data_6FBN
#
_model_server_result.job_id            NE-U8YfJDofVANVfjeoLpA 
_model_server_result.datetime_utc      '2024-11-13 07:22:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6fbn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":407}' 
#
_entry.id    6FBN 
#
_exptl.entry_id    6FBN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6FBN 
_cell.length_a            63.634 
_cell.length_b            103.934 
_cell.length_c            109.787 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6FBN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 57 A GLU 57 1_555 K K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.988 ? 
metalc ? metalc2 O O HOH . A HOH 503 1_555 K K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.078 ? 
metalc ? metalc3 B OD1 ASP 31 B ASP 31 1_555 J MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? 
metalc ? metalc4 B OD2 ASP 31 B ASP 31 1_555 J MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc5 B OD1 ASP 258 B ASP 258 1_555 K K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.891 ? 
metalc ? metalc6 B O ALA 259 B ALA 259 1_555 K K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? 
metalc ? metalc7 H O3G PPK . B PPK 402 1_555 I MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc8 H O4A PPK . B PPK 402 1_555 I MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc9 H O2G PPK . B PPK 402 1_555 J MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? 
metalc ? metalc10 H O1B PPK . B PPK 402 1_555 J MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? 
metalc ? metalc11 H O1A PPK . B PPK 402 1_555 J MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? 
metalc ? metalc12 H O1B PPK . B PPK 402 1_555 K K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? 
metalc ? metalc13 I MG MG . B MG 403 1_555 P O HOH . B HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? 
metalc ? metalc14 J MG MG . B MG 404 1_555 P O HOH . B HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
metalc ? metalc15 K K K . B K 405 1_555 P O HOH . B HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6FBN 
_atom_sites.fract_transf_matrix[1][1]    0.015715 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009621 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009109 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PEG A 1 401 400 PEG PEG . 
D 2 PEG A 1 402 401 PEG PEG . 
E 3 EDO A 1 403 406 EDO EDO . 
F 3 EDO A 1 404 408 EDO EDO . 
G 4 SAM B 1 401 401 SAM SAM . 
H 5 PPK B 1 402 402 PPK PPK . 
I 6 MG B 1 403 403 MG MG . 
J 6 MG B 1 404 404 MG MG . 
K 7 K B 1 405 405 K K . 
L 3 EDO B 1 406 413 EDO EDO . 
M 3 EDO B 1 407 414 EDO EDO . 
N 3 EDO B 1 408 415 EDO EDO . 
O 8 HOH A 1 501 1276 HOH HOH . 
O 8 HOH A 2 502 1278 HOH HOH . 
O 8 HOH A 3 503 1295 HOH HOH . 
O 8 HOH A 4 504 1299 HOH HOH . 
O 8 HOH A 5 505 1195 HOH HOH . 
O 8 HOH A 6 506 1212 HOH HOH . 
O 8 HOH A 7 507 1249 HOH HOH . 
O 8 HOH A 8 508 1190 HOH HOH . 
O 8 HOH A 9 509 1209 HOH HOH . 
O 8 HOH A 10 510 1196 HOH HOH . 
O 8 HOH A 11 511 1218 HOH HOH . 
O 8 HOH A 12 512 1255 HOH HOH . 
O 8 HOH A 13 513 1253 HOH HOH . 
O 8 HOH A 14 514 1256 HOH HOH . 
O 8 HOH A 15 515 1188 HOH HOH . 
O 8 HOH A 16 516 1239 HOH HOH . 
O 8 HOH A 17 517 1264 HOH HOH . 
O 8 HOH A 18 518 1269 HOH HOH . 
O 8 HOH A 19 519 1246 HOH HOH . 
O 8 HOH A 20 520 1281 HOH HOH . 
O 8 HOH A 21 521 1229 HOH HOH . 
O 8 HOH A 22 522 1167 HOH HOH . 
O 8 HOH A 23 523 1317 HOH HOH . 
O 8 HOH A 24 524 1214 HOH HOH . 
O 8 HOH A 25 525 1208 HOH HOH . 
O 8 HOH A 26 526 1217 HOH HOH . 
O 8 HOH A 27 527 1326 HOH HOH . 
O 8 HOH A 28 528 1314 HOH HOH . 
O 8 HOH A 29 529 1261 HOH HOH . 
O 8 HOH A 30 530 1154 HOH HOH . 
O 8 HOH A 31 531 1084 HOH HOH . 
O 8 HOH A 32 532 1241 HOH HOH . 
O 8 HOH A 33 533 1104 HOH HOH . 
O 8 HOH A 34 534 1101 HOH HOH . 
O 8 HOH A 35 535 1244 HOH HOH . 
O 8 HOH A 36 536 1221 HOH HOH . 
O 8 HOH A 37 537 1187 HOH HOH . 
O 8 HOH A 38 538 1311 HOH HOH . 
O 8 HOH A 39 539 1318 HOH HOH . 
O 8 HOH A 40 540 1245 HOH HOH . 
O 8 HOH A 41 541 1263 HOH HOH . 
O 8 HOH A 42 542 1240 HOH HOH . 
O 8 HOH A 43 543 1075 HOH HOH . 
P 8 HOH B 1 501 1206 HOH HOH . 
P 8 HOH B 2 502 1301 HOH HOH . 
P 8 HOH B 3 503 1283 HOH HOH . 
P 8 HOH B 4 504 1284 HOH HOH . 
P 8 HOH B 5 505 1189 HOH HOH . 
P 8 HOH B 6 506 1296 HOH HOH . 
P 8 HOH B 7 507 1202 HOH HOH . 
P 8 HOH B 8 508 1287 HOH HOH . 
P 8 HOH B 9 509 1288 HOH HOH . 
P 8 HOH B 10 510 1285 HOH HOH . 
P 8 HOH B 11 511 1191 HOH HOH . 
P 8 HOH B 12 512 1290 HOH HOH . 
P 8 HOH B 13 513 1320 HOH HOH . 
P 8 HOH B 14 514 1292 HOH HOH . 
P 8 HOH B 15 515 1286 HOH HOH . 
P 8 HOH B 16 516 1300 HOH HOH . 
P 8 HOH B 17 517 1327 HOH HOH . 
P 8 HOH B 18 518 1297 HOH HOH . 
P 8 HOH B 19 519 1203 HOH HOH . 
P 8 HOH B 20 520 1329 HOH HOH . 
P 8 HOH B 21 521 1305 HOH HOH . 
P 8 HOH B 22 522 1313 HOH HOH . 
P 8 HOH B 23 523 1271 HOH HOH . 
P 8 HOH B 24 524 1303 HOH HOH . 
P 8 HOH B 25 525 1315 HOH HOH . 
P 8 HOH B 26 526 1312 HOH HOH . 
P 8 HOH B 27 527 1309 HOH HOH . 
P 8 HOH B 28 528 1308 HOH HOH . 
P 8 HOH B 29 529 1310 HOH HOH . 
P 8 HOH B 30 530 1321 HOH HOH . 
P 8 HOH B 31 531 1325 HOH HOH . 
P 8 HOH B 32 532 1291 HOH HOH . 
P 8 HOH B 33 533 1316 HOH HOH . 
P 8 HOH B 34 534 1302 HOH HOH . 
P 8 HOH B 35 535 1298 HOH HOH . 
P 8 HOH B 36 536 1328 HOH HOH . 
P 8 HOH B 37 537 1250 HOH HOH . 
P 8 HOH B 38 538 1306 HOH HOH . 
P 8 HOH B 39 539 1319 HOH HOH . 
P 8 HOH B 40 540 1100 HOH HOH . 
P 8 HOH B 41 541 1322 HOH HOH . 
P 8 HOH B 42 542 1235 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . M 3 -6.671 12.078 -29.494 1 49.27 ? C1 EDO 407 B 1 
HETATM 2 O O1 EDO . . . M 3 -7.008 13.28 -28.808 1 47.49 ? O1 EDO 407 B 1 
HETATM 3 C C2 EDO . . . M 3 -7.865 11.57 -30.293 1 50.46 ? C2 EDO 407 B 1 
HETATM 4 O O2 EDO . . . M 3 -7.529 10.324 -30.937 1 53.77 ? O2 EDO 407 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           231 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#