOL 802 A 1 HETATM 10 H H2 GOL . . . D 2 -19.762 5.129 18.651 1 79.64 ? H2 GOL 802 A 1 HETATM 11 H HO2 GOL . . . D 2 -21.083 6.579 17.843 1 58.8 ? HO2 GOL 802 A 1 HETATM 12 H H31 GOL . . . D 2 -21.499 6.038 20.213 1 75.97 ? H31 GOL 802 A 1 HETATM 13 H H32 GOL . . . D 2 -22.301 4.746 19.984 1 75.97 ? H32 GOL 802 A 1 HETATM 14 H HO3 GOL . . . D 2 -21.015 4.486 21.725 1 64.96 ? HO3 GOL 802 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #