data_6FBT # _model_server_result.job_id koo1qyCbrevxoQxeBH-Asg _model_server_result.datetime_utc '2024-11-29 09:46:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fbt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":706}' # _entry.id 6FBT # _exptl.entry_id 6FBT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6FBT _cell.length_a 165.526 _cell.length_b 165.526 _cell.length_c 54.733 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FBT _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 130 1_555 A SG CYS 134 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? covale ? covale1 A CD ARG 398 A ARG 427 1_555 G O2 PO4 . A PO4 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? covale ? covale2 H C1 NAG . A NAG 706 1_555 I O4 AH0 . E AH0 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? covale ? covale3 B C ALA 1 E ALA 3 1_555 B N DGL 2 E DGL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale4 B N ALA 1 E ALA 3 1_555 I C AH0 . E AH0 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale5 B CD DGL 2 E DGL 4 1_555 B N API 3 E API 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale6 B C API 3 E API 5 1_555 B N DAL 4 E DAL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.03 ? covale ? covale7 B N DAL 4 E DAL 6 1_555 B C DAL 5 E DAL 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 330 n n C1 O1 NAG sing 331 n n C1 O5 NAG sing 332 n n C1 H1 NAG sing 333 n n C2 C3 NAG sing 334 n n C2 N2 NAG sing 335 n n C2 H2 NAG sing 336 n n C3 C4 NAG sing 337 n n C3 O3 NAG sing 338 n n C3 H3 NAG sing 339 n n C4 C5 NAG sing 340 n n C4 O4 NAG sing 341 n n C4 H4 NAG sing 342 n n C5 C6 NAG sing 343 n n C5 O5 NAG sing 344 n n C5 H5 NAG sing 345 n n C6 O6 NAG sing 346 n n C6 H61 NAG sing 347 n n C6 H62 NAG sing 348 n n C7 C8 NAG sing 349 n n C7 N2 NAG sing 350 n n C7 O7 NAG doub 351 n n C8 H81 NAG sing 352 n n C8 H82 NAG sing 353 n n C8 H83 NAG sing 354 n n N2 HN2 NAG sing 355 n n O1 HO1 NAG sing 356 n n O3 HO3 NAG sing 357 n n O4 HO4 NAG sing 358 n n O6 HO6 NAG sing 359 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6FBT _atom_sites.fract_transf_matrix[1][1] 0.006041 _atom_sites.fract_transf_matrix[1][2] 0.003488 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006976 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018271 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 701 1 PO4 PO4 . D 3 PO4 A 1 702 5 PO4 PO4 . E 3 PO4 A 1 703 7 PO4 PO4 . F 3 PO4 A 1 704 8 PO4 PO4 . G 3 PO4 A 1 705 9 PO4 PO4 . H 4 NAG A 1 706 1 NAG D89 . I 5 AH0 E 1 101 1 AH0 D89 . J 6 HOH A 1 801 103 HOH HOH . J 6 HOH A 2 802 101 HOH HOH . J 6 HOH A 3 803 70 HOH HOH . J 6 HOH A 4 804 90 HOH HOH . J 6 HOH A 5 805 63 HOH HOH . J 6 HOH A 6 806 89 HOH HOH . J 6 HOH A 7 807 41 HOH HOH . J 6 HOH A 8 808 100 HOH HOH . J 6 HOH A 9 809 34 HOH HOH . J 6 HOH A 10 810 52 HOH HOH . J 6 HOH A 11 811 113 HOH HOH . J 6 HOH A 12 812 4 HOH HOH . J 6 HOH A 13 813 36 HOH HOH . J 6 HOH A 14 814 40 HOH HOH . J 6 HOH A 15 815 49 HOH HOH . J 6 HOH A 16 816 76 HOH HOH . J 6 HOH A 17 817 107 HOH HOH . J 6 HOH A 18 818 74 HOH HOH . J 6 HOH A 19 819 71 HOH HOH . J 6 HOH A 20 820 92 HOH HOH . J 6 HOH A 21 821 98 HOH HOH . J 6 HOH A 22 822 29 HOH HOH . J 6 HOH A 23 823 56 HOH HOH . J 6 HOH A 24 824 97 HOH HOH . J 6 HOH A 25 825 73 HOH HOH . J 6 HOH A 26 826 114 HOH HOH . J 6 HOH A 27 827 112 HOH HOH . J 6 HOH A 28 828 96 HOH HOH . J 6 HOH A 29 829 109 HOH HOH . J 6 HOH A 30 830 61 HOH HOH . J 6 HOH A 31 831 48 HOH HOH . J 6 HOH A 32 832 21 HOH HOH . J 6 HOH A 33 833 81 HOH HOH . J 6 HOH A 34 834 59 HOH HOH . J 6 HOH A 35 835 30 HOH HOH . J 6 HOH A 36 836 33 HOH HOH . J 6 HOH A 37 837 45 HOH HOH . J 6 HOH A 38 838 93 HOH HOH . J 6 HOH A 39 839 94 HOH HOH . J 6 HOH A 40 840 64 HOH HOH . J 6 HOH A 41 841 12 HOH HOH . J 6 HOH A 42 842 23 HOH HOH . J 6 HOH A 43 843 15 HOH HOH . J 6 HOH A 44 844 110 HOH HOH . J 6 HOH A 45 845 11 HOH HOH . J 6 HOH A 46 846 2 HOH HOH . J 6 HOH A 47 847 108 HOH HOH . J 6 HOH A 48 848 57 HOH HOH . J 6 HOH A 49 849 6 HOH HOH . J 6 HOH A 50 850 105 HOH HOH . J 6 HOH A 51 851 32 HOH HOH . J 6 HOH A 52 852 104 HOH HOH . J 6 HOH A 53 853 69 HOH HOH . J 6 HOH A 54 854 85 HOH HOH . J 6 HOH A 55 855 79 HOH HOH . J 6 HOH A 56 856 43 HOH HOH . J 6 HOH A 57 857 106 HOH HOH . J 6 HOH A 58 858 77 HOH HOH . J 6 HOH A 59 859 5 HOH HOH . J 6 HOH A 60 860 75 HOH HOH . J 6 HOH A 61 861 60 HOH HOH . J 6 HOH A 62 862 115 HOH HOH . J 6 HOH A 63 863 9 HOH HOH . J 6 HOH A 64 864 16 HOH HOH . J 6 HOH A 65 865 27 HOH HOH . J 6 HOH A 66 866 8 HOH HOH . J 6 HOH A 67 867 53 HOH HOH . J 6 HOH A 68 868 58 HOH HOH . J 6 HOH A 69 869 84 HOH HOH . J 6 HOH A 70 870 44 HOH HOH . J 6 HOH A 71 871 95 HOH HOH . J 6 HOH A 72 872 111 HOH HOH . J 6 HOH A 73 873 62 HOH HOH . J 6 HOH A 74 874 51 HOH HOH . J 6 HOH A 75 875 47 HOH HOH . J 6 HOH A 76 876 68 HOH HOH . J 6 HOH A 77 877 66 HOH HOH . J 6 HOH A 78 878 99 HOH HOH . J 6 HOH A 79 879 1 HOH HOH . J 6 HOH A 80 880 50 HOH HOH . J 6 HOH A 81 881 26 HOH HOH . J 6 HOH A 82 882 65 HOH HOH . J 6 HOH A 83 883 20 HOH HOH . J 6 HOH A 84 884 67 HOH HOH . J 6 HOH A 85 885 24 HOH HOH . J 6 HOH A 86 886 13 HOH HOH . J 6 HOH A 87 887 17 HOH HOH . J 6 HOH A 88 888 10 HOH HOH . J 6 HOH A 89 889 46 HOH HOH . J 6 HOH A 90 890 87 HOH HOH . J 6 HOH A 91 891 83 HOH HOH . J 6 HOH A 92 892 102 HOH HOH . J 6 HOH A 93 893 19 HOH HOH . J 6 HOH A 94 894 86 HOH HOH . J 6 HOH A 95 895 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . H 4 60.608 -16.584 -13.044 1 57.43 ? C1 NAG 706 A 1 HETATM 2 C C2 NAG . . . H 4 60.737 -15.945 -14.464 1 62.31 ? C2 NAG 706 A 1 HETATM 3 C C3 NAG . . . H 4 60.925 -17.187 -15.353 1 56.27 ? C3 NAG 706 A 1 HETATM 4 C C4 NAG . . . H 4 62.218 -17.906 -15.036 1 57.61 ? C4 NAG 706 A 1 HETATM 5 C C5 NAG . . . H 4 62.215 -18.264 -13.518 1 58.3 ? C5 NAG 706 A 1 HETATM 6 C C6 NAG . . . H 4 63.539 -18.747 -12.974 1 56.74 ? C6 NAG 706 A 1 HETATM 7 C C7 NAG . . . H 4 59.295 -13.964 -14.945 1 63.33 ? C7 NAG 706 A 1 HETATM 8 C C8 NAG . . . H 4 57.953 -13.49 -15.414 1 62.22 ? C8 NAG 706 A 1 HETATM 9 N N2 NAG . . . H 4 59.477 -15.295 -14.882 1 61.52 ? N2 NAG 706 A 1 HETATM 10 O O3 NAG . . . H 4 60.857 -16.741 -16.691 1 58.14 ? O3 NAG 706 A 1 HETATM 11 O O4 NAG . . . H 4 62.322 -19.146 -15.82 1 65.38 ? O4 NAG 706 A 1 HETATM 12 O O5 NAG . . . H 4 61.872 -17.06 -12.73 1 57.19 ? O5 NAG 706 A 1 HETATM 13 O O6 NAG . . . H 4 63.455 -19.067 -11.583 1 59.83 ? O6 NAG 706 A 1 HETATM 14 O O7 NAG . . . H 4 60.154 -13.137 -14.634 1 64.19 ? O7 NAG 706 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #